Wall clock time and date at job start Tue Mar 31 2020 04:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.46675 * 2 1 4 4 C 1.42904 * 113.99768 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46908 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47315 * 185.12114 * 5 4 3 7 7 C 1.53004 * 115.54750 * 294.58681 * 6 5 4 8 8 N 1.46502 * 109.46951 * 279.23957 * 7 6 5 9 9 C 1.34771 * 120.00005 * 178.85563 * 8 7 6 10 10 O 1.21591 * 120.00221 * 359.72375 * 9 8 7 11 11 N 1.34775 * 120.00380 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00532 * 179.72742 * 11 9 8 13 13 C 1.50704 * 109.47438 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99974 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00045 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99566 * 179.97438 * 15 13 12 17 17 H 1.07994 * 120.00533 * 359.97438 * 16 15 13 18 18 C 1.38949 * 119.99763 * 179.97438 * 16 15 13 19 19 N 1.31417 * 120.00035 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00317 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46798 * 90.00259 * 20 18 16 22 22 H 1.48496 * 109.47280 * 210.00315 * 20 18 16 23 23 H 1.48507 * 109.47022 * 330.00603 * 20 18 16 24 24 C 1.52991 * 117.51956 * 80.28096 * 6 5 4 25 25 C 1.52991 * 117.50426 * 148.91617 * 6 5 4 26 26 H 1.09007 * 109.47094 * 299.99738 * 1 2 3 27 27 H 1.08998 * 109.47536 * 60.00264 * 1 2 3 28 28 H 1.09003 * 109.46723 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47214 * 240.00072 * 2 1 3 30 30 H 1.08998 * 109.47536 * 119.99736 * 2 1 3 31 31 H 1.08996 * 109.47418 * 59.99530 * 4 3 2 32 32 H 1.09004 * 109.47062 * 299.99637 * 4 3 2 33 33 H 1.09003 * 109.47316 * 65.12157 * 5 4 3 34 34 H 1.09001 * 109.47723 * 305.11955 * 5 4 3 35 35 H 1.08998 * 109.47242 * 159.23727 * 7 6 5 36 36 H 1.09002 * 109.47073 * 39.23507 * 7 6 5 37 37 H 0.96996 * 120.00024 * 358.85435 * 8 7 6 38 38 H 0.97008 * 119.99751 * 359.72161 * 11 9 8 39 39 H 1.09008 * 109.46714 * 299.99729 * 12 11 9 40 40 H 1.09000 * 109.47371 * 59.99525 * 12 11 9 41 41 H 0.96997 * 119.99737 * 359.97438 * 15 13 12 42 42 H 0.96996 * 119.99927 * 179.97438 * 19 18 16 43 43 H 1.09004 * 117.50326 * 214.97648 * 24 6 5 44 44 H 1.09000 * 117.50043 * 359.97438 * 24 6 5 45 45 H 1.09005 * 117.49593 * 359.97043 * 25 6 5 46 46 H 1.09002 * 117.50223 * 144.99787 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9385 -0.0012 6 6 5.3448 3.0609 -0.1306 7 6 6.1536 2.5128 1.0469 8 7 6.1763 3.5028 2.1266 9 6 6.8152 3.2267 3.2807 10 8 7.3685 2.1540 3.4278 11 7 6.8366 4.1376 4.2738 12 6 7.5260 3.8351 5.5306 13 6 7.4019 5.0094 6.4669 14 8 6.7973 6.0017 6.1185 15 7 7.9625 4.9572 7.6914 16 6 7.8499 6.0257 8.5430 17 1 7.3124 6.9094 8.2325 18 6 8.4275 5.9716 9.8056 19 7 9.0820 4.8964 10.1833 20 14 8.2748 7.4277 10.9657 21 1 7.0501 7.2761 11.7918 22 1 9.4656 7.4821 11.8512 23 1 8.1872 8.6825 10.1763 24 6 5.9489 2.9196 -1.5291 25 6 5.8955 4.2915 -0.8538 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8332 0.9768 -0.8907 32 1 3.8339 0.9766 0.8892 33 1 3.5015 3.4013 0.9311 34 1 3.3473 3.4418 -0.8417 35 1 7.1733 2.3057 0.7223 36 1 5.6930 1.5929 1.4072 37 1 5.7315 4.3570 2.0109 38 1 6.3956 4.9936 4.1564 39 1 7.0749 2.9555 5.9898 40 1 8.5794 3.6401 5.3294 41 1 8.4456 4.1636 7.9701 42 1 9.4854 4.8589 11.0646 43 1 6.9225 2.4362 -1.6104 44 1 5.2637 2.7389 -2.3573 45 1 5.1751 5.0137 -1.2380 46 1 6.8339 4.7107 -0.4909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345461375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:00 Heat of formation + Delta-G solvation = -103.125608 kcal Electronic energy + Delta-G solvation = -25306.813367 eV Core-core repulsion = 21425.028574 eV Total energy + Delta-G solvation = -3881.784794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06670 -39.03262 -38.18124 -37.79817 -34.42128 -33.96990 -33.59908 -32.39549 -31.35881 -30.14378 -28.21368 -26.21376 -24.29667 -23.83994 -23.11842 -22.60015 -20.62210 -19.58556 -19.47509 -18.30253 -17.88400 -17.03356 -16.65307 -16.24135 -15.72161 -15.61008 -15.26377 -14.83189 -14.74100 -14.58262 -14.25935 -14.09014 -14.02687 -13.68506 -13.43604 -12.86388 -12.82223 -12.54893 -12.24214 -12.15960 -11.88756 -11.84675 -11.62408 -11.60973 -11.45178 -11.26610 -11.11431 -10.57347 -10.45115 -10.33959 -10.29735 -9.93459 -9.88555 -9.62218 -9.12870 -8.60795 -8.56540 -8.08472 -6.50038 -3.92010 2.73736 3.12677 3.21223 3.23153 3.28569 3.42782 3.54617 3.76959 4.10609 4.29909 4.33299 4.46978 4.58149 4.63268 4.70112 4.82543 4.92278 4.94040 5.01653 5.10787 5.15278 5.18663 5.30363 5.31468 5.40231 5.54255 5.56133 5.57694 5.69116 5.76476 5.78700 5.82057 5.88688 5.94338 6.02880 6.10191 6.52032 6.78150 6.90074 7.13457 7.47356 7.93969 8.26903 8.46859 8.82280 9.06118 9.41172 9.89145 10.66878 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.002096 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.631653 B =13358.559519 C =14105.122564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.392 6.392 4 C 0.064 3.936 5 C -0.078 4.078 6 C -0.144 4.144 7 C 0.177 3.823 8 N -0.746 5.746 9 C 0.704 3.296 10 O -0.600 6.600 11 N -0.724 5.724 12 C 0.129 3.871 13 C 0.429 3.571 14 O -0.598 6.598 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.105 0.895 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 C -0.162 4.162 25 C -0.164 4.164 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.398 0.602 38 H 0.407 0.593 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.061 -7.913 -22.698 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.311 6.311 4 C -0.013 4.013 5 C -0.115 4.115 6 C -0.145 4.145 7 C 0.053 3.947 8 N -0.402 5.402 9 C 0.404 3.596 10 O -0.479 6.479 11 N -0.382 5.382 12 C 0.000 4.000 13 C 0.215 3.785 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.178 4.178 19 N -0.535 5.535 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.200 4.200 25 C -0.201 4.201 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.231 0.769 38 H 0.244 0.756 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.950 -8.131 -22.560 25.963 hybrid contribution 0.079 0.674 0.754 1.014 sum -9.872 -7.458 -21.806 25.071 Atomic orbital electron populations 1.21748 0.93756 1.02244 1.03148 1.22450 0.95582 0.83785 1.00112 1.87859 1.21309 1.26503 1.95476 1.22475 0.80951 0.97375 1.00488 1.20968 0.91545 0.95354 1.03656 1.21613 0.94547 1.04577 0.93714 1.20609 0.99003 0.90914 0.84161 1.45005 1.59683 1.20641 1.14873 1.15851 0.79713 0.83994 0.80057 1.90903 1.51142 1.24179 1.81695 1.44769 1.59287 1.19656 1.14464 1.20776 0.97890 0.97559 0.83740 1.19777 0.85616 0.89151 0.83999 1.90491 1.47421 1.34195 1.76342 1.41788 1.46985 1.17762 1.11915 1.19723 1.33060 0.96231 0.94370 0.87695 1.25330 0.96198 0.98350 0.97918 1.69618 1.34757 1.27826 1.21295 0.85809 0.77762 0.80855 0.79569 1.20279 1.20817 1.19340 1.23060 1.02515 1.00317 0.94061 1.23055 1.03147 0.90919 1.02958 0.91756 0.91933 0.91118 0.93510 0.93299 0.93217 0.92965 0.90385 0.90726 0.91530 0.91199 0.76851 0.75602 0.90059 0.90050 0.77015 0.91611 0.88296 0.88354 0.88311 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.45 6.66 37.16 0.25 0.69 16 3 O -0.39 -3.95 10.34 -35.23 -0.36 -4.31 16 4 C 0.06 0.55 5.70 37.16 0.21 0.76 16 5 C -0.08 -0.62 5.47 -26.73 -0.15 -0.77 16 6 C -0.14 -1.10 1.52 -154.51 -0.24 -1.34 16 7 C 0.18 1.84 5.54 -4.04 -0.02 1.81 16 8 N -0.75 -8.95 5.52 -65.22 -0.36 -9.31 16 9 C 0.70 11.54 8.57 -86.92 -0.74 10.79 16 10 O -0.60 -11.84 16.34 5.29 0.09 -11.76 16 11 N -0.72 -12.34 5.53 -66.41 -0.37 -12.70 16 12 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 13 C 0.43 9.92 7.85 -10.98 -0.09 9.84 16 14 O -0.60 -15.37 15.24 5.54 0.08 -15.28 16 15 N -0.55 -13.73 5.29 -10.96 -0.06 -13.79 16 16 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 17 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 19 N -0.89 -24.00 13.05 55.50 0.72 -23.28 16 20 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 C -0.16 -1.04 9.90 -26.74 -0.26 -1.30 16 25 C -0.16 -1.12 9.85 -26.74 -0.26 -1.38 16 26 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.48 6.96 -51.93 -0.36 0.12 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 36 H 0.07 0.78 6.72 -51.93 -0.35 0.44 16 37 H 0.40 4.00 8.45 -40.82 -0.34 3.65 16 38 H 0.41 6.72 7.45 -40.82 -0.30 6.42 16 39 H 0.08 1.49 8.14 -51.92 -0.42 1.06 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -32.32 389.62 -8.12 -40.44 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -7.52 Total: 15.54 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: -1.19 Total: 12.99 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.06 Total: -59.08 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.19 Total: -31.35 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.32 -8.12 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345461375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.686 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds