Wall clock time and date at job start Tue Mar 31 2020 05:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36887 * 126.39665 * 2 1 4 4 C 1.34674 * 106.81226 * 180.02562 * 3 2 1 5 5 N 1.34122 * 108.02224 * 359.78119 * 4 3 2 6 6 C 1.30500 * 109.25822 * 0.36605 * 5 4 3 7 7 C 1.50700 * 125.64921 * 179.88890 * 6 5 4 8 8 H 1.09004 * 110.91549 * 175.79007 * 7 6 5 9 9 C 1.55448 * 111.11612 * 51.80219 * 7 6 5 10 10 C 1.54321 * 102.96961 * 206.45980 * 9 7 6 11 11 N 1.47026 * 107.26791 * 22.19024 * 10 9 7 12 12 S 1.65603 * 125.64288 * 181.07493 * 11 10 9 13 13 O 1.42101 * 104.27765 * 26.05680 * 12 11 10 14 14 O 1.42105 * 104.27117 * 153.90767 * 12 11 10 15 15 C 1.81395 * 104.45353 * 269.97887 * 12 11 10 16 16 C 1.53003 * 109.47131 * 180.02562 * 15 12 11 17 17 C 1.50697 * 109.47014 * 179.97438 * 16 15 12 18 18 H 1.07996 * 120.00157 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99914 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00267 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00017 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46883 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47192 * 120.00154 * 21 19 17 24 24 H 1.48504 * 109.46967 * 240.00120 * 21 19 17 25 25 C 1.47419 * 108.70576 * 1.06162 * 11 10 9 26 26 H 1.08999 * 109.47127 * 269.97927 * 1 2 3 27 27 H 1.09003 * 109.47092 * 29.97613 * 1 2 3 28 28 H 1.09000 * 109.47035 * 149.97331 * 1 2 3 29 29 H 1.07993 * 126.59178 * 0.05359 * 3 2 1 30 30 H 1.08002 * 125.98615 * 180.02562 * 4 3 2 31 31 H 1.08998 * 110.70855 * 88.08784 * 9 7 6 32 32 H 1.08997 * 110.70436 * 324.83532 * 9 7 6 33 33 H 1.08998 * 109.88101 * 262.77542 * 10 9 7 34 34 H 1.08997 * 110.01327 * 141.67909 * 10 9 7 35 35 H 1.09005 * 109.46896 * 300.00268 * 15 12 11 36 36 H 1.08992 * 109.47048 * 60.00245 * 15 12 11 37 37 H 1.09000 * 109.46687 * 299.99895 * 16 15 12 38 38 H 1.09002 * 109.46773 * 60.00106 * 16 15 12 39 39 H 0.96997 * 120.00373 * 179.97438 * 20 19 17 40 40 H 1.09002 * 110.36926 * 94.70918 * 25 11 10 41 41 H 1.08995 * 110.36556 * 216.92202 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0006 5 7 3.5096 -0.6903 0.0040 6 6 2.2663 -1.0870 -0.0006 7 6 1.8018 -2.5206 -0.0001 8 1 0.7156 -2.5777 0.0702 9 6 2.4775 -3.3279 1.1437 10 6 2.4599 -4.7737 0.6044 11 7 2.3455 -4.6922 -0.8592 12 16 2.2617 -5.9825 -1.8939 13 8 1.7144 -7.0297 -1.1046 14 8 1.5665 -5.4788 -3.0263 15 6 3.9899 -6.3386 -2.3144 16 6 4.0461 -7.5260 -3.2777 17 6 5.4819 -7.8214 -3.6275 18 1 6.2749 -7.2220 -3.2054 19 6 5.7830 -8.8570 -4.4865 20 7 4.8174 -9.5866 -5.0010 21 14 7.5628 -9.2237 -4.9196 22 1 8.4513 -8.2648 -4.2150 23 1 7.8985 -10.6087 -4.5025 24 1 7.7533 -9.0884 -6.3862 25 6 2.3174 -3.2718 -1.2529 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5143 29 1 1.9613 2.1345 0.0008 30 1 4.4369 1.2611 -0.0003 31 1 1.8976 -3.2523 2.0635 32 1 3.5008 -2.9880 1.3027 33 1 1.6048 -5.3116 1.0137 34 1 3.3836 -5.2845 0.8761 35 1 4.4358 -5.4645 -2.7891 36 1 4.5423 -6.5804 -1.4065 37 1 3.6001 -8.4001 -2.8033 38 1 3.4938 -7.2836 -4.1856 39 1 5.0293 -10.3149 -5.6056 40 1 3.3191 -2.9307 -1.5143 41 1 1.6364 -3.1239 -2.0909 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332440421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:08 Heat of formation + Delta-G solvation = -10.671875 kcal Electronic energy + Delta-G solvation = -23940.149122 eV Core-core repulsion = 20369.293199 eV Total energy + Delta-G solvation = -3570.855922 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.36435 -38.43539 -36.58919 -35.42437 -34.29823 -33.85494 -32.12094 -31.12037 -29.67569 -28.19952 -27.22565 -25.55970 -23.15831 -22.18988 -21.44961 -21.37847 -19.57168 -18.57933 -17.66556 -17.45649 -16.44415 -16.10592 -15.94331 -15.45577 -15.16603 -14.54745 -14.47696 -14.09731 -13.76252 -13.57313 -13.38458 -13.32522 -13.20858 -13.10585 -12.74649 -12.47439 -11.77118 -11.71920 -11.66362 -11.56180 -11.43344 -11.29082 -11.06542 -10.95254 -10.92722 -10.37111 -10.35239 -10.14155 -9.85804 -9.73030 -9.28009 -8.74032 -8.57343 -8.47881 -6.09750 -4.14936 0.74871 1.75488 2.46638 2.91458 3.05812 3.28003 3.35180 3.39340 4.01499 4.29284 4.32707 4.34911 4.41099 4.46646 4.58227 4.69300 4.77859 4.82301 5.00253 5.18463 5.20678 5.25591 5.27220 5.43037 5.51276 5.64565 5.68214 5.75378 5.78468 5.86742 5.98118 6.08747 6.19141 6.48246 6.53613 6.53907 6.87883 7.33061 7.38964 7.84073 7.89459 8.20888 8.88891 9.49805 11.01382 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.020676 B = 0.003111 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.885032 B = 8998.659661 C = 9673.295119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.459 5.459 3 C -0.061 4.061 4 C -0.026 4.026 5 N -0.481 5.481 6 C 0.219 3.781 7 C -0.017 4.017 8 H 0.096 0.904 9 C -0.112 4.112 10 C 0.121 3.879 11 N -1.019 6.019 12 S 2.606 3.394 13 O -0.961 6.961 14 O -0.963 6.963 15 C -0.588 4.588 16 C 0.027 3.973 17 C -0.518 4.518 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.891 5.891 21 Si 0.900 3.100 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.131 3.869 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.173 0.827 30 H 0.170 0.830 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.079 0.921 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 21.300 13.528 26.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.142 5.142 3 C -0.194 4.194 4 C -0.174 4.174 5 N -0.199 5.199 6 C -0.044 4.044 7 C -0.039 4.039 8 H 0.114 0.886 9 C -0.152 4.152 10 C -0.005 4.005 11 N -0.855 5.855 12 S 2.706 3.294 13 O -0.952 6.952 14 O -0.954 6.954 15 C -0.721 4.721 16 C -0.012 4.012 17 C -0.558 4.558 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C 0.005 3.995 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.191 0.809 30 H 0.187 0.813 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.099 20.174 13.103 25.719 hybrid contribution 0.867 0.677 -0.237 1.125 sum -8.232 20.851 12.866 25.847 Atomic orbital electron populations 1.22094 0.76685 1.04986 1.03704 1.45313 1.07605 1.06648 1.54635 1.22696 0.91422 0.92433 1.12855 1.22329 0.96432 0.91156 1.07493 1.70212 1.18233 1.11935 1.19505 1.22837 0.85853 0.90005 1.05689 1.20737 1.00181 0.85357 0.97622 0.88561 1.22718 1.02577 0.93215 0.96656 1.21674 1.02158 0.97116 0.79515 1.58882 1.90729 1.18815 1.17099 1.05293 0.79095 0.72092 0.72897 1.93533 1.77306 1.55013 1.69327 1.93527 1.71634 1.79080 1.51115 1.30479 1.20465 1.10544 1.10656 1.18978 1.00124 0.89405 0.92658 1.21055 0.91235 1.15530 1.27974 0.91928 1.25070 0.97796 0.95882 0.95779 1.69962 1.31813 1.19815 1.31357 0.86411 0.84361 0.78249 0.78264 1.19589 1.20806 1.20813 1.21920 1.02237 0.79506 0.95872 0.90395 0.89453 0.89172 0.80930 0.81267 0.90192 0.89017 0.90942 0.91118 0.86149 0.86162 0.94838 0.94859 0.92611 0.90253 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 10.83 59.85 0.65 0.96 16 2 N -0.46 -3.91 3.15 -121.27 -0.38 -4.30 16 3 C -0.06 -0.50 11.58 -16.56 -0.19 -0.69 16 4 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 5 N -0.48 -6.06 10.91 -10.82 -0.12 -6.17 16 6 C 0.22 2.37 6.60 -155.42 -1.03 1.34 16 7 C -0.02 -0.17 3.37 -89.47 -0.30 -0.47 16 8 H 0.10 0.78 6.91 -51.93 -0.36 0.42 16 9 C -0.11 -1.07 6.42 -24.74 -0.16 -1.23 16 10 C 0.12 1.40 6.90 -3.06 -0.02 1.38 16 11 N -1.02 -14.51 3.62 -111.43 -0.40 -14.91 16 12 S 2.61 48.42 5.65 -107.50 -0.61 47.81 16 13 O -0.96 -20.20 17.60 -57.54 -1.01 -21.21 16 14 O -0.96 -20.30 17.28 -57.54 -0.99 -21.30 16 15 C -0.59 -11.72 6.12 37.16 0.23 -11.49 16 16 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 17 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 18 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 21 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.13 1.67 6.52 -2.53 -0.02 1.65 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.38 7.15 -51.93 -0.37 0.01 16 29 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 30 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.96 7.81 -51.93 -0.41 0.55 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.12 2.21 8.14 -51.92 -0.42 1.79 16 36 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.08 1.04 7.97 -51.93 -0.41 0.63 16 41 H 0.08 1.07 7.66 -51.93 -0.40 0.67 16 LS Contribution 355.03 15.07 5.35 5.35 Total: -1.00 -37.37 355.03 -10.19 -47.56 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.14 Total: -1.41 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -1.60 Total: -21.85 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.17 Total: -51.46 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -2.01 Total: -42.51 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 48.42 SS G_CDS: -0.61 Total: 47.81 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.37 -10.19 -47.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332440421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.886 kcal (2) G-P(sol) polarization free energy of solvation -37.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds