Wall clock time and date at job start Tue Mar 31 2020 04:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.46675 * 2 1 4 4 C 1.42904 * 113.99768 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46908 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47315 * 185.12114 * 5 4 3 7 7 C 1.53004 * 115.54750 * 294.58681 * 6 5 4 8 8 N 1.46502 * 109.46951 * 279.23957 * 7 6 5 9 9 C 1.34771 * 120.00005 * 178.85563 * 8 7 6 10 10 O 1.21591 * 120.00221 * 359.72375 * 9 8 7 11 11 N 1.34775 * 120.00380 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00532 * 179.72742 * 11 9 8 13 13 C 1.50704 * 109.47438 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99974 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00045 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99566 * 179.97438 * 15 13 12 17 17 H 1.07994 * 120.00533 * 359.97438 * 16 15 13 18 18 C 1.38949 * 119.99763 * 179.97438 * 16 15 13 19 19 N 1.31417 * 120.00035 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00317 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46798 * 90.00259 * 20 18 16 22 22 H 1.48496 * 109.47280 * 210.00315 * 20 18 16 23 23 H 1.48507 * 109.47022 * 330.00603 * 20 18 16 24 24 C 1.52991 * 117.51956 * 80.28096 * 6 5 4 25 25 C 1.52991 * 117.50426 * 148.91617 * 6 5 4 26 26 H 1.09007 * 109.47094 * 299.99738 * 1 2 3 27 27 H 1.08998 * 109.47536 * 60.00264 * 1 2 3 28 28 H 1.09003 * 109.46723 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47214 * 240.00072 * 2 1 3 30 30 H 1.08998 * 109.47536 * 119.99736 * 2 1 3 31 31 H 1.08996 * 109.47418 * 59.99530 * 4 3 2 32 32 H 1.09004 * 109.47062 * 299.99637 * 4 3 2 33 33 H 1.09003 * 109.47316 * 65.12157 * 5 4 3 34 34 H 1.09001 * 109.47723 * 305.11955 * 5 4 3 35 35 H 1.08998 * 109.47242 * 159.23727 * 7 6 5 36 36 H 1.09002 * 109.47073 * 39.23507 * 7 6 5 37 37 H 0.96996 * 120.00024 * 358.85435 * 8 7 6 38 38 H 0.97008 * 119.99751 * 359.72161 * 11 9 8 39 39 H 1.09008 * 109.46714 * 299.99729 * 12 11 9 40 40 H 1.09000 * 109.47371 * 59.99525 * 12 11 9 41 41 H 0.96997 * 119.99737 * 359.97438 * 15 13 12 42 42 H 0.96996 * 119.99927 * 179.97438 * 19 18 16 43 43 H 1.09004 * 117.50326 * 214.97648 * 24 6 5 44 44 H 1.09000 * 117.50043 * 359.97438 * 24 6 5 45 45 H 1.09005 * 117.49593 * 359.97043 * 25 6 5 46 46 H 1.09002 * 117.50223 * 144.99787 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9385 -0.0012 6 6 5.3448 3.0609 -0.1306 7 6 6.1536 2.5128 1.0469 8 7 6.1763 3.5028 2.1266 9 6 6.8152 3.2267 3.2807 10 8 7.3685 2.1540 3.4278 11 7 6.8366 4.1376 4.2738 12 6 7.5260 3.8351 5.5306 13 6 7.4019 5.0094 6.4669 14 8 6.7973 6.0017 6.1185 15 7 7.9625 4.9572 7.6914 16 6 7.8499 6.0257 8.5430 17 1 7.3124 6.9094 8.2325 18 6 8.4275 5.9716 9.8056 19 7 9.0820 4.8964 10.1833 20 14 8.2748 7.4277 10.9657 21 1 7.0501 7.2761 11.7918 22 1 9.4656 7.4821 11.8512 23 1 8.1872 8.6825 10.1763 24 6 5.9489 2.9196 -1.5291 25 6 5.8955 4.2915 -0.8538 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8332 0.9768 -0.8907 32 1 3.8339 0.9766 0.8892 33 1 3.5015 3.4013 0.9311 34 1 3.3473 3.4418 -0.8417 35 1 7.1733 2.3057 0.7223 36 1 5.6930 1.5929 1.4072 37 1 5.7315 4.3570 2.0109 38 1 6.3956 4.9936 4.1564 39 1 7.0749 2.9555 5.9898 40 1 8.5794 3.6401 5.3294 41 1 8.4456 4.1636 7.9701 42 1 9.4854 4.8589 11.0646 43 1 6.9225 2.4362 -1.6104 44 1 5.2637 2.7389 -2.3573 45 1 5.1751 5.0137 -1.2380 46 1 6.8339 4.7107 -0.4909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345461375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:59 Heat of formation + Delta-G solvation = -126.781995 kcal Electronic energy + Delta-G solvation = -25307.839185 eV Core-core repulsion = 21425.028574 eV Total energy + Delta-G solvation = -3882.810611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28919 -40.20490 -39.60023 -38.55261 -36.24302 -35.25613 -35.06832 -33.36181 -32.97799 -30.76921 -29.63404 -27.51300 -26.05439 -24.48417 -23.70001 -23.18259 -21.90146 -21.36868 -20.33245 -20.09411 -19.28710 -17.70836 -17.54327 -17.41020 -17.15601 -16.92713 -16.48439 -16.26179 -15.92030 -15.84642 -15.39172 -15.31314 -15.08876 -14.98580 -14.53942 -13.96887 -13.92878 -13.53937 -13.39866 -13.33629 -13.16236 -12.90212 -12.82749 -12.45265 -12.36970 -12.27060 -12.12393 -12.05736 -11.90728 -11.56598 -11.51663 -11.15633 -10.78702 -10.56794 -10.55197 -10.40812 -10.09769 -9.79467 -8.50539 -6.00760 1.36846 1.42681 1.53769 1.60467 1.90208 2.12195 2.28754 2.56647 2.88156 3.10014 3.16601 3.39296 3.63715 3.70598 3.94028 4.02343 4.13871 4.21641 4.24525 4.28443 4.43128 4.45640 4.46434 4.47014 4.50533 4.66014 4.75212 4.81274 4.84496 5.00625 5.02399 5.07338 5.13674 5.20166 5.26584 5.29361 5.31691 5.39186 5.47944 5.91796 5.96634 6.26448 6.48578 7.03472 7.03888 7.43163 7.53711 7.94943 8.66358 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.002096 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.631653 B =13358.559519 C =14105.122564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.413 6.413 4 C 0.063 3.937 5 C -0.072 4.072 6 C -0.147 4.147 7 C 0.177 3.823 8 N -0.728 5.728 9 C 0.704 3.296 10 O -0.634 6.634 11 N -0.724 5.724 12 C 0.142 3.858 13 C 0.434 3.566 14 O -0.624 6.624 15 N -0.560 5.560 16 C -0.337 4.337 17 H 0.087 0.913 18 C -0.012 4.012 19 N -0.916 5.916 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.150 4.150 25 C -0.160 4.160 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.409 0.591 38 H 0.410 0.590 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.401 -7.793 -23.833 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.333 6.333 4 C -0.014 4.014 5 C -0.109 4.109 6 C -0.147 4.147 7 C 0.053 3.947 8 N -0.384 5.384 9 C 0.403 3.597 10 O -0.516 6.516 11 N -0.382 5.382 12 C 0.013 3.987 13 C 0.221 3.779 14 O -0.512 6.512 15 N -0.195 5.195 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.213 4.213 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.187 4.187 25 C -0.197 4.197 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.245 0.755 38 H 0.248 0.752 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.120 0.880 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.309 -8.014 -23.735 27.089 hybrid contribution 0.160 0.589 1.024 1.193 sum -10.149 -7.424 -22.710 25.959 Atomic orbital electron populations 1.21767 0.92968 1.03332 1.02657 1.22633 0.96332 0.83037 1.00677 1.87833 1.22013 1.27863 1.95585 1.22522 0.80487 0.97779 1.00574 1.20904 0.91678 0.94996 1.03328 1.21405 0.93931 1.05913 0.93466 1.20701 0.99245 0.90354 0.84397 1.44946 1.58214 1.21422 1.13801 1.15957 0.79741 0.83259 0.80705 1.90880 1.52754 1.25483 1.82448 1.44690 1.59388 1.19997 1.14133 1.20576 0.98876 0.95567 0.83641 1.20418 0.83971 0.89739 0.83788 1.90468 1.48188 1.35675 1.76854 1.41836 1.47678 1.17532 1.12454 1.19735 1.34502 0.96642 0.95706 0.89549 1.26148 0.95340 1.00951 0.98831 1.69684 1.34861 1.29150 1.21912 0.84856 0.78183 0.77430 0.77432 1.19571 1.19658 1.19437 1.23153 1.02750 0.99633 0.93179 1.23108 1.03047 0.91111 1.02441 0.92718 0.91903 0.89276 0.92188 0.93463 0.91895 0.94067 0.91685 0.89854 0.91898 0.92150 0.75508 0.75240 0.89170 0.89045 0.76695 0.91081 0.87963 0.86957 0.87175 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.05 0.73 6.66 71.98 0.48 1.21 16 3 O -0.41 -8.04 10.34 -148.98 -1.54 -9.58 16 4 C 0.06 1.02 5.70 71.98 0.41 1.43 16 5 C -0.07 -1.06 5.47 30.59 0.17 -0.89 16 6 C -0.15 -2.01 1.52 -52.18 -0.08 -2.09 16 7 C 0.18 3.51 5.54 86.38 0.48 3.99 16 8 N -0.73 -16.90 5.52 -478.53 -2.64 -19.54 16 9 C 0.70 22.66 8.57 179.06 1.53 24.19 16 10 O -0.63 -24.81 16.34 -4.00 -0.07 -24.87 16 11 N -0.72 -24.29 5.53 -482.29 -2.67 -26.96 16 12 C 0.14 5.31 6.15 85.63 0.53 5.84 16 13 C 0.43 20.19 7.85 87.66 0.69 20.88 16 14 O -0.62 -32.34 15.24 -3.08 -0.05 -32.38 16 15 N -0.56 -28.30 5.29 -306.98 -1.62 -29.92 16 16 C -0.34 -18.61 9.68 84.04 0.81 -17.80 16 17 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 18 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 19 N -0.92 -48.88 13.05 21.66 0.28 -48.59 16 20 Si 1.00 41.89 29.55 68.60 2.03 43.92 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 C -0.15 -1.56 9.90 30.59 0.30 -1.25 16 25 C -0.16 -1.84 9.85 30.59 0.30 -1.54 16 26 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.04 0.75 6.96 -2.38 -0.02 0.73 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 35 H 0.06 1.32 7.94 -2.39 -0.02 1.30 16 36 H 0.06 1.34 6.72 -2.39 -0.02 1.33 16 37 H 0.41 7.77 8.45 -92.71 -0.78 6.98 16 38 H 0.41 13.35 7.45 -92.70 -0.69 12.66 16 39 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 40 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 42 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 43 H 0.10 1.03 8.08 -2.38 -0.02 1.01 16 44 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -68.58 389.62 -0.64 -69.23 By element: Atomic # 1 Polarization: 47.21 SS G_CDS: -1.20 Total: 46.01 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: 6.83 Total: 32.69 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -6.65 Total: -125.01 kcal Atomic # 8 Polarization: -65.18 SS G_CDS: -1.65 Total: -66.83 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -68.58 -0.64 -69.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345461375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.554 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds