Wall clock time and date at job start Tue Mar 31 2020 04:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00124 * 2 1 4 4 O 1.21282 * 119.99916 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00085 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.51086 * 304.91186 * 5 3 2 7 7 C 1.53101 * 109.50687 * 65.00371 * 5 3 2 8 8 N 1.47006 * 109.26099 * 176.78302 * 7 5 3 9 9 C 1.46900 * 111.00290 * 177.60209 * 8 7 5 10 10 H 1.08999 * 109.46868 * 59.04043 * 9 8 7 11 11 C 1.52998 * 109.47237 * 299.03880 * 9 8 7 12 12 C 1.50703 * 109.47207 * 179.03640 * 9 8 7 13 13 O 1.21282 * 119.99957 * 30.70706 * 12 9 8 14 14 N 1.34773 * 119.99822 * 210.70886 * 12 9 8 15 15 C 1.46497 * 120.00195 * 354.79541 * 14 12 9 16 16 C 1.46498 * 119.99691 * 174.79895 * 14 12 9 17 17 C 1.50700 * 109.47583 * 90.00018 * 16 14 12 18 18 H 1.07997 * 119.99647 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00055 * 179.97438 * 17 16 14 20 20 N 1.31508 * 120.00380 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99705 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47056 * 59.99924 * 21 19 17 23 23 H 1.48502 * 109.46791 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46976 * 299.99646 * 21 19 17 25 25 C 1.47012 * 110.75039 * 301.38368 * 8 7 5 26 26 C 1.53094 * 109.26153 * 58.61578 * 25 8 7 27 27 O 1.43016 * 109.50518 * 184.78010 * 5 3 2 28 28 H 1.09001 * 109.47027 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46549 * 60.00446 * 1 2 3 30 30 H 1.08995 * 109.47630 * 300.00236 * 1 2 3 31 31 H 0.97004 * 120.00130 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.50311 * 296.71431 * 7 5 3 33 33 H 1.08999 * 109.50977 * 56.84208 * 7 5 3 34 34 H 1.08999 * 109.47104 * 305.40811 * 11 9 8 35 35 H 1.09006 * 109.47022 * 65.41110 * 11 9 8 36 36 H 1.08994 * 109.46887 * 185.40798 * 11 9 8 37 37 H 1.08997 * 109.47336 * 94.63569 * 15 14 12 38 38 H 1.09005 * 109.47252 * 214.63180 * 15 14 12 39 39 H 1.09003 * 109.46992 * 334.63026 * 15 14 12 40 40 H 1.09006 * 109.46947 * 210.00043 * 16 14 12 41 41 H 1.09001 * 109.47118 * 329.99293 * 16 14 12 42 42 H 0.97002 * 120.00183 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.50633 * 178.54972 * 25 8 7 44 44 H 1.09003 * 109.50731 * 298.67624 * 25 8 7 45 45 H 1.09003 * 109.50786 * 63.08571 * 26 25 8 46 46 H 1.08998 * 109.50452 * 183.17547 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0096 0.5794 0.8434 7 6 4.1576 0.5571 -1.3070 8 7 5.6256 0.6300 -1.3343 9 6 6.1614 0.0025 -2.5497 10 1 5.7563 0.5060 -3.4274 11 6 5.7627 -1.4743 -2.5795 12 6 7.6641 0.1174 -2.5537 13 8 8.2742 0.1283 -1.5056 14 7 8.3298 0.2079 -3.7220 15 6 7.6061 0.0803 -4.9894 16 6 9.7773 0.4339 -3.7246 17 6 10.4929 -0.8922 -3.7094 18 1 9.9262 -1.8115 -3.6985 19 6 11.8711 -0.9319 -3.7095 20 7 12.5612 0.1874 -3.7233 21 14 12.7581 -2.5759 -3.6899 22 1 12.3765 -3.3585 -4.8928 23 1 14.2253 -2.3467 -3.6926 24 1 12.3775 -3.3291 -2.4680 25 6 6.0802 2.0231 -1.2163 26 6 5.5493 2.6185 0.0904 27 8 4.1234 2.5106 0.1128 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 0.5138 0.8899 31 1 1.9500 -0.8401 0.0004 32 1 3.8438 -0.4849 -1.3698 33 1 3.7498 1.1122 -2.1518 34 1 6.0849 -1.9563 -1.6564 35 1 4.6798 -1.5565 -2.6735 36 1 6.2393 -1.9622 -3.4296 37 1 7.3396 1.0712 -5.3570 38 1 8.2403 -0.4202 -5.7211 39 1 6.7000 -0.5051 -4.8330 40 1 10.0570 0.9875 -4.6211 41 1 10.0570 1.0079 -2.8412 42 1 13.5308 0.1595 -3.7230 43 1 7.1699 2.0513 -1.2128 44 1 5.7032 2.6017 -2.0596 45 1 5.9689 2.0733 0.9358 46 1 5.8365 3.6680 0.1552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248461867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:04 Heat of formation + Delta-G solvation = -92.461667 kcal Electronic energy + Delta-G solvation = -27421.429240 eV Core-core repulsion = 23540.106870 eV Total energy + Delta-G solvation = -3881.322370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.67276 -39.57334 -38.38515 -35.93207 -34.89332 -34.78863 -32.69574 -31.83312 -31.31185 -28.03679 -27.61469 -26.45263 -25.86390 -24.80585 -23.51984 -22.05095 -21.03995 -20.48262 -18.62064 -17.76165 -17.00720 -16.70067 -16.57501 -16.33996 -15.61062 -15.37571 -15.34746 -15.02529 -14.65644 -14.43555 -14.35043 -14.11144 -13.73699 -13.29008 -13.15798 -13.00265 -12.65919 -12.50088 -12.29528 -12.20375 -12.02573 -11.76878 -11.74691 -11.58815 -11.30397 -11.16813 -10.91224 -10.80436 -10.59744 -10.18030 -9.98639 -9.84784 -9.66736 -9.49606 -8.88999 -8.45776 -8.40271 -7.68935 -6.06599 -4.11361 2.28976 2.57722 3.23658 3.30116 3.34857 3.36940 3.49281 3.83515 4.01521 4.42135 4.44551 4.56716 4.77797 4.82516 4.87791 4.94829 5.11822 5.13988 5.15325 5.23347 5.28090 5.30718 5.36198 5.43367 5.52310 5.54438 5.65457 5.71408 5.84205 5.86106 5.92085 5.99776 6.11471 6.24146 6.73768 6.78047 6.88191 7.04194 7.14198 7.37641 7.49046 7.89265 7.90138 8.20098 8.35493 8.87005 9.04741 9.53709 11.01510 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026064 B = 0.002965 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.001641 B = 9440.511733 C = 9810.010122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.735 5.735 3 C 0.522 3.478 4 O -0.516 6.516 5 C 0.079 3.921 6 H 0.095 0.905 7 C 0.029 3.971 8 N -0.510 5.510 9 C 0.063 3.937 10 H 0.058 0.942 11 C -0.140 4.140 12 C 0.509 3.491 13 O -0.519 6.519 14 N -0.603 5.603 15 C 0.080 3.920 16 C 0.248 3.752 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C 0.011 3.989 26 C 0.067 3.933 27 O -0.360 6.360 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.404 0.596 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.042 0.958 42 H 0.264 0.736 43 H 0.105 0.895 44 H 0.041 0.959 45 H 0.066 0.934 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.589 -1.753 3.130 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.389 5.389 3 C 0.306 3.694 4 O -0.390 6.390 5 C 0.017 3.983 6 H 0.113 0.887 7 C -0.099 4.099 8 N -0.236 5.236 9 C -0.048 4.048 10 H 0.076 0.924 11 C -0.198 4.198 12 C 0.294 3.706 13 O -0.394 6.394 14 N -0.336 5.336 15 C -0.064 4.064 16 C 0.128 3.872 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.117 4.117 26 C -0.009 4.009 27 O -0.278 6.278 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.238 0.762 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.123 0.877 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.432 -0.965 4.094 21.841 hybrid contribution 0.706 -1.139 -0.939 1.636 sum -20.726 -2.105 3.156 21.070 Atomic orbital electron populations 1.21548 0.79067 1.02384 1.02483 1.45710 1.07913 1.08487 1.76755 1.20210 0.89013 0.83931 0.76217 1.90730 1.69839 1.31195 1.47231 1.21884 0.90893 0.86528 0.98967 0.88741 1.22691 0.89127 1.01654 0.96467 1.61970 1.06698 1.17140 1.37801 1.21739 0.94517 0.97243 0.91306 0.92424 1.21778 1.00837 0.93253 1.03905 1.19979 0.88057 0.78128 0.84449 1.90682 1.69021 1.48706 1.31038 1.48193 1.10908 1.70182 1.04338 1.21690 0.96759 1.00315 0.87609 1.19275 0.72457 0.97149 0.98272 1.21365 0.91299 0.92615 1.51128 0.92526 1.24933 0.97382 0.96725 0.95056 1.69914 1.06978 1.26188 1.50367 0.86559 0.78406 0.83837 0.78623 1.20281 1.21177 1.20141 1.22945 1.03262 0.87614 0.97898 1.22763 0.79406 1.01890 0.96868 1.88076 1.21830 1.23509 1.94344 0.90398 0.92116 0.92120 0.76205 0.88917 0.93428 0.90627 0.92150 0.91208 0.93808 0.90692 0.92365 0.94992 0.94011 0.92638 0.87698 0.94051 0.91526 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.85 0.64 1.18 16 2 N -0.73 -5.41 5.68 -67.08 -0.38 -5.79 16 3 C 0.52 6.04 7.18 -10.99 -0.08 5.97 16 4 O -0.52 -8.25 16.51 -14.28 -0.24 -8.49 16 5 C 0.08 0.91 3.22 -27.83 -0.09 0.82 16 6 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 7 C 0.03 0.32 4.59 -3.71 -0.02 0.30 16 8 N -0.51 -7.09 4.35 -227.72 -0.99 -8.08 16 9 C 0.06 0.92 1.62 -68.86 -0.11 0.81 16 10 H 0.06 0.76 6.75 -51.93 -0.35 0.40 16 11 C -0.14 -1.69 8.56 37.16 0.32 -1.37 16 12 C 0.51 10.13 5.67 -10.99 -0.06 10.07 16 13 O -0.52 -12.59 15.06 5.56 0.08 -12.50 16 14 N -0.60 -12.38 2.86 -182.95 -0.52 -12.90 16 15 C 0.08 1.23 9.88 59.85 0.59 1.82 16 16 C 0.25 6.34 5.14 -5.19 -0.03 6.32 16 17 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 18 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 21 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.01 0.15 5.26 -3.71 -0.02 0.13 16 26 C 0.07 0.87 7.01 37.21 0.26 1.13 16 27 O -0.36 -5.09 10.01 -55.07 -0.55 -5.64 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 1.80 8.70 -40.82 -0.35 1.44 16 32 H 0.09 0.76 6.20 -51.93 -0.32 0.44 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.53 6.67 -51.93 -0.35 0.18 16 36 H 0.07 0.85 7.23 -51.93 -0.38 0.47 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 39 H 0.06 0.72 5.40 -51.93 -0.28 0.44 16 40 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 41 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.10 1.80 6.08 -51.93 -0.32 1.48 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -36.52 370.51 -7.66 -44.19 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.35 Total: -1.17 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 0.98 Total: 13.81 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -1.16 Total: -52.39 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.70 Total: -26.63 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.52 -7.66 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248461867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.276 kcal (2) G-P(sol) polarization free energy of solvation -36.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds