Wall clock time and date at job start Tue Mar 31 2020 04:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47237 * 2 1 4 4 C 1.52997 * 109.47320 * 185.16342 * 3 2 1 5 5 C 1.53005 * 110.38987 * 302.52388 * 4 3 2 6 6 O 1.42897 * 109.47115 * 302.14816 * 5 4 3 7 7 C 1.54282 * 110.34042 * 64.75157 * 4 3 2 8 8 C 1.54793 * 104.92225 * 118.68101 * 7 4 3 9 9 N 1.48149 * 104.41297 * 24.16242 * 8 7 4 10 10 C 1.34786 * 127.83338 * 140.37395 * 9 8 7 11 11 O 1.21585 * 119.99556 * 179.68475 * 10 9 8 12 12 N 1.34775 * 120.00158 * 359.67645 * 10 9 8 13 13 C 1.46496 * 120.00176 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47163 * 180.02562 * 13 12 10 15 15 O 1.21287 * 120.00056 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00001 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00414 * 180.27532 * 16 14 13 18 18 H 1.08000 * 119.99594 * 359.72021 * 17 16 14 19 19 C 1.38946 * 120.00371 * 179.72198 * 17 16 14 20 20 N 1.31414 * 120.00181 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00237 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46927 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46973 * 119.99862 * 21 19 17 24 24 H 1.48497 * 109.47315 * 240.00283 * 21 19 17 25 25 C 1.48141 * 104.32852 * 320.10996 * 9 8 7 26 26 H 1.09001 * 109.47245 * 59.99793 * 1 2 3 27 27 H 1.09003 * 109.47203 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47465 * 300.00238 * 1 2 3 29 29 H 1.08993 * 109.47138 * 239.99585 * 2 1 3 30 30 H 1.09006 * 109.46906 * 119.99575 * 2 1 3 31 31 H 1.09007 * 109.47030 * 65.16522 * 3 2 1 32 32 H 1.08994 * 109.47047 * 305.16967 * 3 2 1 33 33 H 1.09002 * 109.46984 * 62.15168 * 5 4 3 34 34 H 1.08999 * 109.47048 * 182.14652 * 5 4 3 35 35 H 0.96696 * 114.00464 * 179.97438 * 6 5 4 36 36 H 1.09004 * 110.34498 * 237.74411 * 7 4 3 37 37 H 1.09001 * 110.34755 * 359.89452 * 7 4 3 38 38 H 1.09007 * 110.54330 * 265.42809 * 8 7 4 39 39 H 1.08997 * 110.46911 * 142.86241 * 8 7 4 40 40 H 0.97005 * 119.99721 * 0.02562 * 12 10 9 41 41 H 1.08999 * 109.46850 * 60.00052 * 13 12 10 42 42 H 1.09006 * 109.47108 * 300.00335 * 13 12 10 43 43 H 0.97008 * 119.99712 * 359.97438 * 16 14 13 44 44 H 0.96995 * 120.00649 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.40883 * 158.62927 * 25 9 8 46 46 H 1.08998 * 110.40799 * 281.06628 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4445 -0.1298 5 6 4.1972 0.6381 1.0062 6 8 3.7956 1.1886 2.2622 7 6 3.9870 0.8676 -1.4969 8 6 4.7401 2.0222 -2.2011 9 7 5.2233 2.8777 -1.0923 10 6 6.4116 3.5056 -0.9900 11 8 6.6592 4.1823 -0.0107 12 7 7.3254 3.3831 -1.9731 13 6 8.6171 4.0651 -1.8616 14 6 9.4488 3.7684 -3.0828 15 8 9.0063 3.0570 -3.9597 16 7 10.6848 4.2929 -3.2000 17 6 11.4393 4.0277 -4.3135 18 1 11.0450 3.3948 -5.0947 19 6 12.7113 4.5731 -4.4370 20 7 13.1913 5.3428 -3.4862 21 14 13.7396 4.2112 -5.9539 22 1 12.9768 3.3245 -6.8689 23 1 14.0591 5.4832 -6.6504 24 1 14.9999 3.5385 -5.5487 25 6 4.1018 2.8918 -0.1246 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7542 1.9289 0.9327 32 1 1.6031 1.9823 -0.8400 33 1 3.8686 -0.3992 0.9423 34 1 5.2831 0.6810 0.9211 35 1 4.1600 0.7259 3.0291 36 1 4.6454 0.0098 -1.3592 37 1 3.1086 0.5811 -2.0753 38 1 4.0637 2.5826 -2.8466 39 1 5.5810 1.6341 -2.7760 40 1 7.1277 2.8433 -2.7545 41 1 9.1386 3.7122 -0.9719 42 1 8.4550 5.1403 -1.7852 43 1 11.0388 4.8617 -2.4984 44 1 14.0794 5.7233 -3.5722 45 1 4.4604 3.1605 0.8690 46 1 3.3271 3.5859 -0.4507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359569949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:56 Heat of formation + Delta-G solvation = -150.298108 kcal Electronic energy + Delta-G solvation = -26400.475872 eV Core-core repulsion = 22516.645525 eV Total energy + Delta-G solvation = -3883.830347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.59506 -40.41858 -39.57209 -37.16779 -36.26117 -35.67774 -35.28007 -33.39301 -32.52615 -30.37641 -29.43424 -27.13644 -27.07181 -25.93642 -24.09376 -22.57393 -21.39979 -21.05434 -20.12871 -19.93248 -19.12443 -18.08648 -17.54739 -17.37908 -17.06894 -16.60078 -16.52466 -16.24731 -15.92800 -15.60564 -15.29718 -15.09221 -14.95695 -14.38228 -14.15390 -14.00748 -13.84229 -13.60059 -13.55597 -13.28028 -13.04570 -12.95346 -12.91333 -12.58202 -12.45130 -12.17331 -12.11083 -11.92406 -11.58847 -11.55636 -11.42229 -11.32826 -11.20594 -10.79720 -10.57555 -10.37270 -10.10738 -9.61549 -8.51615 -6.02021 1.34751 1.39941 1.45303 1.57922 1.87517 2.04498 2.27469 2.85985 3.15234 3.15653 3.22814 3.54067 3.63119 3.92202 4.14952 4.17222 4.20587 4.31446 4.36971 4.40436 4.42114 4.43758 4.52454 4.63533 4.67126 4.71466 4.84594 4.87282 4.95399 5.02699 5.07385 5.09958 5.22722 5.27424 5.30303 5.38214 5.46909 5.50700 5.58504 5.91222 5.98833 6.46668 6.88067 6.89712 7.02453 7.39294 7.47445 7.92603 8.65548 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.031839 B = 0.002305 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.209563 B =12146.228696 C =12589.705776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.064 4.064 5 C 0.091 3.909 6 O -0.584 6.584 7 C -0.116 4.116 8 C 0.092 3.908 9 N -0.642 5.642 10 C 0.724 3.276 11 O -0.633 6.633 12 N -0.722 5.722 13 C 0.141 3.859 14 C 0.435 3.565 15 O -0.623 6.623 16 N -0.559 5.559 17 C -0.336 4.336 18 H 0.087 0.913 19 C -0.012 4.012 20 N -0.916 5.916 21 Si 0.999 3.001 22 H -0.269 1.269 23 H -0.271 1.271 24 H -0.271 1.271 25 C 0.134 3.866 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.024 0.976 35 H 0.393 0.607 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.409 0.591 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.399 0.601 44 H 0.280 0.720 45 H 0.062 0.938 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.582 -11.302 7.181 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.131 4.131 4 C -0.065 4.065 5 C 0.014 3.986 6 O -0.392 6.392 7 C -0.154 4.154 8 C -0.030 4.030 9 N -0.379 5.379 10 C 0.426 3.574 11 O -0.515 6.515 12 N -0.380 5.380 13 C 0.013 3.987 14 C 0.222 3.778 15 O -0.511 6.511 16 N -0.194 5.194 17 C -0.465 4.465 18 H 0.105 0.895 19 C -0.213 4.213 20 N -0.556 5.556 21 Si 0.822 3.178 22 H -0.193 1.193 23 H -0.197 1.197 24 H -0.196 1.196 25 C 0.011 3.989 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.243 0.757 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.247 0.753 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.687 -10.706 6.940 26.029 hybrid contribution 1.380 -0.090 -0.076 1.385 sum -21.308 -10.796 6.863 24.853 Atomic orbital electron populations 1.21761 0.95562 1.01814 1.01782 1.21561 0.96011 0.95941 1.02346 1.21495 0.91093 0.98080 1.02394 1.21529 0.97012 0.93438 0.94549 1.22201 0.96342 0.96568 0.83527 1.86416 1.75673 1.60873 1.16216 1.22717 1.01543 0.96998 0.94107 1.22734 0.99117 0.91745 0.89387 1.48035 1.13593 1.52013 1.24284 1.15373 0.79733 0.79870 0.82454 1.90875 1.79775 1.47079 1.33817 1.44683 1.15170 1.54784 1.23396 1.20595 0.83461 0.98458 0.96198 1.20327 0.83405 0.84725 0.89347 1.90457 1.72703 1.43443 1.44481 1.41842 1.13136 1.44077 1.20359 1.19778 0.97528 1.30316 0.98857 0.89470 1.26165 0.97910 0.95496 1.01726 1.69689 1.19197 1.32299 1.34449 0.84785 0.77603 0.78328 0.77092 1.19332 1.19671 1.19632 1.22312 0.86673 0.97350 0.92585 0.92386 0.92386 0.93274 0.90865 0.92247 0.92143 0.90777 0.91166 0.95727 0.75743 0.90175 0.86846 0.89208 0.90554 0.75279 0.89173 0.89165 0.76708 0.91063 0.91970 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.21 5.24 30.59 0.16 -1.05 16 3 C -0.09 -1.18 3.82 30.59 0.12 -1.06 16 4 C -0.06 -1.02 0.56 -51.27 -0.03 -1.05 16 5 C 0.09 1.50 5.22 71.98 0.38 1.87 16 6 O -0.58 -10.18 12.43 -148.98 -1.85 -12.03 16 7 C -0.12 -1.52 5.73 31.64 0.18 -1.34 16 8 C 0.09 1.72 6.94 86.67 0.60 2.33 16 9 N -0.64 -17.24 3.31 -825.09 -2.73 -19.97 16 10 C 0.72 25.76 8.57 179.05 1.53 27.30 16 11 O -0.63 -27.14 16.61 -3.98 -0.07 -27.21 16 12 N -0.72 -25.83 5.50 -482.30 -2.65 -28.48 16 13 C 0.14 5.48 6.15 85.63 0.53 6.00 16 14 C 0.44 20.47 7.85 87.66 0.69 21.16 16 15 O -0.62 -32.40 15.24 -3.05 -0.05 -32.45 16 16 N -0.56 -28.42 5.29 -307.00 -1.62 -30.04 16 17 C -0.34 -18.56 9.68 84.04 0.81 -17.74 16 18 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -48.97 13.05 21.66 0.28 -48.68 16 21 Si 1.00 41.80 29.55 68.60 2.03 43.82 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 C 0.13 3.09 6.06 86.54 0.52 3.61 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.59 6.69 -2.39 -0.02 0.57 16 30 H 0.06 0.65 6.81 -2.38 -0.02 0.63 16 31 H 0.06 0.95 7.77 -2.38 -0.02 0.93 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.85 6.72 -2.39 -0.02 0.83 16 34 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.39 3.82 9.12 -74.06 -0.68 3.14 16 36 H 0.08 1.02 7.71 -2.38 -0.02 1.00 16 37 H 0.11 0.93 6.75 -2.39 -0.02 0.91 16 38 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.08 1.51 6.86 -2.39 -0.02 1.50 16 40 H 0.41 14.16 5.83 -92.70 -0.54 13.62 16 41 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 42 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 43 H 0.40 19.56 7.90 -92.70 -0.73 18.83 16 44 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 45 H 0.06 1.81 7.17 -2.39 -0.02 1.79 16 46 H 0.08 1.62 7.86 -2.39 -0.02 1.60 16 Total: -1.00 -71.55 371.34 -0.92 -72.47 By element: Atomic # 1 Polarization: 44.36 SS G_CDS: -0.93 Total: 43.43 kcal Atomic # 6 Polarization: 32.47 SS G_CDS: 6.68 Total: 39.15 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -6.73 Total: -127.18 kcal Atomic # 8 Polarization: -69.73 SS G_CDS: -1.96 Total: -71.70 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -71.55 -0.92 -72.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359569949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.827 kcal (2) G-P(sol) polarization free energy of solvation -71.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds