Wall clock time and date at job start Tue Mar 31 2020 04:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99962 * 2 1 4 4 O 1.20823 * 119.99651 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99801 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46673 * 179.97438 * 5 3 2 7 7 N 1.46904 * 109.46814 * 179.97438 * 6 5 3 8 8 C 1.46959 * 110.99800 * 66.04787 * 7 6 5 9 9 C 1.53058 * 109.36035 * 183.18948 * 8 7 6 10 10 N 1.46949 * 109.36377 * 301.59375 * 9 8 7 11 11 C 1.46895 * 111.00314 * 183.19173 * 10 9 8 12 12 C 1.50700 * 109.47051 * 66.04690 * 11 10 9 13 13 O 1.21292 * 119.99931 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99961 * 180.02562 * 12 11 10 15 15 C 1.37090 * 119.99722 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00228 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99996 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99860 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00198 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47163 * 60.00180 * 19 17 15 21 21 H 1.48505 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47290 * 300.00176 * 19 17 15 23 23 C 1.46960 * 110.88209 * 59.32508 * 10 9 8 24 24 H 1.09005 * 109.48805 * 60.64224 * 23 10 9 25 25 C 1.52999 * 109.49526 * 180.71012 * 23 10 9 26 26 C 1.46954 * 110.99944 * 189.84710 * 7 6 5 27 27 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46936 * 300.00051 * 1 2 3 29 29 H 1.09001 * 109.47347 * 59.99883 * 1 2 3 30 30 H 1.08998 * 109.47429 * 60.00232 * 5 3 2 31 31 H 1.08993 * 109.47050 * 299.99726 * 5 3 2 32 32 H 1.08993 * 109.47129 * 60.00450 * 6 5 3 33 33 H 1.08993 * 109.47287 * 299.99738 * 6 5 3 34 34 H 1.08991 * 109.49020 * 63.22165 * 8 7 6 35 35 H 1.09000 * 109.50707 * 303.15926 * 8 7 6 36 36 H 1.09000 * 109.48515 * 181.63062 * 9 8 7 37 37 H 1.08997 * 109.50728 * 61.57468 * 9 8 7 38 38 H 1.09004 * 109.47210 * 306.04912 * 11 10 9 39 39 H 1.08997 * 109.47605 * 186.05272 * 11 10 9 40 40 H 0.96995 * 120.00015 * 359.72695 * 14 12 11 41 41 H 0.97000 * 120.00310 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.46637 * 59.99989 * 25 23 10 43 43 H 1.08997 * 109.46986 * 179.97438 * 25 23 10 44 44 H 1.08999 * 109.47044 * 300.00265 * 25 23 10 45 45 H 1.08998 * 109.49011 * 296.78060 * 26 7 6 46 46 H 1.09003 * 109.49004 * 56.82276 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4671 2.8190 -0.0011 8 6 6.0222 2.2899 -1.2547 9 6 7.5509 2.3139 -1.1827 10 7 8.0060 3.6914 -0.9487 11 6 9.4730 3.7684 -0.9486 12 6 9.9928 3.4483 -2.3265 13 8 9.2175 3.1827 -3.2206 14 7 11.3193 3.4572 -2.5651 15 6 11.7922 3.1655 -3.8184 16 1 11.1018 2.9290 -4.6146 17 6 13.1597 3.1752 -4.0647 18 7 13.9997 3.4634 -3.0961 19 14 13.8041 2.7784 -5.7725 20 1 13.2571 3.7561 -6.7474 21 1 15.2871 2.8556 -5.7724 22 1 13.3803 1.4076 -6.1554 23 6 7.4509 4.2206 0.3049 24 1 7.7855 3.6044 1.1395 25 6 7.9297 5.6595 0.5081 26 6 5.9223 4.1965 0.2331 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7806 0.8891 32 1 3.6107 3.2364 0.8889 33 1 3.6101 3.2360 -0.8910 34 1 5.6877 2.9060 -2.0892 35 1 5.6812 1.2648 -1.3997 36 1 7.9649 1.9489 -2.1227 37 1 7.8869 1.6760 -0.3653 38 1 9.8745 3.0508 -0.2331 39 1 9.7841 4.7745 -0.6675 40 1 11.9391 3.6735 -1.8511 41 1 14.9543 3.4706 -3.2680 42 1 7.5940 6.2753 -0.3263 43 1 7.5174 6.0518 1.4377 44 1 9.0185 5.6766 0.5572 45 1 5.5865 4.8344 -0.5845 46 1 5.5079 4.5617 1.1728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182113675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:24 Heat of formation + Delta-G solvation = -128.557980 kcal Electronic energy + Delta-G solvation = -26375.074179 eV Core-core repulsion = 22492.186555 eV Total energy + Delta-G solvation = -3882.887624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57659 -40.88664 -39.60308 -37.74095 -36.83506 -35.86344 -33.32309 -33.29105 -32.70287 -30.03335 -28.54969 -28.00507 -26.77590 -25.31613 -24.21495 -22.75355 -21.31312 -21.07735 -20.59622 -19.83681 -18.79544 -17.90824 -17.70105 -17.59421 -16.85915 -16.67959 -16.44091 -16.08428 -15.81655 -15.60956 -15.49854 -15.22355 -14.85247 -14.67691 -14.18038 -13.93896 -13.80011 -13.69224 -13.43574 -13.25281 -12.96530 -12.92329 -12.72607 -12.69534 -12.55049 -12.41750 -12.16770 -12.12353 -11.99212 -11.83446 -11.74677 -11.59401 -11.40978 -11.38227 -10.23408 -9.97818 -9.45100 -9.14515 -8.44233 -5.92568 1.12941 1.40591 1.42203 1.53030 1.68101 2.07922 2.29576 2.75571 2.90479 3.22460 3.40939 3.68149 3.80818 3.91690 4.03773 4.07749 4.21848 4.29581 4.31767 4.34580 4.35033 4.41119 4.46858 4.49654 4.55775 4.60936 4.70767 4.76698 4.79262 4.81609 4.89376 4.98881 5.01111 5.07706 5.17049 5.36162 5.38686 5.42783 5.84975 5.92316 6.00328 6.15914 6.30293 6.63423 6.67885 7.15381 7.59305 8.15288 8.72924 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.022170 B = 0.002421 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.681157 B =11564.098471 C =12538.467075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.467 3.533 4 O -0.541 6.541 5 C -0.106 4.106 6 C 0.072 3.928 7 N -0.536 5.536 8 C 0.064 3.936 9 C 0.059 3.941 10 N -0.532 5.532 11 C 0.055 3.945 12 C 0.443 3.557 13 O -0.613 6.613 14 N -0.575 5.575 15 C -0.330 4.330 16 H 0.079 0.921 17 C -0.014 4.014 18 N -0.921 5.921 19 Si 0.992 3.008 20 H -0.273 1.273 21 H -0.271 1.271 22 H -0.272 1.272 23 C 0.083 3.917 24 H 0.054 0.946 25 C -0.146 4.146 26 C 0.068 3.932 27 H 0.130 0.870 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.030 0.970 34 H 0.025 0.975 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.395 0.605 41 H 0.277 0.723 42 H 0.052 0.948 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.031 0.969 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.880 -3.801 12.456 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.312 3.688 4 O -0.432 6.432 5 C -0.144 4.144 6 C -0.056 4.056 7 N -0.260 5.260 8 C -0.064 4.064 9 C -0.070 4.070 10 N -0.258 5.258 11 C -0.075 4.075 12 C 0.230 3.770 13 O -0.500 6.500 14 N -0.212 5.212 15 C -0.460 4.460 16 H 0.097 0.903 17 C -0.214 4.214 18 N -0.562 5.562 19 Si 0.816 3.184 20 H -0.198 1.198 21 H -0.196 1.196 22 H -0.197 1.197 23 C -0.025 4.025 24 H 0.072 0.928 25 C -0.203 4.203 26 C -0.060 4.060 27 H 0.149 0.851 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.135 0.865 31 H 0.152 0.848 32 H 0.107 0.893 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.049 0.951 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.425 -3.684 11.874 23.911 hybrid contribution 0.660 0.094 -0.762 1.012 sum -19.766 -3.591 11.112 22.958 Atomic orbital electron populations 1.23539 0.74856 1.05668 1.02476 1.86512 1.24986 1.32933 1.83683 1.24051 0.92689 0.81058 0.71034 1.90667 1.68163 1.37344 1.46979 1.21366 0.85804 0.99202 1.08008 1.21773 0.86769 0.94947 1.02086 1.62181 1.08106 1.21454 1.34303 1.22143 0.93503 1.00763 0.90010 1.22170 0.95315 0.88520 1.00949 1.61756 1.06758 1.21976 1.35313 1.21781 0.89104 1.03509 0.93150 1.20765 0.82233 0.82620 0.91387 1.90453 1.56654 1.54705 1.48141 1.41931 1.05862 1.61787 1.11664 1.19598 0.91645 1.45893 0.88870 0.90346 1.26027 0.95497 0.96784 1.03093 1.69667 1.03711 1.48929 1.33860 0.85003 0.77229 0.78824 0.77358 1.19839 1.19552 1.19689 1.21783 0.94292 0.96902 0.89572 0.92843 1.21897 1.01606 0.94174 1.02665 1.22205 0.93911 0.88195 1.01708 0.85149 0.91806 0.92208 0.86494 0.84831 0.89314 0.95161 0.95672 0.88328 0.91340 0.94335 0.91890 0.86986 0.77097 0.91365 0.92876 0.89423 0.92050 0.95110 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -6.15 10.57 -51.43 -0.54 -6.69 16 3 C 0.47 8.92 7.96 71.24 0.57 9.49 16 4 O -0.54 -13.51 15.73 21.97 0.35 -13.17 16 5 C -0.11 -1.64 5.74 29.85 0.17 -1.47 16 6 C 0.07 1.38 4.25 86.30 0.37 1.75 16 7 N -0.54 -11.81 4.71 -895.71 -4.22 -16.03 16 8 C 0.06 1.68 5.41 86.31 0.47 2.15 16 9 C 0.06 1.91 5.26 86.31 0.45 2.36 16 10 N -0.53 -17.55 4.26 -875.02 -3.73 -21.28 16 11 C 0.06 1.96 5.21 85.56 0.45 2.41 16 12 C 0.44 21.21 7.48 87.66 0.66 21.86 16 13 O -0.61 -33.81 13.90 -3.07 -0.04 -33.86 16 14 N -0.57 -29.68 5.29 -306.98 -1.62 -31.31 16 15 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 16 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 17 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 18 N -0.92 -49.85 13.05 21.66 0.28 -49.57 16 19 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 C 0.08 2.03 2.56 44.92 0.12 2.15 16 24 H 0.05 1.27 8.14 -2.38 -0.02 1.26 16 25 C -0.15 -3.08 8.89 71.98 0.64 -2.44 16 26 C 0.07 1.51 4.89 86.31 0.42 1.93 16 27 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.73 8.13 -2.38 -0.02 0.71 16 29 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 30 H 0.12 1.64 6.49 -2.39 -0.02 1.62 16 31 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.62 7.99 -2.39 -0.02 1.60 16 33 H 0.03 0.68 8.08 -2.39 -0.02 0.66 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 2.13 6.34 -2.39 -0.02 2.11 16 36 H 0.07 2.79 5.84 -2.39 -0.01 2.78 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 2.04 8.12 -2.38 -0.02 2.02 16 39 H 0.11 3.54 5.74 -2.39 -0.01 3.53 16 40 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 41 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.06 1.32 6.15 -2.39 -0.01 1.30 16 45 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.10 1.78 8.07 -2.39 -0.02 1.76 16 Total: -1.00 -70.94 369.35 -0.47 -71.41 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.25 Total: 31.92 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 6.78 Total: 23.39 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -9.29 Total: -118.18 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -0.24 Total: -53.72 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -70.94 -0.47 -71.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182113675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.146 kcal (2) G-P(sol) polarization free energy of solvation -70.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds