Wall clock time and date at job start Tue Mar 31 2020 04:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1 5 5 C 1.50697 * 109.47293 * 270.00491 * 4 3 2 6 6 H 1.07997 * 120.00010 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00091 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00149 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00247 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47351 * 59.99383 * 9 7 5 11 11 H 1.48496 * 109.47133 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46935 * 299.99671 * 9 7 5 13 13 C 1.34784 * 119.99971 * 89.99654 * 3 2 1 14 14 O 1.21283 * 119.99649 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99774 * 359.72768 * 13 3 2 16 16 N 1.46904 * 109.46892 * 179.97438 * 15 13 3 17 17 C 1.48233 * 111.00026 * 284.11094 * 16 15 13 18 18 C 1.51310 * 104.76493 * 214.70669 * 17 16 15 19 19 O 1.21276 * 125.74824 * 196.73153 * 18 17 16 20 20 N 1.34855 * 108.50110 * 16.76647 * 18 17 16 21 21 C 1.46492 * 125.20291 * 180.46259 * 20 18 17 22 22 C 1.53000 * 109.47374 * 269.95286 * 21 20 18 23 23 O 1.42897 * 109.46944 * 64.99805 * 22 21 20 24 24 C 1.42902 * 114.00036 * 180.02562 * 23 22 21 25 25 C 1.46798 * 109.58685 * 0.42271 * 20 18 17 26 26 H 1.08998 * 109.47074 * 300.00425 * 1 2 3 27 27 H 1.09007 * 109.46853 * 59.99785 * 1 2 3 28 28 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47074 * 239.99575 * 2 1 3 30 30 H 1.09008 * 109.46412 * 119.99581 * 2 1 3 31 31 H 1.08997 * 109.46865 * 30.00228 * 4 3 2 32 32 H 1.08998 * 109.47058 * 149.99741 * 4 3 2 33 33 H 0.96995 * 120.00744 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46809 * 299.99238 * 15 13 3 35 35 H 1.08993 * 109.47525 * 59.99679 * 15 13 3 36 36 H 1.09005 * 110.37983 * 333.53000 * 17 16 15 37 37 H 1.09003 * 110.38359 * 95.88740 * 17 16 15 38 38 H 1.08997 * 109.47715 * 29.95292 * 21 20 18 39 39 H 1.09007 * 109.47484 * 149.95587 * 21 20 18 40 40 H 1.09000 * 109.47613 * 185.00256 * 22 21 20 41 41 H 1.09008 * 109.47223 * 305.00465 * 22 21 20 42 42 H 1.08996 * 109.47433 * 300.00744 * 24 23 22 43 43 H 1.09005 * 109.47058 * 60.00430 * 24 23 22 44 44 H 1.09004 * 109.47424 * 179.97438 * 24 23 22 45 45 H 1.09004 * 110.11637 * 223.23228 * 25 20 18 46 46 H 1.08996 * 110.17201 * 101.60703 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1496 2.3903 -2.8773 8 7 3.3497 3.1265 -3.6175 9 14 5.9140 2.0972 -3.4162 10 1 6.1419 0.6407 -3.5940 11 1 6.1615 2.7972 -4.7022 12 1 6.8412 2.6205 -2.3808 13 6 2.2429 2.0166 1.1673 14 8 2.6477 3.1599 1.1672 15 6 1.9858 1.3082 2.4723 16 7 2.3058 2.2076 3.5889 17 6 3.7718 2.3210 3.7764 18 6 3.9599 2.4578 5.2715 19 8 4.9624 2.8557 5.8261 20 7 2.8253 2.0619 5.8836 21 6 2.6053 2.0547 7.3318 22 6 3.0360 0.7037 7.9065 23 8 4.4457 0.5418 7.7374 24 6 4.9534 -0.6947 8.2427 25 6 1.8442 1.6403 4.8763 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.5819 1.6877 -2.0283 32 1 2.0957 3.1410 -1.1384 33 1 3.6757 3.5169 -4.4434 34 1 0.9365 1.0186 2.5279 35 1 2.6121 0.4182 2.5322 36 1 4.2717 1.4237 3.4114 37 1 4.1530 3.2041 3.2636 38 1 3.1924 2.8492 7.7926 39 1 1.5477 2.2173 7.5396 40 1 2.7905 0.6653 8.9678 41 1 2.5130 -0.0970 7.3834 42 1 4.7477 -0.7626 9.3110 43 1 4.4702 -1.5241 7.7263 44 1 6.0296 -0.7409 8.0759 45 1 0.8581 2.0318 5.1265 46 1 1.8110 0.5525 4.8162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338362254.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:38 Heat of formation + Delta-G solvation = -108.262700 kcal Electronic energy + Delta-G solvation = -26972.590950 eV Core-core repulsion = 23090.583396 eV Total energy + Delta-G solvation = -3882.007555 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82198 -40.49078 -38.77855 -38.14008 -36.85660 -35.51371 -34.85707 -31.85595 -31.41224 -29.74281 -29.19396 -27.75336 -27.11642 -25.04805 -24.30634 -23.78935 -23.14238 -20.95770 -19.87426 -18.62645 -18.10671 -18.04919 -17.50467 -17.45997 -16.97993 -16.70781 -16.32978 -16.29797 -16.08533 -15.73851 -15.23304 -14.88265 -14.69243 -14.57281 -14.56610 -14.27066 -13.86542 -13.68172 -13.61869 -13.42759 -13.22196 -13.10212 -12.95960 -12.73312 -12.67788 -12.61129 -12.45017 -12.11607 -12.09452 -11.79297 -11.70720 -11.00067 -10.64583 -10.62751 -10.59027 -10.16861 -9.41193 -9.36949 -8.20870 -6.35397 1.36036 1.40658 1.44073 1.47340 1.80775 1.91524 2.22324 2.40644 2.82503 2.91535 3.08655 3.27138 3.64490 3.89878 4.05574 4.09786 4.16010 4.21811 4.28351 4.33423 4.37962 4.44378 4.47962 4.50290 4.51464 4.57556 4.65393 4.72697 4.83161 4.87376 4.97872 5.06398 5.11607 5.17225 5.26929 5.35056 5.47584 5.60958 5.78139 5.92200 5.98805 6.09450 6.30461 6.73358 6.87953 7.05690 7.31306 7.58649 8.85689 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.003174 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.059809 B = 8819.792620 C = 9559.664459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.963 3.037 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.495 3.505 14 O -0.582 6.582 15 C 0.042 3.958 16 N -0.507 5.507 17 C 0.010 3.990 18 C 0.520 3.480 19 O -0.557 6.557 20 N -0.618 5.618 21 C 0.129 3.871 22 C 0.038 3.962 23 O -0.419 6.419 24 C 0.029 3.971 25 C 0.258 3.742 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.021 0.979 32 H -0.006 1.006 33 H 0.266 0.734 34 H 0.149 0.851 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.141 0.859 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.127 0.873 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 -14.254 23.177 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.337 5.337 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.788 3.212 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.283 3.717 14 O -0.461 6.461 15 C -0.089 4.089 16 N -0.233 5.233 17 C -0.122 4.122 18 C 0.307 3.693 19 O -0.434 6.434 20 N -0.353 5.353 21 C 0.008 3.992 22 C -0.039 4.039 23 O -0.338 6.338 24 C -0.067 4.067 25 C 0.047 3.953 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.122 0.878 31 H 0.039 0.961 32 H 0.012 0.988 33 H 0.075 0.925 34 H 0.167 0.833 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.159 0.841 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.145 0.855 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.536 -12.717 23.174 27.779 hybrid contribution 1.431 -0.453 -0.779 1.691 sum -7.105 -13.170 22.395 26.935 Atomic orbital electron populations 1.22165 0.94371 1.03515 1.01885 1.21779 0.95459 0.81176 1.03973 1.48271 1.64262 1.15176 1.06012 1.18633 0.94990 0.91473 0.80593 1.21709 0.98057 1.31842 1.06390 0.92859 1.25826 1.02134 0.94571 0.96576 1.70039 1.37748 1.34255 1.14829 0.85537 0.79327 0.79080 0.77295 1.18292 1.20442 1.20625 1.21107 0.77649 0.86672 0.86270 1.90672 1.47115 1.20553 1.87796 1.22350 1.06118 0.93502 0.86912 1.65269 1.09281 1.45355 1.03361 1.22976 0.91061 1.04299 0.93815 1.20987 0.82871 0.75746 0.89659 1.90692 1.32111 1.47909 1.72737 1.48557 1.14605 1.64591 1.07509 1.21711 1.04041 0.97093 0.76336 1.23203 0.81594 0.97844 1.01268 1.88045 1.23698 1.39321 1.82753 1.22822 0.99821 0.85420 0.98618 1.23195 0.93221 0.98680 0.80227 0.91430 0.94714 0.88605 0.91375 0.87779 0.96054 0.98794 0.92476 0.83337 0.88560 0.89339 0.89558 0.91266 0.84128 0.89764 0.91405 0.92521 0.93146 0.90482 0.85510 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.24 71.98 0.74 -2.62 16 2 C 0.10 2.64 5.93 86.38 0.51 3.15 16 3 N -0.60 -24.21 2.46 -826.16 -2.03 -26.24 16 4 C 0.26 14.16 5.16 85.63 0.44 14.60 16 5 C -0.54 -31.22 9.39 25.60 0.24 -30.98 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.46 5.46 84.65 0.46 0.92 16 8 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 9 Si 0.96 45.54 29.54 68.60 2.03 47.56 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 13 C 0.49 19.37 7.53 87.65 0.66 20.03 16 14 O -0.58 -29.94 15.19 -3.04 -0.05 -29.98 16 15 C 0.04 0.98 3.71 85.56 0.32 1.30 16 16 N -0.51 -12.98 5.12 -909.03 -4.65 -17.63 16 17 C 0.01 0.30 5.97 85.49 0.51 0.81 16 18 C 0.52 16.23 7.95 87.84 0.70 16.93 16 19 O -0.56 -22.15 17.74 -3.02 -0.05 -22.21 16 20 N -0.62 -12.77 2.93 -829.17 -2.43 -15.20 16 21 C 0.13 1.85 6.43 86.38 0.56 2.41 16 22 C 0.04 0.48 6.28 71.98 0.45 0.93 16 23 O -0.42 -9.14 10.41 -148.98 -1.55 -10.69 16 24 C 0.03 0.43 11.01 113.37 1.25 1.68 16 25 C 0.26 3.90 7.22 170.24 1.23 5.13 16 26 H 0.07 1.19 7.20 -2.39 -0.02 1.18 16 27 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 30 H 0.10 1.92 6.44 -2.38 -0.02 1.90 16 31 H 0.02 1.16 8.07 -2.39 -0.02 1.15 16 32 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 33 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.15 2.21 7.11 -2.39 -0.02 2.19 16 35 H 0.10 1.76 6.90 -2.39 -0.02 1.74 16 36 H 0.09 2.58 7.51 -2.38 -0.02 2.56 16 37 H 0.09 3.41 7.78 -2.39 -0.02 3.39 16 38 H 0.07 1.34 8.02 -2.39 -0.02 1.32 16 39 H 0.14 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.09 0.78 7.79 -2.39 -0.02 0.76 16 Total: -1.00 -89.61 381.99 0.57 -89.03 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.96 Total: 7.64 kcal Atomic # 6 Polarization: 26.21 SS G_CDS: 8.06 Total: 34.28 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -8.82 Total: -115.64 kcal Atomic # 8 Polarization: -61.23 SS G_CDS: -1.65 Total: -62.88 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -89.61 0.57 -89.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338362254.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.228 kcal (2) G-P(sol) polarization free energy of solvation -89.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds