Wall clock time and date at job start Tue Mar 31 2020 04:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00124 * 2 1 4 4 O 1.21282 * 119.99916 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00085 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.51086 * 304.91186 * 5 3 2 7 7 C 1.53101 * 109.50687 * 65.00371 * 5 3 2 8 8 N 1.47006 * 109.26099 * 176.78302 * 7 5 3 9 9 C 1.46900 * 111.00290 * 177.60209 * 8 7 5 10 10 H 1.08999 * 109.46868 * 59.04043 * 9 8 7 11 11 C 1.52998 * 109.47237 * 299.03880 * 9 8 7 12 12 C 1.50703 * 109.47207 * 179.03640 * 9 8 7 13 13 O 1.21282 * 119.99957 * 30.70706 * 12 9 8 14 14 N 1.34773 * 119.99822 * 210.70886 * 12 9 8 15 15 C 1.46497 * 120.00195 * 354.79541 * 14 12 9 16 16 C 1.46498 * 119.99691 * 174.79895 * 14 12 9 17 17 C 1.50700 * 109.47583 * 90.00018 * 16 14 12 18 18 H 1.07997 * 119.99647 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00055 * 179.97438 * 17 16 14 20 20 N 1.31508 * 120.00380 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99705 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47056 * 59.99924 * 21 19 17 23 23 H 1.48502 * 109.46791 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46976 * 299.99646 * 21 19 17 25 25 C 1.47012 * 110.75039 * 301.38368 * 8 7 5 26 26 C 1.53094 * 109.26153 * 58.61578 * 25 8 7 27 27 O 1.43016 * 109.50518 * 184.78010 * 5 3 2 28 28 H 1.09001 * 109.47027 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46549 * 60.00446 * 1 2 3 30 30 H 1.08995 * 109.47630 * 300.00236 * 1 2 3 31 31 H 0.97004 * 120.00130 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.50311 * 296.71431 * 7 5 3 33 33 H 1.08999 * 109.50977 * 56.84208 * 7 5 3 34 34 H 1.08999 * 109.47104 * 305.40811 * 11 9 8 35 35 H 1.09006 * 109.47022 * 65.41110 * 11 9 8 36 36 H 1.08994 * 109.46887 * 185.40798 * 11 9 8 37 37 H 1.08997 * 109.47336 * 94.63569 * 15 14 12 38 38 H 1.09005 * 109.47252 * 214.63180 * 15 14 12 39 39 H 1.09003 * 109.46992 * 334.63026 * 15 14 12 40 40 H 1.09006 * 109.46947 * 210.00043 * 16 14 12 41 41 H 1.09001 * 109.47118 * 329.99293 * 16 14 12 42 42 H 0.97002 * 120.00183 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.50633 * 178.54972 * 25 8 7 44 44 H 1.09003 * 109.50731 * 298.67624 * 25 8 7 45 45 H 1.09003 * 109.50786 * 63.08571 * 26 25 8 46 46 H 1.08998 * 109.50452 * 183.17547 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0096 0.5794 0.8434 7 6 4.1576 0.5571 -1.3070 8 7 5.6256 0.6300 -1.3343 9 6 6.1614 0.0025 -2.5497 10 1 5.7563 0.5060 -3.4274 11 6 5.7627 -1.4743 -2.5795 12 6 7.6641 0.1174 -2.5537 13 8 8.2742 0.1283 -1.5056 14 7 8.3298 0.2079 -3.7220 15 6 7.6061 0.0803 -4.9894 16 6 9.7773 0.4339 -3.7246 17 6 10.4929 -0.8922 -3.7094 18 1 9.9262 -1.8115 -3.6985 19 6 11.8711 -0.9319 -3.7095 20 7 12.5612 0.1874 -3.7233 21 14 12.7581 -2.5759 -3.6899 22 1 12.3765 -3.3585 -4.8928 23 1 14.2253 -2.3467 -3.6926 24 1 12.3775 -3.3291 -2.4680 25 6 6.0802 2.0231 -1.2163 26 6 5.5493 2.6185 0.0904 27 8 4.1234 2.5106 0.1128 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 0.5138 0.8899 31 1 1.9500 -0.8401 0.0004 32 1 3.8438 -0.4849 -1.3698 33 1 3.7498 1.1122 -2.1518 34 1 6.0849 -1.9563 -1.6564 35 1 4.6798 -1.5565 -2.6735 36 1 6.2393 -1.9622 -3.4296 37 1 7.3396 1.0712 -5.3570 38 1 8.2403 -0.4202 -5.7211 39 1 6.7000 -0.5051 -4.8330 40 1 10.0570 0.9875 -4.6211 41 1 10.0570 1.0079 -2.8412 42 1 13.5308 0.1595 -3.7230 43 1 7.1699 2.0513 -1.2128 44 1 5.7032 2.6017 -2.0596 45 1 5.9689 2.0733 0.9358 46 1 5.8365 3.6680 0.1552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248461867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:03 Heat of formation + Delta-G solvation = -121.955174 kcal Electronic energy + Delta-G solvation = -27422.708175 eV Core-core repulsion = 23540.106870 eV Total energy + Delta-G solvation = -3882.601305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.72223 -40.81444 -39.52661 -37.12014 -36.49675 -35.66512 -34.73517 -32.80299 -32.46406 -29.78787 -28.56470 -27.55851 -27.09570 -25.95248 -25.06520 -23.37953 -22.09808 -21.39697 -19.98215 -18.73710 -18.67796 -18.21540 -17.77178 -17.48332 -16.91717 -16.56309 -16.46395 -16.19526 -15.95829 -15.71295 -15.47627 -15.20925 -15.02713 -14.53349 -14.32115 -14.01664 -13.88111 -13.72036 -13.50937 -13.43691 -13.17774 -13.06644 -12.93565 -12.79461 -12.70211 -12.64166 -12.50639 -12.38233 -12.18334 -11.81753 -11.71822 -10.93935 -10.87578 -10.63949 -10.43484 -10.18352 -9.50129 -9.40897 -8.21816 -6.36463 1.37069 1.41160 1.41490 1.48596 1.77144 1.83026 2.16577 2.40637 2.69416 3.00768 3.07861 3.53341 3.63263 3.75729 3.85188 3.98027 4.01067 4.05007 4.21756 4.32301 4.35483 4.42819 4.50849 4.59466 4.65640 4.65973 4.66627 4.77665 4.82361 4.83808 4.91768 4.98816 5.00284 5.20626 5.27043 5.35576 5.55363 5.67590 5.77747 5.86371 5.93740 6.06199 6.47799 6.70414 6.78610 7.15283 7.29159 7.49230 8.85039 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026064 B = 0.002965 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.001641 B = 9440.511733 C = 9810.010122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.713 5.713 3 C 0.523 3.477 4 O -0.569 6.569 5 C 0.075 3.925 6 H 0.109 0.891 7 C 0.036 3.964 8 N -0.522 5.522 9 C 0.075 3.925 10 H 0.081 0.919 11 C -0.137 4.137 12 C 0.502 3.498 13 O -0.574 6.574 14 N -0.612 5.612 15 C 0.075 3.925 16 C 0.262 3.738 17 C -0.539 4.539 18 H 0.054 0.946 19 C 0.006 3.994 20 N -0.930 5.930 21 Si 0.967 3.033 22 H -0.259 1.259 23 H -0.280 1.280 24 H -0.277 1.277 25 C 0.015 3.985 26 C 0.074 3.926 27 O -0.381 6.381 28 H 0.117 0.883 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.422 0.578 32 H 0.128 0.872 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.022 0.978 41 H -0.004 1.004 42 H 0.267 0.733 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.065 0.935 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.933 -4.315 2.319 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.367 5.367 3 C 0.308 3.692 4 O -0.447 6.447 5 C 0.013 3.987 6 H 0.127 0.873 7 C -0.092 4.092 8 N -0.248 5.248 9 C -0.036 4.036 10 H 0.099 0.901 11 C -0.194 4.194 12 C 0.289 3.711 13 O -0.453 6.453 14 N -0.344 5.344 15 C -0.067 4.067 16 C 0.141 3.859 17 C -0.578 4.578 18 H 0.072 0.928 19 C -0.192 4.192 20 N -0.570 5.570 21 Si 0.791 3.209 22 H -0.184 1.184 23 H -0.205 1.205 24 H -0.203 1.203 25 C -0.114 4.114 26 C -0.003 4.003 27 O -0.299 6.299 28 H 0.135 0.865 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.259 0.741 32 H 0.146 0.854 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.040 0.960 41 H 0.014 0.986 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -23.824 -3.589 3.245 24.310 hybrid contribution 1.387 -0.330 -0.663 1.573 sum -22.436 -3.919 2.582 22.922 Atomic orbital electron populations 1.21736 0.77923 1.04674 1.01596 1.45616 1.08640 1.07981 1.74481 1.20261 0.88925 0.84289 0.75774 1.90713 1.70619 1.33213 1.50133 1.22084 0.91039 0.85621 0.99940 0.87320 1.22776 0.86726 1.03696 0.96003 1.61934 1.08722 1.16476 1.37714 1.21693 0.89858 0.99539 0.92547 0.90127 1.21828 1.03718 0.90641 1.03243 1.21017 0.90533 0.76310 0.83198 1.90647 1.70782 1.50943 1.32938 1.48204 1.09206 1.70156 1.06836 1.21970 0.97397 1.02288 0.85045 1.18721 0.76037 0.95687 0.95500 1.21649 0.91921 0.93185 1.51035 0.92767 1.25864 0.98305 1.00571 0.94499 1.70041 1.07325 1.28486 1.51121 0.85480 0.77207 0.79191 0.79020 1.18377 1.20519 1.20260 1.22805 1.01126 0.88558 0.98883 1.22722 0.79147 1.02523 0.95902 1.88060 1.21975 1.25416 1.94438 0.86467 0.92946 0.93169 0.74113 0.85378 0.93445 0.92103 0.87632 0.91114 0.91689 0.91342 0.88609 0.96002 0.98589 0.92443 0.91211 0.93856 0.91715 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.70 127.77 1.37 2.14 16 2 N -0.71 -8.23 5.68 -484.53 -2.75 -10.98 16 3 C 0.52 11.13 7.18 87.66 0.63 11.76 16 4 O -0.57 -17.88 16.51 15.93 0.26 -17.62 16 5 C 0.07 1.57 3.22 29.88 0.10 1.66 16 6 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 7 C 0.04 0.67 4.59 86.32 0.40 1.06 16 8 N -0.52 -13.67 4.35 -874.38 -3.81 -17.48 16 9 C 0.07 2.01 1.62 44.17 0.07 2.08 16 10 H 0.08 1.82 6.75 -2.39 -0.02 1.80 16 11 C -0.14 -2.78 8.56 71.98 0.62 -2.16 16 12 C 0.50 20.13 5.67 87.66 0.50 20.62 16 13 O -0.57 -29.07 15.06 -3.04 -0.05 -29.12 16 14 N -0.61 -25.34 2.86 -851.13 -2.43 -27.78 16 15 C 0.08 2.17 9.88 127.77 1.26 3.43 16 16 C 0.26 14.02 5.14 85.63 0.44 14.46 16 17 C -0.54 -30.80 9.39 25.60 0.24 -30.56 16 18 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 19 C 0.01 0.37 5.46 84.66 0.46 0.83 16 20 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 21 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 C 0.01 0.42 5.26 86.31 0.45 0.88 16 26 C 0.07 1.90 7.01 72.01 0.50 2.41 16 27 O -0.38 -10.55 10.01 -130.02 -1.30 -11.85 16 28 H 0.12 0.17 8.14 -2.39 -0.02 0.16 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.42 1.90 8.70 -92.71 -0.81 1.10 16 32 H 0.13 1.43 6.20 -2.38 -0.01 1.41 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.21 6.67 -2.38 -0.02 1.19 16 36 H 0.07 1.45 7.23 -2.39 -0.02 1.43 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 2.07 8.11 -2.38 -0.02 2.05 16 39 H 0.10 2.03 5.40 -2.39 -0.01 2.01 16 40 H 0.02 1.19 8.07 -2.38 -0.02 1.17 16 41 H 0.00 -0.25 7.50 -2.39 -0.02 -0.27 16 42 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.07 2.54 6.08 -2.38 -0.01 2.53 16 44 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -84.82 370.51 -0.54 -85.36 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.18 Total: 10.22 kcal Atomic # 6 Polarization: 21.57 SS G_CDS: 7.04 Total: 28.61 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -8.70 Total: -112.17 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -1.08 Total: -58.59 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -84.82 -0.54 -85.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248461867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.593 kcal (2) G-P(sol) polarization free energy of solvation -84.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds