Wall clock time and date at job start Tue Mar 31 2020 04:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47465 * 2 1 4 4 O 1.42903 * 109.46830 * 120.00361 * 2 1 3 5 5 C 1.53003 * 109.47001 * 239.99865 * 2 1 3 6 6 C 1.53007 * 109.46985 * 173.11452 * 5 2 1 7 7 H 1.08997 * 109.69997 * 299.74009 * 6 5 2 8 8 C 1.53623 * 109.66345 * 60.33578 * 6 5 2 9 9 C 1.53038 * 109.24179 * 174.54834 * 8 6 5 10 10 C 1.53035 * 109.53888 * 298.51124 * 9 8 6 11 11 C 1.53187 * 109.31454 * 61.36274 * 10 9 8 12 12 N 1.46924 * 108.77830 * 305.36879 * 11 10 9 13 13 C 1.34774 * 120.63068 * 233.58772 * 12 11 10 14 14 O 1.21587 * 119.99960 * 185.35641 * 13 12 11 15 15 N 1.34775 * 119.99945 * 5.34837 * 13 12 11 16 16 C 1.46504 * 120.00084 * 174.92976 * 15 13 12 17 17 C 1.50699 * 109.47394 * 180.02562 * 16 15 13 18 18 O 1.21288 * 119.99860 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00101 * 179.72488 * 17 16 15 20 20 C 1.37095 * 119.99885 * 180.27345 * 19 17 16 21 21 H 1.07995 * 120.00389 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99592 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00241 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99569 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46989 * 90.00583 * 24 22 20 26 26 H 1.48503 * 109.47187 * 210.00249 * 24 22 20 27 27 H 1.48501 * 109.47298 * 330.00190 * 24 22 20 28 28 H 1.09004 * 109.47389 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47346 * 299.99905 * 1 2 3 30 30 H 1.09004 * 109.46677 * 60.00130 * 1 2 3 31 31 H 0.96698 * 114.00368 * 60.00299 * 4 2 1 32 32 H 1.08997 * 109.47093 * 53.11755 * 5 2 1 33 33 H 1.09000 * 109.47085 * 293.11448 * 5 2 1 34 34 H 1.08996 * 109.63559 * 54.55768 * 8 6 5 35 35 H 1.09006 * 109.45675 * 294.43093 * 8 6 5 36 36 H 1.09002 * 109.45710 * 178.48547 * 9 8 6 37 37 H 1.09000 * 109.45024 * 58.52809 * 9 8 6 38 38 H 1.09004 * 109.49584 * 301.41260 * 10 9 8 39 39 H 1.08999 * 109.52258 * 181.33233 * 10 9 8 40 40 H 1.09001 * 109.59137 * 185.57682 * 11 10 9 41 41 H 1.09004 * 109.70343 * 65.22530 * 11 10 9 42 42 H 0.96999 * 120.00283 * 354.93490 * 15 13 12 43 43 H 1.09008 * 109.46743 * 60.00074 * 16 15 13 44 44 H 1.09004 * 109.46995 * 300.00779 * 16 15 13 45 45 H 0.97006 * 120.00135 * 0.27686 * 19 17 16 46 46 H 0.97002 * 119.99948 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2493 6 6 3.5602 -0.5733 -1.3387 7 1 3.8234 0.4825 -1.4030 8 6 4.2143 -1.1964 -0.0962 9 6 5.7358 -1.1655 -0.2581 10 6 6.1374 -1.9943 -1.4802 11 6 5.5052 -1.3852 -2.7356 12 7 4.0544 -1.2775 -2.5298 13 6 3.1933 -1.8098 -3.4194 14 8 1.9976 -1.6307 -3.2902 15 7 3.6575 -2.5405 -4.4524 16 6 2.7189 -3.2113 -5.3554 17 6 3.4877 -3.9557 -6.4165 18 8 4.7002 -3.9289 -6.4180 19 7 2.8279 -4.6560 -7.3603 20 6 3.5274 -5.3378 -8.3222 21 1 4.6071 -5.3140 -8.3236 22 6 2.8472 -6.0603 -9.2949 23 7 1.5335 -6.0897 -9.2929 24 14 3.8004 -6.9899 -10.6052 25 1 4.0794 -8.3688 -10.1297 26 1 2.9972 -7.0496 -11.8528 27 1 5.0822 -6.2903 -10.8748 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7210 -1.5953 1.2329 32 1 1.5796 -0.2835 -2.1349 33 1 1.7807 -1.7783 -1.1898 34 1 3.8811 -2.2283 0.0145 35 1 3.9308 -0.6257 0.7882 36 1 6.2043 -1.5824 0.6335 37 1 6.0655 -0.1354 -0.3935 38 1 5.7861 -3.0188 -1.3565 39 1 7.2227 -1.9916 -1.5815 40 1 5.7059 -2.0265 -3.5938 41 1 5.9234 -0.3945 -2.9140 42 1 4.6130 -2.6223 -4.5979 43 1 2.0745 -2.4689 -5.8265 44 1 2.1088 -3.9145 -4.7885 45 1 1.8581 -4.6777 -7.3589 46 1 1.0586 -6.5944 -9.9717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358295029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:48 Heat of formation + Delta-G solvation = -110.131765 kcal Electronic energy + Delta-G solvation = -27064.789427 eV Core-core repulsion = 23182.700823 eV Total energy + Delta-G solvation = -3882.088603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70960 -38.62104 -37.88761 -37.03247 -34.66068 -33.87884 -32.83825 -32.31390 -31.36041 -30.76004 -27.79432 -26.82019 -24.77333 -24.23374 -22.72271 -21.42140 -21.04780 -19.62303 -19.38253 -18.22498 -17.74521 -16.54730 -16.24972 -15.75766 -15.49526 -15.44279 -14.85132 -14.61587 -14.57753 -14.37298 -14.23922 -14.09475 -13.72281 -13.50223 -13.13819 -12.98744 -12.77751 -12.28915 -12.16829 -11.94446 -11.85642 -11.63688 -11.52916 -11.17921 -11.16758 -11.13136 -11.04687 -10.94269 -10.66389 -10.46558 -10.31996 -9.87381 -9.64086 -8.97155 -8.82367 -8.62624 -8.36178 -8.10331 -6.51895 -3.93864 2.74042 3.11094 3.21537 3.26880 3.38038 3.74965 3.97325 4.13871 4.26454 4.62465 4.69269 4.75812 4.86841 4.89854 4.97372 5.02081 5.14396 5.16936 5.20376 5.36761 5.39903 5.54496 5.57855 5.69956 5.73727 5.78928 5.84990 5.92006 5.93445 5.99217 6.01063 6.07806 6.09556 6.21812 6.32176 6.37672 6.71387 6.84179 7.10283 7.45530 7.50091 7.92159 8.19567 8.44983 8.82387 9.04335 9.39266 9.87191 10.65038 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.002795 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.964336 B =10015.033766 C =11049.162858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.093 3.907 3 H 0.093 0.907 4 O -0.565 6.565 5 C -0.141 4.141 6 C 0.170 3.830 7 H 0.065 0.935 8 C -0.136 4.136 9 C -0.121 4.121 10 C -0.135 4.135 11 C 0.109 3.891 12 N -0.629 5.629 13 C 0.708 3.292 14 O -0.592 6.592 15 N -0.727 5.727 16 C 0.128 3.872 17 C 0.429 3.571 18 O -0.599 6.599 19 N -0.549 5.549 20 C -0.305 4.305 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.895 5.895 24 Si 0.933 3.067 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.269 1.269 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.372 0.628 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.405 0.595 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.396 0.604 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 10.746 18.179 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.034 3.966 3 H 0.110 0.890 4 O -0.371 6.371 5 C -0.178 4.178 6 C 0.067 3.933 7 H 0.082 0.918 8 C -0.174 4.174 9 C -0.158 4.158 10 C -0.174 4.174 11 C -0.014 4.014 12 N -0.367 5.367 13 C 0.409 3.591 14 O -0.472 6.472 15 N -0.387 5.387 16 C 0.000 4.000 17 C 0.214 3.786 18 O -0.485 6.485 19 N -0.184 5.184 20 C -0.434 4.434 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.759 3.241 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.193 1.193 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.220 0.780 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.245 0.755 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.230 0.770 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.352 11.333 18.193 21.563 hybrid contribution 0.053 -1.180 -1.056 1.585 sum 2.405 10.153 17.137 20.063 Atomic orbital electron populations 1.22411 0.96475 1.02562 1.02286 1.22145 0.92954 0.96595 0.84940 0.88955 1.86525 1.76405 1.29213 1.44976 1.22905 0.93854 1.02598 0.98489 1.21146 0.94393 0.94625 0.83177 0.91753 1.22363 0.94298 1.02048 0.98647 1.21550 0.96672 0.99966 0.97634 1.21920 1.00414 1.00135 0.94902 1.21652 0.80209 1.01185 0.98374 1.47321 1.05468 1.59762 1.24099 1.15855 0.84949 0.78625 0.79627 1.90877 1.14090 1.65521 1.76690 1.45107 1.11259 1.53128 1.29166 1.20766 0.91498 0.96585 0.91180 1.19778 0.88358 0.85227 0.85200 1.90484 1.13845 1.67437 1.76780 1.41787 1.09540 1.42485 1.24587 1.19723 0.93353 1.25479 1.04873 0.87710 1.25319 0.95719 0.97822 0.98845 1.69612 1.06411 1.41652 1.35820 0.85820 0.79261 0.79562 0.79425 1.20274 1.20792 1.19325 0.92348 0.92350 0.91534 0.78012 0.87368 0.90803 0.92110 0.88061 0.91954 0.92128 0.91430 0.90906 0.89894 0.91476 0.75519 0.90028 0.90224 0.77030 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.53 37.16 0.35 -1.21 16 2 C 0.09 0.85 3.47 -26.73 -0.09 0.76 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 4 O -0.56 -5.00 9.97 -35.23 -0.35 -5.35 16 5 C -0.14 -1.62 2.97 -26.73 -0.08 -1.70 16 6 C 0.17 1.88 3.03 -67.37 -0.20 1.68 16 7 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 8 C -0.14 -1.29 4.31 -26.39 -0.11 -1.40 16 9 C -0.12 -1.04 5.88 -26.69 -0.16 -1.19 16 10 C -0.14 -1.27 6.08 -26.62 -0.16 -1.43 16 11 C 0.11 1.19 6.43 -3.71 -0.02 1.17 16 12 N -0.63 -8.12 2.97 -170.65 -0.51 -8.62 16 13 C 0.71 11.46 8.15 -86.92 -0.71 10.76 16 14 O -0.59 -10.60 11.89 5.29 0.06 -10.54 16 15 N -0.73 -12.46 5.44 -66.41 -0.36 -12.82 16 16 C 0.13 2.39 6.16 -5.19 -0.03 2.36 16 17 C 0.43 9.85 7.85 -10.99 -0.09 9.76 16 18 O -0.60 -15.31 15.24 5.55 0.08 -15.22 16 19 N -0.55 -13.61 5.29 -10.97 -0.06 -13.66 16 20 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 21 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 23 N -0.89 -23.85 13.05 55.50 0.72 -23.12 16 24 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.37 2.48 9.05 45.56 0.41 2.89 16 32 H 0.11 1.52 6.14 -51.93 -0.32 1.20 16 33 H 0.07 0.98 7.31 -51.93 -0.38 0.60 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.94 5.77 -51.93 -0.30 0.64 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.98 5.56 -51.93 -0.29 0.69 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.40 6.90 4.89 -40.82 -0.20 6.70 16 43 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 44 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.40 9.44 7.90 -40.82 -0.32 9.11 16 46 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -30.55 361.70 -7.93 -38.48 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -6.40 Total: 18.23 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -1.55 Total: 11.71 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.20 Total: -58.23 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.20 Total: -31.12 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.55 -7.93 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358295029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.650 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds