Wall clock time and date at job start Tue Mar 31 2020 04:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47392 * 2 1 4 4 C 1.52995 * 109.47224 * 184.49222 * 3 2 1 5 5 C 1.52995 * 110.30785 * 59.04065 * 4 3 2 6 6 O 1.42902 * 109.47355 * 53.24783 * 5 4 3 7 7 C 1.54282 * 110.34381 * 296.86152 * 4 3 2 8 8 C 1.54389 * 104.96449 * 241.02378 * 7 4 3 9 9 N 1.48146 * 104.61602 * 336.13688 * 8 7 4 10 10 C 1.34775 * 127.83838 * 219.58881 * 9 8 7 11 11 O 1.21582 * 120.00019 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99651 * 0.02562 * 10 9 8 13 13 C 1.46505 * 119.99847 * 180.27762 * 12 10 9 14 14 C 1.50699 * 109.47314 * 179.72580 * 13 12 10 15 15 O 1.21287 * 119.99599 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99915 * 180.02562 * 14 13 12 17 17 C 1.37103 * 119.99677 * 180.02562 * 16 14 13 18 18 H 1.07992 * 120.00228 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99511 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00366 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99614 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47428 * 59.99620 * 21 19 17 23 23 H 1.48502 * 109.46848 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46969 * 299.99434 * 21 19 17 25 25 C 1.48144 * 104.32523 * 39.84153 * 9 8 7 26 26 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47141 * 300.00084 * 1 2 3 28 28 H 1.08998 * 109.46486 * 60.00217 * 1 2 3 29 29 H 1.09002 * 109.47623 * 239.99788 * 2 1 3 30 30 H 1.09003 * 109.46945 * 119.99659 * 2 1 3 31 31 H 1.09006 * 109.46617 * 64.49070 * 3 2 1 32 32 H 1.08997 * 109.46711 * 304.49621 * 3 2 1 33 33 H 1.08997 * 109.47662 * 173.25073 * 5 4 3 34 34 H 1.09008 * 109.47077 * 293.24950 * 5 4 3 35 35 H 0.96697 * 114.00399 * 180.02562 * 6 5 4 36 36 H 1.09005 * 110.34342 * 122.15486 * 7 4 3 37 37 H 1.09000 * 110.43256 * 359.94332 * 7 4 3 38 38 H 1.08998 * 110.40955 * 217.35098 * 8 7 4 39 39 H 1.09003 * 110.50460 * 94.96725 * 8 7 4 40 40 H 0.96991 * 120.00713 * 0.02562 * 12 10 9 41 41 H 1.08998 * 109.47279 * 299.73060 * 13 12 10 42 42 H 1.09009 * 109.46810 * 59.72594 * 13 12 10 43 43 H 0.97002 * 120.00395 * 359.97438 * 16 14 13 44 44 H 0.96999 * 120.00026 * 180.02562 * 20 19 17 45 45 H 1.08999 * 110.40722 * 78.94114 * 25 9 8 46 46 H 1.09001 * 110.40701 * 201.37398 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5659 1.4439 -0.1130 5 6 4.0038 0.7387 -1.3981 6 8 3.3283 1.3206 -2.5148 7 6 4.1954 0.7573 1.1169 8 6 5.0620 1.8481 1.7824 9 7 5.3680 2.8007 0.6898 10 6 6.5299 3.4410 0.4525 11 8 6.6242 4.1989 -0.4935 12 7 7.5873 3.2412 1.2640 13 6 8.8486 3.9420 1.0096 14 6 9.8600 3.5519 2.0565 15 8 9.5572 2.7656 2.9289 16 7 11.1008 4.0768 2.0233 17 6 12.0211 3.7215 2.9754 18 1 11.7516 3.0214 3.7522 19 6 13.3002 4.2632 2.9414 20 7 13.6281 5.1155 1.9965 21 14 14.5540 3.7796 4.2391 22 1 14.7835 2.3135 4.1837 23 1 15.8321 4.4904 3.9816 24 1 14.0431 4.1502 5.5833 25 6 4.1052 2.8945 -0.0791 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8935 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7439 1.9325 0.9276 32 1 1.6125 1.9790 -0.8470 33 1 5.0804 0.8514 -1.5257 34 1 3.7545 -0.3206 -1.3344 35 1 3.5579 0.9215 -3.3651 36 1 4.8167 -0.0825 0.8054 37 1 3.4189 0.4193 1.8030 38 1 5.9809 1.4150 2.1775 39 1 4.5055 2.3464 2.5762 40 1 7.5123 2.6364 2.0184 41 1 9.2232 3.6693 0.0230 42 1 8.6807 5.0183 1.0498 43 1 11.3431 4.7055 1.3253 44 1 14.5211 5.4933 1.9726 45 1 3.3998 3.5531 0.4275 46 1 4.3015 3.2517 -1.0901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359569951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:58 Heat of formation + Delta-G solvation = -124.224795 kcal Electronic energy + Delta-G solvation = -26393.257911 eV Core-core repulsion = 22510.558188 eV Total energy + Delta-G solvation = -3882.699723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49733 -38.99561 -38.02452 -36.35357 -34.93166 -34.41083 -33.62241 -31.73718 -31.33799 -29.58486 -27.92044 -26.48658 -25.81054 -24.29065 -23.18140 -21.95382 -19.77001 -19.58420 -19.13203 -18.27590 -17.81778 -17.31470 -16.44040 -15.92030 -15.79798 -15.41810 -15.19074 -14.76016 -14.44125 -14.33715 -14.21652 -13.87549 -13.65586 -13.37554 -13.25866 -13.16895 -12.67308 -12.33902 -12.25379 -12.11289 -11.86583 -11.85850 -11.62360 -11.55559 -11.29633 -11.10180 -10.91395 -10.71211 -10.57274 -10.50607 -10.31101 -10.12649 -9.96467 -9.62172 -8.93623 -8.61869 -8.45090 -8.09370 -6.50611 -3.92770 2.68191 3.13934 3.21662 3.25504 3.39102 3.75800 3.87638 4.03073 4.15905 4.35960 4.39338 4.54758 4.77443 4.85173 4.89065 4.91334 5.03977 5.10506 5.17933 5.18932 5.28272 5.41238 5.47074 5.50340 5.51849 5.64121 5.67754 5.72415 5.78194 5.82629 5.90783 5.94332 6.02257 6.04684 6.09422 6.15010 6.27215 6.78058 7.23865 7.38446 7.46316 7.92871 8.21374 8.46020 8.82152 9.05111 9.40239 9.88173 10.66185 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.032468 B = 0.002295 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.176517 B =12198.871265 C =12626.918167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.099 4.099 4 C -0.070 4.070 5 C 0.090 3.910 6 O -0.568 6.568 7 C -0.125 4.125 8 C 0.099 3.901 9 N -0.644 5.644 10 C 0.728 3.272 11 O -0.594 6.594 12 N -0.723 5.723 13 C 0.128 3.872 14 C 0.429 3.571 15 O -0.599 6.599 16 N -0.549 5.549 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.894 5.894 21 Si 0.934 3.066 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.137 3.863 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.378 0.622 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.406 0.594 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.396 0.604 44 H 0.275 0.725 45 H 0.068 0.932 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.407 -9.497 -5.333 24.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.137 4.137 4 C -0.071 4.071 5 C 0.013 3.987 6 O -0.373 6.373 7 C -0.163 4.163 8 C -0.024 4.024 9 N -0.383 5.383 10 C 0.430 3.570 11 O -0.473 6.473 12 N -0.381 5.381 13 C 0.000 4.000 14 C 0.215 3.785 15 O -0.485 6.485 16 N -0.184 5.184 17 C -0.435 4.435 18 H 0.122 0.878 19 C -0.177 4.177 20 N -0.535 5.535 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.014 3.986 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.244 0.756 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.230 0.770 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.424 -8.896 -5.023 24.642 hybrid contribution 1.155 -0.481 0.170 1.263 sum -21.269 -9.377 -4.853 23.746 Atomic orbital electron populations 1.21758 0.95966 1.01370 1.01796 1.21587 0.95736 0.96927 1.01930 1.21535 0.92602 0.97190 1.02385 1.21609 0.96210 0.95597 0.93697 1.22196 0.95418 0.95356 0.85766 1.86451 1.69734 1.63793 1.17366 1.22642 0.99348 0.97953 0.96396 1.22355 0.99812 0.90006 0.90253 1.47974 1.10785 1.47791 1.31729 1.15261 0.78948 0.80309 0.82514 1.90910 1.83066 1.41196 1.32131 1.44783 1.10688 1.49977 1.32654 1.20792 0.83125 0.97252 0.98818 1.19751 0.84029 0.86402 0.88339 1.90481 1.79173 1.39150 1.39730 1.41782 1.09286 1.39801 1.27500 1.19672 0.91000 1.25326 1.07474 0.87752 1.25330 0.98255 0.96107 0.98057 1.69607 1.21735 1.29348 1.32764 0.85867 0.78958 0.78753 0.80342 1.19804 1.20860 1.19788 1.22245 0.83626 0.94950 0.97795 0.93014 0.92854 0.92723 0.91878 0.92074 0.91820 0.90691 0.93488 0.93390 0.77517 0.90701 0.89573 0.90156 0.90985 0.75617 0.90047 0.90001 0.76993 0.91537 0.91386 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.80 5.41 -26.73 -0.14 -0.95 16 3 C -0.10 -0.74 3.81 -26.73 -0.10 -0.85 16 4 C -0.07 -0.61 0.57 -152.90 -0.09 -0.70 16 5 C 0.09 0.79 5.11 37.15 0.19 0.98 16 6 O -0.57 -5.02 12.46 -35.23 -0.44 -5.46 16 7 C -0.13 -0.99 5.82 -25.33 -0.15 -1.14 16 8 C 0.10 1.01 6.91 -2.41 -0.02 1.00 16 9 N -0.64 -8.77 3.31 -174.76 -0.58 -9.35 16 10 C 0.73 12.85 8.57 -86.92 -0.74 12.10 16 11 O -0.59 -12.46 16.61 5.29 0.09 -12.37 16 12 N -0.72 -12.92 5.51 -66.41 -0.37 -13.28 16 13 C 0.13 2.48 6.15 -5.19 -0.03 2.45 16 14 C 0.43 9.99 7.85 -10.99 -0.09 9.91 16 15 O -0.60 -15.42 15.24 5.55 0.08 -15.33 16 16 N -0.55 -13.75 5.29 -10.97 -0.06 -13.80 16 17 C -0.31 -8.33 9.68 -14.93 -0.14 -8.47 16 18 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.89 -23.99 13.05 55.50 0.72 -23.26 16 21 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 C 0.14 1.61 6.11 -2.19 -0.01 1.60 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.43 6.40 -51.93 -0.33 0.10 16 30 H 0.06 0.36 6.84 -51.93 -0.36 0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.65 7.61 -51.93 -0.40 0.25 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.34 6.77 -51.92 -0.35 -0.01 16 35 H 0.38 1.89 9.12 45.56 0.42 2.31 16 36 H 0.07 0.58 7.71 -51.93 -0.40 0.18 16 37 H 0.09 0.53 6.63 -51.93 -0.34 0.19 16 38 H 0.08 0.85 6.87 -51.93 -0.36 0.49 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.41 7.06 5.83 -40.82 -0.24 6.82 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.53 8.14 -51.92 -0.42 1.11 16 43 H 0.40 9.56 7.90 -40.82 -0.32 9.24 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 46 H 0.09 1.25 7.37 -51.93 -0.38 0.86 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -33.03 371.27 -7.39 -40.42 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -6.36 Total: 15.34 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: -1.06 Total: 15.95 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.28 Total: -59.70 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.27 Total: -33.16 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.03 -7.39 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359569951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.802 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds