Wall clock time and date at job start Tue Mar 31 2020 04:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46912 * 2 1 4 4 C 1.53005 * 109.46928 * 240.00174 * 2 1 3 5 5 C 1.53007 * 109.46801 * 295.38555 * 4 2 1 6 6 H 1.08995 * 109.67857 * 62.76279 * 5 4 2 7 7 C 1.53297 * 109.68215 * 302.24390 * 5 4 2 8 8 O 1.42958 * 109.22109 * 187.97871 * 7 5 4 9 9 C 1.42955 * 114.16913 * 62.58050 * 8 7 5 10 10 C 1.53298 * 109.22425 * 297.41930 * 9 8 7 11 11 N 1.47153 * 108.38470 * 52.30193 * 10 9 8 12 12 C 1.34770 * 120.98423 * 129.48730 * 11 10 9 13 13 O 1.21583 * 120.00171 * 174.82057 * 12 11 10 14 14 N 1.34776 * 119.99812 * 354.81620 * 12 11 10 15 15 C 1.46505 * 120.00134 * 185.01527 * 14 12 11 16 16 C 1.50697 * 109.47129 * 180.02562 * 15 14 12 17 17 O 1.21289 * 120.00442 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99588 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99759 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00014 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99876 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99504 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00210 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46815 * 89.99935 * 23 21 19 25 25 H 1.48497 * 109.47141 * 210.00003 * 23 21 19 26 26 H 1.48503 * 109.46789 * 330.00032 * 23 21 19 27 27 H 1.08998 * 109.47086 * 295.40533 * 1 2 3 28 28 H 1.09004 * 109.46930 * 175.40016 * 1 2 3 29 29 H 1.08999 * 109.46699 * 55.40062 * 1 2 3 30 30 H 1.08998 * 109.46881 * 120.00215 * 2 1 3 31 31 H 1.09001 * 109.47317 * 60.00536 * 3 2 1 32 32 H 1.09009 * 109.46439 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47523 * 299.99822 * 3 2 1 34 34 H 1.08991 * 109.47365 * 55.38418 * 4 2 1 35 35 H 1.08998 * 109.46843 * 175.39137 * 4 2 1 36 36 H 1.08998 * 109.51352 * 307.90276 * 7 5 4 37 37 H 1.09003 * 109.51352 * 68.05319 * 7 5 4 38 38 H 1.09006 * 109.51502 * 57.34581 * 9 8 7 39 39 H 1.09007 * 109.51280 * 177.49363 * 9 8 7 40 40 H 1.09000 * 109.68214 * 172.02685 * 10 9 8 41 41 H 1.08997 * 109.68081 * 292.58027 * 10 9 8 42 42 H 0.96995 * 120.00039 * 5.02347 * 14 12 11 43 43 H 1.08993 * 109.47528 * 300.00964 * 15 14 12 44 44 H 1.09007 * 109.46355 * 60.00348 * 15 14 12 45 45 H 0.96998 * 120.00159 * 0.02562 * 18 16 15 46 46 H 0.97001 * 119.99516 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6269 -2.1934 -1.1926 6 1 0.5397 -2.2700 -1.1996 7 6 2.1816 -2.8365 0.0836 8 8 1.9518 -4.2468 0.0381 9 6 2.6172 -4.9138 -1.0370 10 6 2.0848 -4.3771 -2.3706 11 7 2.1825 -2.9089 -2.3522 12 6 2.7631 -2.2395 -3.3676 13 8 2.7509 -1.0237 -3.3799 14 7 3.3574 -2.9176 -4.3693 15 6 4.0833 -2.1925 -5.4151 16 6 4.6487 -3.1753 -6.4077 17 8 4.4632 -4.3644 -6.2569 18 7 5.3605 -2.7329 -7.4633 19 6 5.8745 -3.6270 -8.3667 20 1 5.7093 -4.6858 -8.2323 21 6 6.6088 -3.1709 -9.4546 22 7 7.1009 -4.0280 -10.3207 23 14 6.8951 -1.3397 -9.6866 24 1 8.1460 -0.9424 -8.9919 25 1 7.0161 -1.0373 -11.1354 26 1 5.7509 -0.5837 -9.1170 27 1 -0.3633 0.4409 0.9283 28 1 -0.3633 -1.0244 -0.0824 29 1 -0.3633 0.5836 -0.8459 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6108 -0.2574 -2.1373 35 1 3.1269 -0.6503 -1.2915 36 1 3.2523 -2.6441 0.1525 37 1 1.6783 -2.4134 0.9530 38 1 3.6895 -4.7291 -0.9722 39 1 2.4272 -5.9854 -0.9739 40 1 2.6823 -4.7745 -3.1911 41 1 1.0437 -4.6742 -2.4966 42 1 3.3045 -3.8857 -4.3978 43 1 3.4017 -1.5123 -5.9256 44 1 4.8959 -1.6223 -4.9646 45 1 5.5092 -1.7820 -7.5838 46 1 7.6132 -3.7096 -11.0804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358267618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:11 Heat of formation + Delta-G solvation = -117.941956 kcal Electronic energy + Delta-G solvation = -27098.063930 eV Core-core repulsion = 23215.636652 eV Total energy + Delta-G solvation = -3882.427279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.97133 -40.48954 -39.40909 -37.67334 -36.28717 -35.79108 -35.25691 -33.84083 -32.50481 -30.02523 -28.62189 -27.96655 -27.15421 -26.20053 -24.18938 -23.28695 -21.51693 -21.04308 -20.81854 -20.41004 -19.06911 -17.74802 -17.49299 -17.32017 -17.07228 -16.83465 -16.35335 -16.12529 -16.00454 -15.77006 -15.40395 -15.37129 -14.94474 -14.71944 -14.48532 -14.22262 -14.11836 -13.97101 -13.61600 -13.40047 -13.04645 -12.97348 -12.85549 -12.54400 -12.45578 -12.33793 -12.19132 -12.01016 -11.73431 -11.59060 -11.51197 -11.41981 -11.21669 -10.66695 -10.34557 -10.28650 -10.19378 -9.46588 -8.46420 -6.08369 1.30472 1.33336 1.39470 1.44357 1.77326 2.05028 2.19725 2.60168 2.79838 2.95669 3.10017 3.65693 3.79823 3.91191 3.97590 4.02305 4.06939 4.14599 4.17344 4.25628 4.37675 4.42859 4.43964 4.53041 4.67090 4.77769 4.80427 4.85098 4.87330 5.01010 5.06625 5.15491 5.17269 5.25184 5.34772 5.46257 5.49755 5.52679 5.70966 5.79419 5.87741 6.07013 6.47829 6.76899 6.83455 7.27069 7.47195 7.76769 8.69988 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.003019 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.575421 B = 9273.076937 C =10464.950412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.143 4.143 4 C -0.094 4.094 5 C 0.129 3.871 6 H 0.086 0.914 7 C 0.053 3.947 8 O -0.388 6.388 9 C 0.049 3.951 10 C 0.070 3.930 11 N -0.631 5.631 12 C 0.707 3.293 13 O -0.606 6.606 14 N -0.731 5.731 15 C 0.139 3.861 16 C 0.446 3.554 17 O -0.615 6.615 18 N -0.577 5.577 19 C -0.331 4.331 20 H 0.064 0.936 21 C -0.008 4.008 22 N -0.926 5.926 23 Si 0.958 3.042 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.233 1.233 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.129 0.871 38 H 0.053 0.947 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.406 0.594 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.392 0.608 46 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.619 8.369 22.743 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.200 4.200 4 C -0.132 4.132 5 C 0.026 3.974 6 H 0.104 0.896 7 C -0.025 4.025 8 O -0.306 6.306 9 C -0.028 4.028 10 C -0.053 4.053 11 N -0.369 5.369 12 C 0.409 3.591 13 O -0.486 6.486 14 N -0.391 5.391 15 C 0.011 3.989 16 C 0.233 3.767 17 O -0.501 6.501 18 N -0.217 5.217 19 C -0.460 4.460 20 H 0.082 0.918 21 C -0.208 4.208 22 N -0.565 5.565 23 Si 0.778 3.222 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.156 1.156 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.146 0.854 38 H 0.071 0.929 39 H 0.149 0.851 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.245 0.755 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.228 0.772 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.720 8.299 22.754 26.907 hybrid contribution 0.739 0.172 -1.258 1.470 sum -10.981 8.471 21.495 25.581 Atomic orbital electron populations 1.21888 0.94567 1.01985 1.02004 1.21325 0.96486 0.96545 0.97731 1.21771 1.00623 0.95862 1.01750 1.21935 1.00543 0.92162 0.98518 1.22024 0.98356 0.92897 0.84089 0.89613 1.23237 1.00640 0.80869 0.97710 1.87949 1.72596 1.20307 1.49757 1.23072 0.96164 0.98776 0.84794 1.22549 1.03592 0.79090 1.00029 1.47416 1.62054 1.07220 1.20219 1.15885 0.78392 0.84969 0.79834 1.90906 1.66279 1.12066 1.79397 1.45044 1.57130 1.11215 1.25723 1.20679 0.97489 0.92740 0.88038 1.20493 0.82689 0.89548 0.83972 1.90514 1.63658 1.18844 1.77046 1.41917 1.48192 1.08822 1.22768 1.19027 1.31766 0.90972 1.04220 0.91802 1.26059 0.95430 1.04770 0.94496 1.69782 1.35316 1.37375 1.14065 0.85452 0.80621 0.76901 0.79199 1.18057 1.19848 1.15635 0.91472 0.92252 0.93524 0.90016 0.91422 0.93360 0.93645 0.90631 0.93375 0.93025 0.85351 0.92861 0.85131 0.89246 0.89151 0.75454 0.88178 0.88011 0.77227 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.05 71.98 0.65 -1.35 16 2 C -0.10 -1.58 2.66 -10.79 -0.03 -1.61 16 3 C -0.14 -2.26 9.19 71.98 0.66 -1.60 16 4 C -0.09 -2.04 2.69 30.60 0.08 -1.96 16 5 C 0.13 2.59 2.91 44.97 0.13 2.72 16 6 H 0.09 1.63 6.60 -2.39 -0.02 1.61 16 7 C 0.05 0.88 5.61 72.08 0.40 1.29 16 8 O -0.39 -7.24 10.74 -148.98 -1.60 -8.84 16 9 C 0.05 0.82 6.98 72.08 0.50 1.32 16 10 C 0.07 1.36 6.63 86.35 0.57 1.93 16 11 N -0.63 -15.06 3.02 -811.38 -2.45 -17.51 16 12 C 0.71 21.21 8.13 179.06 1.46 22.66 16 13 O -0.61 -20.46 12.09 -3.98 -0.05 -20.51 16 14 N -0.73 -22.85 5.44 -482.30 -2.63 -25.48 16 15 C 0.14 4.56 6.16 85.63 0.53 5.09 16 16 C 0.45 19.27 7.85 87.65 0.69 19.96 16 17 O -0.61 -31.30 15.24 -3.06 -0.05 -31.34 16 18 N -0.58 -26.34 5.09 -306.98 -1.56 -27.90 16 19 C -0.33 -18.65 10.16 84.04 0.85 -17.80 16 20 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 21 C -0.01 -0.40 5.50 84.93 0.47 0.06 16 22 N -0.93 -54.14 13.96 21.66 0.30 -53.84 16 23 Si 0.96 37.89 27.74 68.60 1.90 39.79 16 24 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.23 -7.88 6.52 99.48 0.65 -7.23 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.76 6.41 -2.38 -0.02 0.75 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 1.02 6.34 -2.39 -0.02 1.01 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 2.10 6.20 -2.39 -0.01 2.08 16 35 H 0.05 1.25 7.36 -2.39 -0.02 1.23 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.13 1.55 6.78 -2.39 -0.02 1.53 16 38 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.09 1.83 5.66 -2.39 -0.01 1.81 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.41 12.77 4.95 -92.71 -0.46 12.31 16 43 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 44 H 0.10 3.01 8.14 -2.38 -0.02 2.99 16 45 H 0.39 15.02 5.76 -92.71 -0.53 14.49 16 46 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -71.87 358.91 0.80 -71.07 By element: Atomic # 1 Polarization: 43.86 SS G_CDS: -0.04 Total: 43.82 kcal Atomic # 6 Polarization: 23.76 SS G_CDS: 6.97 Total: 30.73 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -6.34 Total: -124.72 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -1.69 Total: -60.69 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 1.90 Total: 39.79 kcal Total: -71.87 0.80 -71.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358267618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.869 kcal (2) G-P(sol) polarization free energy of solvation -71.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds