Wall clock time and date at job start Tue Mar 31 2020 04:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47237 * 2 1 4 4 C 1.52997 * 109.47320 * 185.16342 * 3 2 1 5 5 C 1.53005 * 110.38987 * 302.52388 * 4 3 2 6 6 O 1.42897 * 109.47115 * 302.14816 * 5 4 3 7 7 C 1.54282 * 110.34042 * 64.75157 * 4 3 2 8 8 C 1.54793 * 104.92225 * 118.68101 * 7 4 3 9 9 N 1.48149 * 104.41297 * 24.16242 * 8 7 4 10 10 C 1.34786 * 127.83338 * 140.37395 * 9 8 7 11 11 O 1.21585 * 119.99556 * 179.68475 * 10 9 8 12 12 N 1.34775 * 120.00158 * 359.67645 * 10 9 8 13 13 C 1.46496 * 120.00176 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47163 * 180.02562 * 13 12 10 15 15 O 1.21287 * 120.00056 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00001 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00414 * 180.27532 * 16 14 13 18 18 H 1.08000 * 119.99594 * 359.72021 * 17 16 14 19 19 C 1.38946 * 120.00371 * 179.72198 * 17 16 14 20 20 N 1.31414 * 120.00181 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00237 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46927 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46973 * 119.99862 * 21 19 17 24 24 H 1.48497 * 109.47315 * 240.00283 * 21 19 17 25 25 C 1.48141 * 104.32852 * 320.10996 * 9 8 7 26 26 H 1.09001 * 109.47245 * 59.99793 * 1 2 3 27 27 H 1.09003 * 109.47203 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47465 * 300.00238 * 1 2 3 29 29 H 1.08993 * 109.47138 * 239.99585 * 2 1 3 30 30 H 1.09006 * 109.46906 * 119.99575 * 2 1 3 31 31 H 1.09007 * 109.47030 * 65.16522 * 3 2 1 32 32 H 1.08994 * 109.47047 * 305.16967 * 3 2 1 33 33 H 1.09002 * 109.46984 * 62.15168 * 5 4 3 34 34 H 1.08999 * 109.47048 * 182.14652 * 5 4 3 35 35 H 0.96696 * 114.00464 * 179.97438 * 6 5 4 36 36 H 1.09004 * 110.34498 * 237.74411 * 7 4 3 37 37 H 1.09001 * 110.34755 * 359.89452 * 7 4 3 38 38 H 1.09007 * 110.54330 * 265.42809 * 8 7 4 39 39 H 1.08997 * 110.46911 * 142.86241 * 8 7 4 40 40 H 0.97005 * 119.99721 * 0.02562 * 12 10 9 41 41 H 1.08999 * 109.46850 * 60.00052 * 13 12 10 42 42 H 1.09006 * 109.47108 * 300.00335 * 13 12 10 43 43 H 0.97008 * 119.99712 * 359.97438 * 16 14 13 44 44 H 0.96995 * 120.00649 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.40883 * 158.62927 * 25 9 8 46 46 H 1.08998 * 110.40799 * 281.06628 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4445 -0.1298 5 6 4.1972 0.6381 1.0062 6 8 3.7956 1.1886 2.2622 7 6 3.9870 0.8676 -1.4969 8 6 4.7401 2.0222 -2.2011 9 7 5.2233 2.8777 -1.0923 10 6 6.4116 3.5056 -0.9900 11 8 6.6592 4.1823 -0.0107 12 7 7.3254 3.3831 -1.9731 13 6 8.6171 4.0651 -1.8616 14 6 9.4488 3.7684 -3.0828 15 8 9.0063 3.0570 -3.9597 16 7 10.6848 4.2929 -3.2000 17 6 11.4393 4.0277 -4.3135 18 1 11.0450 3.3948 -5.0947 19 6 12.7113 4.5731 -4.4370 20 7 13.1913 5.3428 -3.4862 21 14 13.7396 4.2112 -5.9539 22 1 12.9768 3.3245 -6.8689 23 1 14.0591 5.4832 -6.6504 24 1 14.9999 3.5385 -5.5487 25 6 4.1018 2.8918 -0.1246 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7542 1.9289 0.9327 32 1 1.6031 1.9823 -0.8400 33 1 3.8686 -0.3992 0.9423 34 1 5.2831 0.6810 0.9211 35 1 4.1600 0.7259 3.0291 36 1 4.6454 0.0098 -1.3592 37 1 3.1086 0.5811 -2.0753 38 1 4.0637 2.5826 -2.8466 39 1 5.5810 1.6341 -2.7760 40 1 7.1277 2.8433 -2.7545 41 1 9.1386 3.7122 -0.9719 42 1 8.4550 5.1403 -1.7852 43 1 11.0388 4.8617 -2.4984 44 1 14.0794 5.7233 -3.5722 45 1 4.4604 3.1605 0.8690 46 1 3.3271 3.5859 -0.4507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359569949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:56 Heat of formation + Delta-G solvation = -124.606826 kcal Electronic energy + Delta-G solvation = -26399.361814 eV Core-core repulsion = 22516.645525 eV Total energy + Delta-G solvation = -3882.716289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49832 -38.99675 -38.02337 -36.33882 -34.95672 -34.40971 -33.62131 -31.73975 -31.33776 -29.56185 -27.92333 -26.46404 -25.82840 -24.30168 -23.19486 -21.95330 -19.76686 -19.58576 -19.13086 -18.28279 -17.82329 -17.29979 -16.45054 -15.91530 -15.73222 -15.41903 -15.19275 -14.78949 -14.48593 -14.33374 -14.21267 -13.87241 -13.66690 -13.37912 -13.24761 -13.15128 -12.65415 -12.33298 -12.30007 -12.11188 -11.85717 -11.84532 -11.62897 -11.56420 -11.30314 -11.14172 -10.92031 -10.70857 -10.60525 -10.40881 -10.32332 -10.12124 -9.95803 -9.64382 -8.93149 -8.61924 -8.44650 -8.09429 -6.50915 -3.92938 2.68713 3.10349 3.22461 3.29154 3.39556 3.75640 3.87767 4.03458 4.16620 4.34744 4.40409 4.54052 4.77189 4.85158 4.88555 4.91271 5.02635 5.10531 5.16279 5.17825 5.29437 5.40539 5.48110 5.49986 5.52099 5.61970 5.68173 5.70894 5.78588 5.82403 5.90966 5.94337 6.02331 6.03854 6.09412 6.13517 6.27629 6.78394 7.24345 7.38959 7.46611 7.93207 8.21836 8.45844 8.82686 9.05220 9.40261 9.88062 10.66069 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.031839 B = 0.002305 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.209563 B =12146.228696 C =12589.705776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.100 4.100 4 C -0.070 4.070 5 C 0.090 3.910 6 O -0.568 6.568 7 C -0.125 4.125 8 C 0.099 3.901 9 N -0.644 5.644 10 C 0.728 3.272 11 O -0.594 6.594 12 N -0.723 5.723 13 C 0.128 3.872 14 C 0.430 3.570 15 O -0.598 6.598 16 N -0.550 5.550 17 C -0.304 4.304 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.894 5.894 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.137 3.863 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.378 0.622 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.406 0.594 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.396 0.604 44 H 0.274 0.726 45 H 0.090 0.910 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.453 -10.126 7.937 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.138 4.138 4 C -0.071 4.071 5 C 0.012 3.988 6 O -0.374 6.374 7 C -0.163 4.163 8 C -0.024 4.024 9 N -0.383 5.383 10 C 0.430 3.570 11 O -0.473 6.473 12 N -0.381 5.381 13 C 0.000 4.000 14 C 0.215 3.785 15 O -0.485 6.485 16 N -0.184 5.184 17 C -0.433 4.433 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.535 5.535 21 Si 0.759 3.241 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.014 3.986 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.225 0.775 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.244 0.756 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.230 0.770 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.517 -9.503 7.681 24.745 hybrid contribution 1.109 -0.451 -0.371 1.253 sum -20.408 -9.954 7.310 23.854 Atomic orbital electron populations 1.21766 0.95947 1.01416 1.01803 1.21588 0.95720 0.96942 1.01978 1.21550 0.92422 0.97117 1.02665 1.21540 0.96101 0.95639 0.93870 1.22199 0.97646 0.95421 0.83488 1.86448 1.75455 1.60014 1.15440 1.22709 1.00725 0.98041 0.94852 1.22437 0.98732 0.91253 0.90005 1.47977 1.14627 1.52833 1.22833 1.15264 0.78819 0.79795 0.83159 1.90910 1.78696 1.45203 1.32466 1.44783 1.15551 1.54701 1.23083 1.20791 0.83255 0.97775 0.98170 1.19755 0.83817 0.86107 0.88795 1.90482 1.72227 1.42612 1.43176 1.41798 1.12561 1.43523 1.20561 1.19771 0.96324 1.29084 0.98152 0.87644 1.25332 0.97404 0.96161 0.98915 1.69622 1.18632 1.32095 1.33107 0.85754 0.79284 0.78288 0.80729 1.19156 1.20625 1.20628 1.22154 0.87269 0.94775 0.94415 0.92798 0.92972 0.92766 0.91966 0.91918 0.90805 0.91728 0.93376 0.93538 0.77490 0.90678 0.89610 0.90956 0.90136 0.75623 0.90048 0.89994 0.77001 0.91645 0.89123 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.79 5.24 -26.73 -0.14 -0.93 16 3 C -0.10 -0.74 3.82 -26.73 -0.10 -0.84 16 4 C -0.07 -0.62 0.56 -153.11 -0.09 -0.70 16 5 C 0.09 0.79 5.22 37.16 0.19 0.98 16 6 O -0.57 -5.11 12.43 -35.23 -0.44 -5.55 16 7 C -0.12 -0.99 5.73 -25.12 -0.14 -1.13 16 8 C 0.10 1.02 6.94 -2.19 -0.02 1.00 16 9 N -0.64 -8.81 3.31 -174.76 -0.58 -9.39 16 10 C 0.73 12.88 8.57 -86.91 -0.74 12.14 16 11 O -0.59 -12.49 16.61 5.29 0.09 -12.40 16 12 N -0.72 -12.94 5.50 -66.41 -0.37 -13.30 16 13 C 0.13 2.48 6.15 -5.20 -0.03 2.45 16 14 C 0.43 10.01 7.85 -10.99 -0.09 9.92 16 15 O -0.60 -15.42 15.24 5.55 0.08 -15.33 16 16 N -0.55 -13.77 5.29 -10.97 -0.06 -13.83 16 17 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 18 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 20 N -0.89 -24.01 13.05 55.50 0.72 -23.29 16 21 Si 0.93 20.59 29.55 -169.99 -5.02 15.56 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.14 1.62 6.06 -2.41 -0.01 1.61 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.37 6.69 -51.93 -0.35 0.02 16 30 H 0.06 0.42 6.81 -51.93 -0.35 0.07 16 31 H 0.07 0.63 7.77 -51.93 -0.40 0.23 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.34 6.72 -51.93 -0.35 -0.01 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.38 1.94 9.12 45.56 0.42 2.36 16 36 H 0.07 0.58 7.71 -51.93 -0.40 0.18 16 37 H 0.09 0.53 6.75 -51.93 -0.35 0.18 16 38 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 39 H 0.08 0.85 6.86 -51.93 -0.36 0.50 16 40 H 0.41 7.07 5.83 -40.82 -0.24 6.83 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.40 9.56 7.90 -40.82 -0.32 9.24 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.09 1.28 7.17 -51.93 -0.37 0.91 16 46 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -33.15 371.34 -7.39 -40.55 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -6.38 Total: 15.30 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: -1.04 Total: 16.07 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.28 Total: -59.80 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.27 Total: -33.28 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.15 -7.39 -40.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359569949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.059 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds