Wall clock time and date at job start Tue Mar 31 2020 04:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47392 * 2 1 4 4 C 1.52995 * 109.47224 * 184.49222 * 3 2 1 5 5 C 1.52995 * 110.30785 * 59.04065 * 4 3 2 6 6 O 1.42902 * 109.47355 * 53.24783 * 5 4 3 7 7 C 1.54282 * 110.34381 * 296.86152 * 4 3 2 8 8 C 1.54389 * 104.96449 * 241.02378 * 7 4 3 9 9 N 1.48146 * 104.61602 * 336.13688 * 8 7 4 10 10 C 1.34775 * 127.83838 * 219.58881 * 9 8 7 11 11 O 1.21582 * 120.00019 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99651 * 0.02562 * 10 9 8 13 13 C 1.46505 * 119.99847 * 180.27762 * 12 10 9 14 14 C 1.50699 * 109.47314 * 179.72580 * 13 12 10 15 15 O 1.21287 * 119.99599 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99915 * 180.02562 * 14 13 12 17 17 C 1.37103 * 119.99677 * 180.02562 * 16 14 13 18 18 H 1.07992 * 120.00228 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99511 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00366 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99614 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47428 * 59.99620 * 21 19 17 23 23 H 1.48502 * 109.46848 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46969 * 299.99434 * 21 19 17 25 25 C 1.48144 * 104.32523 * 39.84153 * 9 8 7 26 26 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47141 * 300.00084 * 1 2 3 28 28 H 1.08998 * 109.46486 * 60.00217 * 1 2 3 29 29 H 1.09002 * 109.47623 * 239.99788 * 2 1 3 30 30 H 1.09003 * 109.46945 * 119.99659 * 2 1 3 31 31 H 1.09006 * 109.46617 * 64.49070 * 3 2 1 32 32 H 1.08997 * 109.46711 * 304.49621 * 3 2 1 33 33 H 1.08997 * 109.47662 * 173.25073 * 5 4 3 34 34 H 1.09008 * 109.47077 * 293.24950 * 5 4 3 35 35 H 0.96697 * 114.00399 * 180.02562 * 6 5 4 36 36 H 1.09005 * 110.34342 * 122.15486 * 7 4 3 37 37 H 1.09000 * 110.43256 * 359.94332 * 7 4 3 38 38 H 1.08998 * 110.40955 * 217.35098 * 8 7 4 39 39 H 1.09003 * 110.50460 * 94.96725 * 8 7 4 40 40 H 0.96991 * 120.00713 * 0.02562 * 12 10 9 41 41 H 1.08998 * 109.47279 * 299.73060 * 13 12 10 42 42 H 1.09009 * 109.46810 * 59.72594 * 13 12 10 43 43 H 0.97002 * 120.00395 * 359.97438 * 16 14 13 44 44 H 0.96999 * 120.00026 * 180.02562 * 20 19 17 45 45 H 1.08999 * 110.40722 * 78.94114 * 25 9 8 46 46 H 1.09001 * 110.40701 * 201.37398 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5659 1.4439 -0.1130 5 6 4.0038 0.7387 -1.3981 6 8 3.3283 1.3206 -2.5148 7 6 4.1954 0.7573 1.1169 8 6 5.0620 1.8481 1.7824 9 7 5.3680 2.8007 0.6898 10 6 6.5299 3.4410 0.4525 11 8 6.6242 4.1989 -0.4935 12 7 7.5873 3.2412 1.2640 13 6 8.8486 3.9420 1.0096 14 6 9.8600 3.5519 2.0565 15 8 9.5572 2.7656 2.9289 16 7 11.1008 4.0768 2.0233 17 6 12.0211 3.7215 2.9754 18 1 11.7516 3.0214 3.7522 19 6 13.3002 4.2632 2.9414 20 7 13.6281 5.1155 1.9965 21 14 14.5540 3.7796 4.2391 22 1 14.7835 2.3135 4.1837 23 1 15.8321 4.4904 3.9816 24 1 14.0431 4.1502 5.5833 25 6 4.1052 2.8945 -0.0791 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8935 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7439 1.9325 0.9276 32 1 1.6125 1.9790 -0.8470 33 1 5.0804 0.8514 -1.5257 34 1 3.7545 -0.3206 -1.3344 35 1 3.5579 0.9215 -3.3651 36 1 4.8167 -0.0825 0.8054 37 1 3.4189 0.4193 1.8030 38 1 5.9809 1.4150 2.1775 39 1 4.5055 2.3464 2.5762 40 1 7.5123 2.6364 2.0184 41 1 9.2232 3.6693 0.0230 42 1 8.6807 5.0183 1.0498 43 1 11.3431 4.7055 1.3253 44 1 14.5211 5.4933 1.9726 45 1 3.3998 3.5531 0.4275 46 1 4.3015 3.2517 -1.0901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359569951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:58 Heat of formation + Delta-G solvation = -149.787393 kcal Electronic energy + Delta-G solvation = -26394.366388 eV Core-core repulsion = 22510.558188 eV Total energy + Delta-G solvation = -3883.808200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59415 -40.41324 -39.57000 -37.18005 -36.25874 -35.65331 -35.27780 -33.39113 -32.52665 -30.39777 -29.43082 -27.12530 -27.09581 -25.92150 -24.07320 -22.58246 -21.39714 -21.05159 -20.12881 -19.93578 -19.10431 -18.09277 -17.54638 -17.37728 -17.06994 -16.59834 -16.51315 -16.31375 -15.93959 -15.60043 -15.24998 -15.04891 -14.96826 -14.37142 -14.14451 -14.00341 -13.88844 -13.59782 -13.54120 -13.30325 -13.05851 -12.90368 -12.89230 -12.59697 -12.47347 -12.17790 -12.13555 -11.91978 -11.56716 -11.55319 -11.42343 -11.34158 -11.17018 -10.79822 -10.57325 -10.37285 -10.10648 -9.61677 -8.51040 -6.01639 1.37984 1.39706 1.45210 1.55014 1.88070 2.04380 2.27761 2.85851 3.15650 3.15816 3.23250 3.52494 3.63499 3.92257 4.14486 4.17651 4.21419 4.30606 4.37147 4.40759 4.42173 4.44084 4.54194 4.63255 4.66406 4.70853 4.84400 4.87183 4.95353 5.03067 5.05362 5.11793 5.22795 5.27314 5.30957 5.37973 5.46955 5.51309 5.59911 5.91190 5.98712 6.46981 6.88183 6.89515 7.02460 7.39332 7.47407 7.92831 8.65573 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.032468 B = 0.002295 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.176517 B =12198.871265 C =12626.918167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.064 4.064 5 C 0.092 3.908 6 O -0.583 6.583 7 C -0.116 4.116 8 C 0.093 3.907 9 N -0.642 5.642 10 C 0.724 3.276 11 O -0.634 6.634 12 N -0.722 5.722 13 C 0.141 3.859 14 C 0.435 3.565 15 O -0.623 6.623 16 N -0.558 5.558 17 C -0.338 4.338 18 H 0.088 0.912 19 C -0.012 4.012 20 N -0.916 5.916 21 Si 0.999 3.001 22 H -0.269 1.269 23 H -0.272 1.272 24 H -0.269 1.269 25 C 0.133 3.867 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.393 0.607 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.409 0.591 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.399 0.601 44 H 0.280 0.720 45 H 0.079 0.921 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.427 -10.758 -4.483 26.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.130 4.130 4 C -0.065 4.065 5 C 0.014 3.986 6 O -0.391 6.391 7 C -0.154 4.154 8 C -0.030 4.030 9 N -0.379 5.379 10 C 0.426 3.574 11 O -0.516 6.516 12 N -0.380 5.380 13 C 0.013 3.987 14 C 0.221 3.779 15 O -0.511 6.511 16 N -0.194 5.194 17 C -0.467 4.467 18 H 0.106 0.894 19 C -0.213 4.213 20 N -0.556 5.556 21 Si 0.822 3.178 22 H -0.194 1.194 23 H -0.197 1.197 24 H -0.194 1.194 25 C 0.011 3.989 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.242 0.758 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.247 0.753 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.490 -10.184 -4.182 25.942 hybrid contribution 1.379 -0.092 -0.143 1.389 sum -22.111 -10.275 -4.325 24.763 Atomic orbital electron populations 1.21752 0.95666 1.01761 1.01702 1.21564 0.95964 0.95952 1.02356 1.21479 0.91196 0.98070 1.02278 1.21593 0.97135 0.93469 0.94281 1.22185 0.94052 0.96516 0.85835 1.86419 1.69764 1.64505 1.18370 1.22652 0.99609 0.97008 0.96117 1.22649 1.00384 0.90097 0.89836 1.48031 1.09966 1.47245 1.32684 1.15369 0.79745 0.80348 0.81958 1.90874 1.83943 1.43070 1.33669 1.44683 1.10375 1.50039 1.32929 1.20596 0.82756 0.97803 0.97555 1.20325 0.84003 0.85167 0.88360 1.90456 1.79663 1.40036 1.40947 1.41830 1.09741 1.40300 1.27488 1.19710 0.92320 1.26371 1.08272 0.89449 1.26165 0.99513 0.95653 0.99920 1.69679 1.22412 1.29668 1.33816 0.84903 0.76674 0.78553 0.77700 1.19416 1.19677 1.19440 1.22409 0.82954 0.97401 0.96172 0.92396 0.92485 0.93336 0.92169 0.90882 0.90880 0.92064 0.95776 0.91237 0.75762 0.90197 0.86830 0.90572 0.89247 0.75277 0.89174 0.89174 0.76708 0.91052 0.90304 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.23 5.41 30.60 0.17 -1.06 16 3 C -0.09 -1.18 3.81 30.59 0.12 -1.07 16 4 C -0.06 -1.01 0.57 -51.14 -0.03 -1.04 16 5 C 0.09 1.51 5.11 71.98 0.37 1.87 16 6 O -0.58 -9.95 12.46 -148.98 -1.86 -11.80 16 7 C -0.12 -1.52 5.82 31.50 0.18 -1.34 16 8 C 0.09 1.72 6.91 86.53 0.60 2.32 16 9 N -0.64 -17.16 3.31 -825.10 -2.73 -19.90 16 10 C 0.72 25.68 8.57 179.05 1.53 27.22 16 11 O -0.63 -27.06 16.61 -3.97 -0.07 -27.13 16 12 N -0.72 -25.77 5.51 -482.28 -2.66 -28.43 16 13 C 0.14 5.47 6.15 85.63 0.53 6.00 16 14 C 0.43 20.43 7.85 87.66 0.69 21.12 16 15 O -0.62 -32.36 15.24 -3.05 -0.05 -32.41 16 16 N -0.56 -28.37 5.29 -306.99 -1.62 -30.00 16 17 C -0.34 -18.64 9.68 84.04 0.81 -17.83 16 18 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 19 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 20 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 21 Si 1.00 41.72 29.55 68.60 2.03 43.75 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 C 0.13 3.07 6.11 86.68 0.53 3.59 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.66 6.40 -2.39 -0.02 0.64 16 30 H 0.07 0.59 6.84 -2.39 -0.02 0.57 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.98 7.61 -2.39 -0.02 0.96 16 33 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.85 6.77 -2.38 -0.02 0.83 16 35 H 0.39 3.69 9.12 -74.06 -0.68 3.01 16 36 H 0.08 1.02 7.71 -2.38 -0.02 1.00 16 37 H 0.11 0.93 6.63 -2.39 -0.02 0.91 16 38 H 0.08 1.50 6.87 -2.39 -0.02 1.49 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.41 14.14 5.83 -92.72 -0.54 13.59 16 41 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 42 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 43 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 44 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 45 H 0.08 1.63 7.88 -2.39 -0.02 1.61 16 46 H 0.06 1.76 7.37 -2.39 -0.02 1.74 16 Total: -1.00 -71.24 371.27 -0.92 -72.16 By element: Atomic # 1 Polarization: 44.44 SS G_CDS: -0.93 Total: 43.51 kcal Atomic # 6 Polarization: 32.20 SS G_CDS: 6.68 Total: 38.87 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -6.73 Total: -126.96 kcal Atomic # 8 Polarization: -69.37 SS G_CDS: -1.97 Total: -71.34 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -71.24 -0.92 -72.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359569951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.627 kcal (2) G-P(sol) polarization free energy of solvation -71.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds