Wall clock time and date at job start Tue Mar 31 2020 04:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47465 * 2 1 4 4 O 1.42903 * 109.46830 * 120.00361 * 2 1 3 5 5 C 1.53003 * 109.47001 * 239.99865 * 2 1 3 6 6 C 1.53007 * 109.46985 * 173.11452 * 5 2 1 7 7 H 1.08997 * 109.69997 * 299.74009 * 6 5 2 8 8 C 1.53623 * 109.66345 * 60.33578 * 6 5 2 9 9 C 1.53038 * 109.24179 * 174.54834 * 8 6 5 10 10 C 1.53035 * 109.53888 * 298.51124 * 9 8 6 11 11 C 1.53187 * 109.31454 * 61.36274 * 10 9 8 12 12 N 1.46924 * 108.77830 * 305.36879 * 11 10 9 13 13 C 1.34774 * 120.63068 * 233.58772 * 12 11 10 14 14 O 1.21587 * 119.99960 * 185.35641 * 13 12 11 15 15 N 1.34775 * 119.99945 * 5.34837 * 13 12 11 16 16 C 1.46504 * 120.00084 * 174.92976 * 15 13 12 17 17 C 1.50699 * 109.47394 * 180.02562 * 16 15 13 18 18 O 1.21288 * 119.99860 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00101 * 179.72488 * 17 16 15 20 20 C 1.37095 * 119.99885 * 180.27345 * 19 17 16 21 21 H 1.07995 * 120.00389 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99592 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00241 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99569 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46989 * 90.00583 * 24 22 20 26 26 H 1.48503 * 109.47187 * 210.00249 * 24 22 20 27 27 H 1.48501 * 109.47298 * 330.00190 * 24 22 20 28 28 H 1.09004 * 109.47389 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47346 * 299.99905 * 1 2 3 30 30 H 1.09004 * 109.46677 * 60.00130 * 1 2 3 31 31 H 0.96698 * 114.00368 * 60.00299 * 4 2 1 32 32 H 1.08997 * 109.47093 * 53.11755 * 5 2 1 33 33 H 1.09000 * 109.47085 * 293.11448 * 5 2 1 34 34 H 1.08996 * 109.63559 * 54.55768 * 8 6 5 35 35 H 1.09006 * 109.45675 * 294.43093 * 8 6 5 36 36 H 1.09002 * 109.45710 * 178.48547 * 9 8 6 37 37 H 1.09000 * 109.45024 * 58.52809 * 9 8 6 38 38 H 1.09004 * 109.49584 * 301.41260 * 10 9 8 39 39 H 1.08999 * 109.52258 * 181.33233 * 10 9 8 40 40 H 1.09001 * 109.59137 * 185.57682 * 11 10 9 41 41 H 1.09004 * 109.70343 * 65.22530 * 11 10 9 42 42 H 0.96999 * 120.00283 * 354.93490 * 15 13 12 43 43 H 1.09008 * 109.46743 * 60.00074 * 16 15 13 44 44 H 1.09004 * 109.46995 * 300.00779 * 16 15 13 45 45 H 0.97006 * 120.00135 * 0.27686 * 19 17 16 46 46 H 0.97002 * 119.99948 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2493 6 6 3.5602 -0.5733 -1.3387 7 1 3.8234 0.4825 -1.4030 8 6 4.2143 -1.1964 -0.0962 9 6 5.7358 -1.1655 -0.2581 10 6 6.1374 -1.9943 -1.4802 11 6 5.5052 -1.3852 -2.7356 12 7 4.0544 -1.2775 -2.5298 13 6 3.1933 -1.8098 -3.4194 14 8 1.9976 -1.6307 -3.2902 15 7 3.6575 -2.5405 -4.4524 16 6 2.7189 -3.2113 -5.3554 17 6 3.4877 -3.9557 -6.4165 18 8 4.7002 -3.9289 -6.4180 19 7 2.8279 -4.6560 -7.3603 20 6 3.5274 -5.3378 -8.3222 21 1 4.6071 -5.3140 -8.3236 22 6 2.8472 -6.0603 -9.2949 23 7 1.5335 -6.0897 -9.2929 24 14 3.8004 -6.9899 -10.6052 25 1 4.0794 -8.3688 -10.1297 26 1 2.9972 -7.0496 -11.8528 27 1 5.0822 -6.2903 -10.8748 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7210 -1.5953 1.2329 32 1 1.5796 -0.2835 -2.1349 33 1 1.7807 -1.7783 -1.1898 34 1 3.8811 -2.2283 0.0145 35 1 3.9308 -0.6257 0.7882 36 1 6.2043 -1.5824 0.6335 37 1 6.0655 -0.1354 -0.3935 38 1 5.7861 -3.0188 -1.3565 39 1 7.2227 -1.9916 -1.5815 40 1 5.7059 -2.0265 -3.5938 41 1 5.9234 -0.3945 -2.9140 42 1 4.6130 -2.6223 -4.5979 43 1 2.0745 -2.4689 -5.8265 44 1 2.1088 -3.9145 -4.7885 45 1 1.8581 -4.6777 -7.3589 46 1 1.0586 -6.5944 -9.9717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358295029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:47 Heat of formation + Delta-G solvation = -132.437482 kcal Electronic energy + Delta-G solvation = -27065.756675 eV Core-core repulsion = 23182.700823 eV Total energy + Delta-G solvation = -3883.055852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84488 -40.28288 -39.01517 -37.95575 -36.30690 -35.52992 -33.77292 -33.46074 -33.19572 -31.53937 -29.25605 -27.84209 -26.43803 -25.33421 -23.61742 -22.30086 -22.03051 -21.31094 -20.58512 -20.05905 -19.04721 -17.58579 -17.47111 -17.08513 -16.85596 -16.64634 -16.30670 -15.98170 -15.79701 -15.51344 -15.43252 -15.20763 -15.01320 -14.58146 -14.31427 -14.05804 -13.77779 -13.58437 -13.54153 -13.44917 -13.05675 -12.91122 -12.66862 -12.46321 -12.37449 -12.14951 -12.10642 -11.98199 -11.82840 -11.75777 -11.57676 -11.44399 -10.69191 -10.55906 -10.19352 -10.09054 -10.05795 -9.42604 -8.51544 -6.01775 1.35896 1.41969 1.53022 1.59306 1.89155 2.12760 2.27552 2.81836 3.14777 3.15746 3.54140 3.75713 3.88154 3.98967 4.07855 4.15153 4.21078 4.25196 4.35199 4.39782 4.41620 4.45949 4.55408 4.58175 4.73939 4.78343 4.95952 4.98716 5.01679 5.10788 5.21758 5.23241 5.30019 5.33091 5.38133 5.40401 5.50884 5.55449 5.76828 5.91945 5.93855 6.47508 6.86997 6.93614 7.02947 7.42053 7.56243 7.93886 8.65417 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.002795 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.964336 B =10015.033766 C =11049.162858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.103 3.897 3 H 0.101 0.899 4 O -0.567 6.567 5 C -0.130 4.130 6 C 0.163 3.837 7 H 0.077 0.923 8 C -0.125 4.125 9 C -0.118 4.118 10 C -0.131 4.131 11 C 0.104 3.896 12 N -0.623 5.623 13 C 0.702 3.298 14 O -0.613 6.613 15 N -0.731 5.731 16 C 0.143 3.857 17 C 0.433 3.567 18 O -0.625 6.625 19 N -0.559 5.559 20 C -0.337 4.337 21 H 0.086 0.914 22 C -0.010 4.010 23 N -0.916 5.916 24 Si 0.997 3.003 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.382 0.618 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.405 0.595 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.399 0.601 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.039 11.342 19.241 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.044 3.956 3 H 0.119 0.881 4 O -0.375 6.375 5 C -0.168 4.168 6 C 0.061 3.939 7 H 0.095 0.905 8 C -0.163 4.163 9 C -0.155 4.155 10 C -0.169 4.169 11 C -0.019 4.019 12 N -0.360 5.360 13 C 0.404 3.596 14 O -0.494 6.494 15 N -0.391 5.391 16 C 0.014 3.986 17 C 0.220 3.780 18 O -0.513 6.513 19 N -0.194 5.194 20 C -0.466 4.466 21 H 0.104 0.896 22 C -0.211 4.211 23 N -0.556 5.556 24 Si 0.820 3.180 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.194 1.194 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.231 0.769 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.245 0.755 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.233 0.767 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.106 11.943 19.295 22.904 hybrid contribution -0.177 -1.324 -1.318 1.877 sum 2.929 10.619 17.977 21.083 Atomic orbital electron populations 1.22386 0.96142 1.02416 1.02548 1.21999 0.93122 0.96583 0.83881 0.88085 1.86497 1.76493 1.30077 1.44406 1.22679 0.94211 1.01177 0.98696 1.21383 0.94188 0.95222 0.83100 0.90529 1.22264 0.95006 1.01199 0.97802 1.21553 0.95746 1.00577 0.97628 1.21897 1.01350 0.99238 0.94418 1.21842 0.79043 1.02138 0.98871 1.47440 1.06050 1.58832 1.23710 1.16015 0.85114 0.78683 0.79773 1.90886 1.15108 1.66264 1.77177 1.45088 1.10945 1.53583 1.29481 1.20548 0.91168 0.96573 0.90270 1.20431 0.88210 0.84217 0.85121 1.90459 1.15285 1.68107 1.77459 1.41830 1.09621 1.43036 1.24920 1.19732 0.92864 1.27429 1.06622 0.89604 1.26125 0.96646 0.98026 1.00289 1.69678 1.07429 1.41963 1.36532 0.84875 0.77903 0.78254 0.76994 1.19532 1.19629 1.19442 0.92739 0.91305 0.92001 0.76895 0.90005 0.93013 0.93291 0.87296 0.90703 0.90927 0.92941 0.89042 0.91172 0.89634 0.75479 0.89176 0.89245 0.76710 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 9.53 71.98 0.69 -2.23 16 2 C 0.10 1.77 3.47 30.59 0.11 1.87 16 3 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 4 O -0.57 -9.02 9.97 -148.98 -1.48 -10.50 16 5 C -0.13 -2.95 2.97 30.60 0.09 -2.86 16 6 C 0.16 3.42 3.03 45.12 0.14 3.55 16 7 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 8 C -0.12 -2.13 4.31 30.82 0.13 -2.00 16 9 C -0.12 -1.70 5.88 30.62 0.18 -1.52 16 10 C -0.13 -2.20 6.08 30.67 0.19 -2.02 16 11 C 0.10 2.13 6.43 86.36 0.56 2.69 16 12 N -0.62 -15.66 2.97 -812.09 -2.41 -18.06 16 13 C 0.70 22.78 8.15 179.06 1.46 24.24 16 14 O -0.61 -22.21 11.89 -3.99 -0.05 -22.26 16 15 N -0.73 -25.18 5.44 -482.28 -2.62 -27.81 16 16 C 0.14 5.36 6.16 85.63 0.53 5.89 16 17 C 0.43 20.22 7.85 87.66 0.69 20.91 16 18 O -0.62 -32.55 15.24 -3.05 -0.05 -32.59 16 19 N -0.56 -28.22 5.29 -307.00 -1.62 -29.84 16 20 C -0.34 -18.62 9.68 84.04 0.81 -17.81 16 21 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 22 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 23 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 24 Si 1.00 41.72 29.55 68.60 2.03 43.75 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.38 4.55 9.05 -74.06 -0.67 3.88 16 32 H 0.08 2.33 6.14 -2.39 -0.01 2.31 16 33 H 0.05 1.40 7.31 -2.39 -0.02 1.38 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.75 5.77 -2.38 -0.01 1.74 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.64 5.56 -2.39 -0.01 1.62 16 41 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.41 13.95 4.89 -92.71 -0.45 13.50 16 43 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 44 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 45 H 0.40 19.37 7.90 -92.70 -0.73 18.64 16 46 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -65.30 361.70 -0.73 -66.03 By element: Atomic # 1 Polarization: 49.90 SS G_CDS: -0.84 Total: 49.06 kcal Atomic # 6 Polarization: 24.62 SS G_CDS: 6.03 Total: 30.65 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -6.37 Total: -124.14 kcal Atomic # 8 Polarization: -63.77 SS G_CDS: -1.58 Total: -65.35 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -65.30 -0.73 -66.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358295029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.409 kcal (2) G-P(sol) polarization free energy of solvation -65.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds