Wall clock time and date at job start Tue Mar 31 2020 05:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47057 * 2 1 4 4 C 1.46496 * 119.99612 * 274.99588 * 3 2 1 5 5 C 1.50701 * 109.47318 * 280.02938 * 4 3 2 6 6 H 1.07996 * 120.00143 * 4.38584 * 5 4 3 7 7 C 1.37879 * 120.00119 * 184.39304 * 5 4 3 8 8 N 1.31509 * 119.99807 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00101 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47008 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47275 * 119.99595 * 9 7 5 12 12 H 1.48499 * 109.47078 * 239.99396 * 9 7 5 13 13 S 1.65592 * 119.99928 * 94.99964 * 3 2 1 14 14 O 1.42101 * 106.40510 * 330.06742 * 13 3 2 15 15 O 1.42101 * 106.40343 * 197.14910 * 13 3 2 16 16 N 1.65600 * 107.22090 * 83.60658 * 13 3 2 17 17 C 1.46500 * 120.00043 * 64.98758 * 16 13 3 18 18 C 1.50698 * 109.47711 * 165.57723 * 17 16 13 19 19 N 1.31882 * 119.62016 * 89.99430 * 18 17 16 20 20 C 1.31850 * 121.72983 * 180.02562 * 19 18 17 21 21 C 1.38227 * 120.76309 * 0.02562 * 20 19 18 22 22 C 1.38638 * 119.15813 * 359.97438 * 21 20 19 23 23 C 1.38180 * 119.61563 * 270.00333 * 18 17 16 24 24 C 1.50707 * 120.41795 * 0.02562 * 23 18 17 25 25 H 1.08995 * 109.47230 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47531 * 300.00630 * 1 2 3 27 27 H 1.09003 * 109.46853 * 60.00014 * 1 2 3 28 28 H 1.08998 * 109.47032 * 239.99534 * 2 1 3 29 29 H 1.09003 * 109.46853 * 119.99986 * 2 1 3 30 30 H 1.08999 * 109.47289 * 40.03509 * 4 3 2 31 31 H 1.09004 * 109.46745 * 160.03013 * 4 3 2 32 32 H 0.97001 * 120.00552 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00023 * 244.98522 * 16 13 3 34 34 H 1.08998 * 109.47309 * 45.56849 * 17 16 13 35 35 H 1.09006 * 109.46895 * 285.57632 * 17 16 13 36 36 H 1.07998 * 119.62067 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.42255 * 180.02562 * 21 20 19 38 38 H 1.08003 * 120.79018 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.47034 * 269.98249 * 24 23 18 40 40 H 1.08994 * 109.46656 * 29.98037 * 24 23 18 41 41 H 1.08996 * 109.46787 * 149.98342 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4388 1.6950 -1.9424 6 1 4.0484 0.9129 -1.5147 7 6 3.8322 2.3152 -3.1093 8 7 3.0897 3.2674 -3.6305 9 14 5.4190 1.8021 -3.9507 10 1 6.0652 0.7172 -3.1692 11 1 5.1176 1.3140 -5.3205 12 1 6.3359 2.9674 -4.0311 13 16 2.4121 2.1202 1.4286 14 8 1.5762 1.5434 2.4225 15 8 2.4525 3.5152 1.1611 16 7 3.9615 1.6706 1.8023 17 6 5.0720 2.0830 0.9404 18 6 6.3765 1.8644 1.6624 19 7 7.0009 0.7087 1.5447 20 6 8.1438 0.4724 2.1582 21 6 8.7319 1.4376 2.9540 22 6 8.1048 2.6652 3.1017 23 6 6.9046 2.8770 2.4403 24 6 6.1840 4.1943 2.5700 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.3127 1.8775 -1.9117 31 1 2.1818 3.1802 -1.0657 32 1 3.3662 3.7035 -4.4516 33 1 4.1338 1.1343 2.5920 34 1 4.9666 3.1392 0.6923 35 1 5.0601 1.4918 0.0246 36 1 8.6257 -0.4866 2.0383 37 1 9.6683 1.2383 3.4536 38 1 8.5410 3.4384 3.7168 39 1 6.5219 4.8719 1.7858 40 1 5.1106 4.0323 2.4726 41 1 6.3987 4.6313 3.5451 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337056621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:08 Heat of formation + Delta-G solvation = -48.537885 kcal Electronic energy + Delta-G solvation = -25088.671018 eV Core-core repulsion = 21516.173103 eV Total energy + Delta-G solvation = -3572.497916 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.35163 -36.65740 -36.02038 -35.25002 -35.17237 -33.51639 -32.69275 -31.57119 -29.89631 -27.50440 -26.63309 -25.88517 -23.13196 -22.53193 -21.71074 -21.53837 -18.86162 -17.38723 -16.94561 -16.74480 -16.41368 -16.21443 -15.65542 -15.13165 -14.77820 -14.37670 -14.06692 -13.72453 -13.30739 -13.21743 -13.04556 -12.81494 -12.76937 -12.63384 -12.36141 -12.03439 -11.97497 -11.72573 -11.65871 -11.42137 -11.28181 -11.10848 -11.04052 -10.89762 -10.51178 -10.33998 -10.00026 -9.77452 -9.75301 -9.42735 -8.98243 -8.83956 -8.49017 -8.02965 -6.10293 -4.16559 0.96119 1.23818 1.41409 3.25428 3.34534 3.38351 3.49001 3.85098 4.20447 4.31507 4.37957 4.68513 4.76825 4.92826 4.99037 5.12189 5.23736 5.36596 5.44789 5.54214 5.59268 5.69148 5.78949 5.83852 5.86833 6.00249 6.09091 6.13847 6.22377 6.27674 6.38009 6.41308 6.70501 6.71741 6.75078 7.27360 7.39931 7.47176 7.70328 7.87689 8.04324 8.17442 8.89187 9.49637 10.97511 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.006535 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.027058 B = 4283.707316 C = 5813.860239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.990 5.990 4 C 0.242 3.758 5 C -0.539 4.539 6 H 0.066 0.934 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.785 3.215 14 O -0.999 6.999 15 O -0.977 6.977 16 N -1.124 6.124 17 C 0.167 3.833 18 C 0.124 3.876 19 N -0.464 5.464 20 C 0.089 3.911 21 C -0.172 4.172 22 C -0.082 4.082 23 C -0.118 4.118 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.264 0.736 33 H 0.407 0.593 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.525 -3.336 12.009 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.832 5.832 4 C 0.120 3.880 5 C -0.578 4.578 6 H 0.084 0.916 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.793 3.207 14 O -0.983 6.983 15 O -0.961 6.961 16 N -0.882 5.882 17 C 0.040 3.960 18 C -0.015 4.015 19 N -0.173 5.173 20 C -0.069 4.069 21 C -0.192 4.192 22 C -0.108 4.108 23 C -0.120 4.120 24 C -0.179 4.179 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.171 0.829 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.530 -3.146 11.643 13.715 hybrid contribution 1.841 -0.175 0.002 1.849 sum 8.371 -3.322 11.645 14.721 Atomic orbital electron populations 1.22212 0.96964 1.01320 1.02455 1.20955 0.93584 0.82823 1.02114 1.57701 1.78454 1.23012 1.24029 1.19239 0.97273 0.92575 0.78919 1.21602 1.07188 1.20503 1.08529 0.91559 1.24930 0.96997 0.94734 0.97031 1.69941 1.37882 1.24158 1.20583 0.86613 0.83597 0.78731 0.79628 1.19354 1.20962 1.20930 1.01764 0.72473 0.73769 0.72684 1.93554 1.65215 1.79810 1.59704 1.93575 1.86477 1.30822 1.85205 1.55994 1.24566 1.70430 1.37252 1.20266 0.80309 1.02441 0.92934 1.21260 0.96380 0.88955 0.94890 1.67538 1.08452 1.21551 1.19748 1.22744 0.91690 0.99257 0.93199 1.22123 1.01395 0.94748 1.00907 1.21476 0.94176 0.97163 0.98026 1.20868 0.95973 0.97821 0.97386 1.20902 1.01476 0.93003 1.02499 0.92458 0.92518 0.92091 0.90074 0.92177 0.94720 0.92547 0.92666 0.76112 0.88597 0.87714 0.82881 0.85013 0.84937 0.90241 0.89951 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.13 2.30 6.02 -4.04 -0.02 2.28 16 3 N -0.99 -20.12 2.84 -115.66 -0.33 -20.45 16 4 C 0.24 5.86 5.46 -5.20 -0.03 5.83 16 5 C -0.54 -13.67 8.50 -34.44 -0.29 -13.96 16 6 H 0.07 1.64 6.45 -52.49 -0.34 1.30 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -24.95 13.29 55.43 0.74 -24.22 16 9 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 S 2.79 54.45 6.07 -107.50 -0.65 53.80 16 14 O -1.00 -20.27 17.17 -57.17 -0.98 -21.25 16 15 O -0.98 -21.94 16.02 -57.17 -0.92 -22.86 16 16 N -1.12 -18.71 6.01 -11.66 -0.07 -18.78 16 17 C 0.17 2.93 5.68 -5.19 -0.03 2.90 16 18 C 0.12 1.95 6.17 -82.59 -0.51 1.44 16 19 N -0.46 -7.26 10.27 -9.48 -0.10 -7.36 16 20 C 0.09 1.08 11.18 -17.55 -0.20 0.88 16 21 C -0.17 -1.76 10.11 -39.44 -0.40 -2.16 16 22 C -0.08 -0.90 9.86 -39.28 -0.39 -1.29 16 23 C -0.12 -1.57 5.90 -104.48 -0.62 -2.19 16 24 C -0.12 -1.49 9.21 36.01 0.33 -1.15 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 27 H 0.06 1.01 8.10 -51.93 -0.42 0.58 16 28 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 29 H 0.06 0.94 7.79 -51.93 -0.40 0.54 16 30 H 0.03 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.06 1.50 6.77 -51.93 -0.35 1.15 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.41 5.92 8.64 -34.47 -0.30 5.62 16 34 H 0.10 1.74 6.31 -51.93 -0.33 1.41 16 35 H 0.10 2.07 5.85 -51.93 -0.30 1.76 16 36 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.15 6.68 -51.93 -0.35 0.80 16 41 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 LS Contribution 353.93 15.07 5.33 5.33 Total: -1.00 -31.76 353.93 -9.58 -41.34 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.71 Total: 6.99 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.87 Total: -8.09 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: 0.24 Total: -70.81 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -1.90 Total: -44.11 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 54.45 SS G_CDS: -0.65 Total: 53.80 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.76 -9.58 -41.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337056621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.200 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds