Wall clock time and date at job start Tue Mar 31 2020 04:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46912 * 2 1 4 4 C 1.53005 * 109.46928 * 240.00174 * 2 1 3 5 5 C 1.53007 * 109.46801 * 295.38555 * 4 2 1 6 6 H 1.08995 * 109.67857 * 62.76279 * 5 4 2 7 7 C 1.53297 * 109.68215 * 302.24390 * 5 4 2 8 8 O 1.42958 * 109.22109 * 187.97871 * 7 5 4 9 9 C 1.42955 * 114.16913 * 62.58050 * 8 7 5 10 10 C 1.53298 * 109.22425 * 297.41930 * 9 8 7 11 11 N 1.47153 * 108.38470 * 52.30193 * 10 9 8 12 12 C 1.34770 * 120.98423 * 129.48730 * 11 10 9 13 13 O 1.21583 * 120.00171 * 174.82057 * 12 11 10 14 14 N 1.34776 * 119.99812 * 354.81620 * 12 11 10 15 15 C 1.46505 * 120.00134 * 185.01527 * 14 12 11 16 16 C 1.50697 * 109.47129 * 180.02562 * 15 14 12 17 17 O 1.21289 * 120.00442 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99588 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99759 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00014 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99876 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99504 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00210 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46815 * 89.99935 * 23 21 19 25 25 H 1.48497 * 109.47141 * 210.00003 * 23 21 19 26 26 H 1.48503 * 109.46789 * 330.00032 * 23 21 19 27 27 H 1.08998 * 109.47086 * 295.40533 * 1 2 3 28 28 H 1.09004 * 109.46930 * 175.40016 * 1 2 3 29 29 H 1.08999 * 109.46699 * 55.40062 * 1 2 3 30 30 H 1.08998 * 109.46881 * 120.00215 * 2 1 3 31 31 H 1.09001 * 109.47317 * 60.00536 * 3 2 1 32 32 H 1.09009 * 109.46439 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47523 * 299.99822 * 3 2 1 34 34 H 1.08991 * 109.47365 * 55.38418 * 4 2 1 35 35 H 1.08998 * 109.46843 * 175.39137 * 4 2 1 36 36 H 1.08998 * 109.51352 * 307.90276 * 7 5 4 37 37 H 1.09003 * 109.51352 * 68.05319 * 7 5 4 38 38 H 1.09006 * 109.51502 * 57.34581 * 9 8 7 39 39 H 1.09007 * 109.51280 * 177.49363 * 9 8 7 40 40 H 1.09000 * 109.68214 * 172.02685 * 10 9 8 41 41 H 1.08997 * 109.68081 * 292.58027 * 10 9 8 42 42 H 0.96995 * 120.00039 * 5.02347 * 14 12 11 43 43 H 1.08993 * 109.47528 * 300.00964 * 15 14 12 44 44 H 1.09007 * 109.46355 * 60.00348 * 15 14 12 45 45 H 0.96998 * 120.00159 * 0.02562 * 18 16 15 46 46 H 0.97001 * 119.99516 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6269 -2.1934 -1.1926 6 1 0.5397 -2.2700 -1.1996 7 6 2.1816 -2.8365 0.0836 8 8 1.9518 -4.2468 0.0381 9 6 2.6172 -4.9138 -1.0370 10 6 2.0848 -4.3771 -2.3706 11 7 2.1825 -2.9089 -2.3522 12 6 2.7631 -2.2395 -3.3676 13 8 2.7509 -1.0237 -3.3799 14 7 3.3574 -2.9176 -4.3693 15 6 4.0833 -2.1925 -5.4151 16 6 4.6487 -3.1753 -6.4077 17 8 4.4632 -4.3644 -6.2569 18 7 5.3605 -2.7329 -7.4633 19 6 5.8745 -3.6270 -8.3667 20 1 5.7093 -4.6858 -8.2323 21 6 6.6088 -3.1709 -9.4546 22 7 7.1009 -4.0280 -10.3207 23 14 6.8951 -1.3397 -9.6866 24 1 8.1460 -0.9424 -8.9919 25 1 7.0161 -1.0373 -11.1354 26 1 5.7509 -0.5837 -9.1170 27 1 -0.3633 0.4409 0.9283 28 1 -0.3633 -1.0244 -0.0824 29 1 -0.3633 0.5836 -0.8459 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6108 -0.2574 -2.1373 35 1 3.1269 -0.6503 -1.2915 36 1 3.2523 -2.6441 0.1525 37 1 1.6783 -2.4134 0.9530 38 1 3.6895 -4.7291 -0.9722 39 1 2.4272 -5.9854 -0.9739 40 1 2.6823 -4.7745 -3.1911 41 1 1.0437 -4.6742 -2.4966 42 1 3.3045 -3.8857 -4.3978 43 1 3.4017 -1.5123 -5.9256 44 1 4.8959 -1.6223 -4.9646 45 1 5.5092 -1.7820 -7.5838 46 1 7.6132 -3.7096 -11.0804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358267618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:12 Heat of formation + Delta-G solvation = -94.490977 kcal Electronic energy + Delta-G solvation = -27097.047019 eV Core-core repulsion = 23215.636652 eV Total energy + Delta-G solvation = -3881.410368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.92166 -38.95003 -38.16855 -36.86050 -34.78856 -34.53810 -33.79770 -31.85179 -31.65141 -28.87143 -27.41370 -27.20423 -26.32765 -24.41621 -23.34099 -22.28541 -20.18368 -19.80963 -19.57545 -18.70758 -17.85021 -16.72119 -16.48268 -15.94875 -15.80086 -15.46370 -15.19732 -14.93281 -14.85658 -14.66627 -14.40349 -14.15156 -13.61855 -13.53062 -13.33710 -13.08347 -12.65816 -12.50601 -12.36026 -12.19924 -12.14813 -12.06379 -11.78112 -11.56501 -11.32863 -11.25673 -10.98870 -10.71481 -10.66728 -10.66328 -10.38173 -10.08660 -9.72438 -9.20425 -8.95626 -8.79995 -8.48332 -8.32901 -6.43215 -3.95893 2.48648 2.97766 3.02477 3.10818 3.22666 3.53861 3.54338 3.83880 4.01538 4.45412 4.52512 4.63467 4.71800 4.78026 4.79402 4.87776 4.96674 5.02157 5.11908 5.19051 5.28303 5.41491 5.47261 5.51280 5.55099 5.59747 5.63439 5.70031 5.75731 5.76610 5.82596 5.89152 5.94170 6.06909 6.25618 6.28706 6.51557 6.70482 6.83651 6.90076 7.42280 7.97195 8.02955 8.41594 8.66759 8.79102 9.27244 9.60581 10.68919 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.003019 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.575421 B = 9273.076937 C =10464.950412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.143 4.143 4 C -0.106 4.106 5 C 0.132 3.868 6 H 0.079 0.921 7 C 0.049 3.951 8 O -0.381 6.381 9 C 0.048 3.952 10 C 0.074 3.926 11 N -0.633 5.633 12 C 0.711 3.289 13 O -0.585 6.585 14 N -0.726 5.726 15 C 0.126 3.874 16 C 0.438 3.562 17 O -0.581 6.581 18 N -0.575 5.575 19 C -0.310 4.310 20 H 0.121 0.879 21 C 0.045 3.955 22 N -0.874 5.874 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.405 0.595 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.375 0.625 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.732 6.293 20.731 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 C -0.200 4.200 4 C -0.143 4.143 5 C 0.029 3.971 6 H 0.097 0.903 7 C -0.029 4.029 8 O -0.299 6.299 9 C -0.030 4.030 10 C -0.050 4.050 11 N -0.372 5.372 12 C 0.412 3.588 13 O -0.465 6.465 14 N -0.386 5.386 15 C -0.003 4.003 16 C 0.224 3.776 17 O -0.465 6.465 18 N -0.213 5.213 19 C -0.439 4.439 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.513 5.513 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.076 0.924 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.246 0.754 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.208 0.792 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.805 6.232 20.696 24.164 hybrid contribution 0.522 0.945 -0.701 1.287 sum -10.283 7.177 19.995 23.602 Atomic orbital electron populations 1.21910 0.95430 1.01754 1.01606 1.21353 0.95853 0.96776 0.98613 1.21767 1.00970 0.95768 1.01490 1.22171 1.02229 0.91645 0.98256 1.21853 0.97973 0.93222 0.84099 0.90344 1.23193 1.00678 0.81204 0.97831 1.87951 1.72447 1.19958 1.49512 1.22987 0.96584 0.97620 0.85818 1.22386 1.02812 0.80433 0.99372 1.47298 1.63003 1.06204 1.20652 1.15774 0.78281 0.85156 0.79549 1.90897 1.65463 1.11225 1.78868 1.45042 1.56770 1.11243 1.25561 1.20804 0.96607 0.94104 0.88778 1.19651 0.84470 0.89258 0.84227 1.90526 1.62971 1.16700 1.76327 1.42115 1.47641 1.08592 1.22956 1.19436 1.29820 0.92488 1.02140 0.86091 1.25069 0.96635 0.98482 0.95707 1.69621 1.34292 1.34226 1.13149 0.86669 0.79236 0.84540 0.79047 1.19385 1.19966 1.19196 0.92998 0.92625 0.92546 0.91658 0.93071 0.92786 0.92526 0.87839 0.91166 0.92589 0.87635 0.92395 0.87452 0.88746 0.90373 0.75450 0.89802 0.89978 0.79221 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.05 37.16 0.34 -0.84 16 2 C -0.11 -0.93 2.66 -90.62 -0.24 -1.17 16 3 C -0.14 -1.23 9.19 37.16 0.34 -0.89 16 4 C -0.11 -1.19 2.69 -26.72 -0.07 -1.26 16 5 C 0.13 1.43 2.91 -67.42 -0.20 1.23 16 6 H 0.08 0.82 6.60 -51.93 -0.34 0.48 16 7 C 0.05 0.46 5.61 37.31 0.21 0.67 16 8 O -0.38 -4.01 10.74 -35.23 -0.38 -4.39 16 9 C 0.05 0.44 6.98 37.31 0.26 0.70 16 10 C 0.07 0.76 6.63 -3.53 -0.02 0.74 16 11 N -0.63 -7.89 3.02 -170.43 -0.51 -8.41 16 12 C 0.71 10.94 8.13 -86.93 -0.71 10.23 16 13 O -0.59 -10.07 12.09 5.29 0.06 -10.01 16 14 N -0.73 -11.64 5.44 -66.42 -0.36 -12.00 16 15 C 0.13 2.16 6.16 -5.19 -0.03 2.12 16 16 C 0.44 9.50 7.85 -10.98 -0.09 9.41 16 17 O -0.58 -14.42 15.24 5.55 0.08 -14.34 16 18 N -0.58 -13.23 5.09 -10.96 -0.06 -13.28 16 19 C -0.31 -8.47 10.16 -14.93 -0.15 -8.62 16 20 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 21 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 22 N -0.87 -24.79 13.96 55.50 0.77 -24.02 16 23 Si 0.88 18.85 27.74 -169.99 -4.71 14.13 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.23 6.52 56.52 0.37 -4.87 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.42 6.41 -51.93 -0.33 0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.50 6.34 -51.93 -0.33 0.17 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 1.44 6.20 -51.93 -0.32 1.12 16 35 H 0.07 0.93 7.36 -51.93 -0.38 0.54 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.81 6.78 -51.93 -0.35 0.46 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.99 5.66 -51.93 -0.29 0.70 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.41 6.43 4.95 -40.82 -0.20 6.23 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 46 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -31.70 358.91 -7.15 -38.85 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -7.00 Total: 14.62 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -0.46 Total: 13.43 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.16 Total: -57.71 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.23 Total: -28.74 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.71 Total: 14.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.70 -7.15 -38.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358267618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.645 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds