Wall clock time and date at job start Tue Mar 31 2020 04:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47350 * 2 1 4 4 C 1.42896 * 114.00143 * 179.40739 * 3 2 1 5 5 C 1.52998 * 110.01872 * 303.01924 * 4 3 2 6 6 N 1.46507 * 109.47051 * 299.96584 * 5 4 3 7 7 C 1.34779 * 119.99557 * 175.59907 * 6 5 4 8 8 O 1.21583 * 120.00647 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99273 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99593 * 179.72415 * 9 7 6 11 11 C 1.50701 * 109.47040 * 179.97438 * 10 9 7 12 12 O 1.21294 * 119.99853 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99874 * 179.97438 * 11 10 9 14 14 C 1.37097 * 119.99915 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00206 * 359.97438 * 14 13 11 16 16 C 1.38957 * 120.00056 * 180.02562 * 14 13 11 17 17 N 1.31409 * 119.99675 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47266 * 59.99415 * 18 16 14 20 20 H 1.48500 * 109.47022 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46825 * 299.99866 * 18 16 14 22 22 C 1.54263 * 110.07103 * 64.43655 * 4 3 2 23 23 C 1.54891 * 104.19446 * 95.69918 * 22 4 3 24 24 C 1.54884 * 102.75124 * 37.93860 * 23 22 4 25 25 C 1.53870 * 110.03240 * 181.62740 * 4 3 2 26 26 H 1.09003 * 109.47186 * 299.99163 * 1 2 3 27 27 H 1.09000 * 109.47408 * 60.00005 * 1 2 3 28 28 H 1.09007 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46959 * 240.00095 * 2 1 3 30 30 H 1.08999 * 109.47004 * 120.00345 * 2 1 3 31 31 H 1.08999 * 109.47130 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47231 * 59.96164 * 5 4 3 33 33 H 0.96999 * 120.00099 * 355.59329 * 6 5 4 34 34 H 0.96999 * 120.00383 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47031 * 299.99746 * 10 9 7 36 36 H 1.09006 * 109.47195 * 59.99570 * 10 9 7 37 37 H 0.97002 * 120.00366 * 359.97438 * 13 11 10 38 38 H 0.97006 * 119.99779 * 180.02562 * 17 16 14 39 39 H 1.09006 * 110.48660 * 214.36989 * 22 4 3 40 40 H 1.08995 * 110.48895 * 337.02018 * 22 4 3 41 41 H 1.08999 * 110.75403 * 279.62183 * 23 22 4 42 42 H 1.09001 * 110.75783 * 156.25890 * 23 22 4 43 43 H 1.08995 * 110.48896 * 203.38194 * 24 23 22 44 44 H 1.09004 * 110.48323 * 80.73800 * 24 23 22 45 45 H 1.09006 * 110.03277 * 359.95424 * 25 4 3 46 46 H 1.09008 * 110.03514 * 121.38062 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4601 0.0135 5 6 4.0030 0.7247 1.2270 6 7 3.4621 1.3136 2.4546 7 6 3.7583 0.7682 3.6510 8 8 4.4740 -0.2128 3.7115 9 7 3.2603 1.3098 4.7803 10 6 3.5773 0.7133 6.0803 11 6 2.9028 1.5023 7.1728 12 8 2.2236 2.4675 6.8930 13 7 3.0534 1.1347 8.4607 14 6 2.4393 1.8522 9.4545 15 1 1.8353 2.7121 9.2055 16 6 2.5950 1.4735 10.7824 17 7 3.3304 0.4275 11.0855 18 14 1.7577 2.4506 12.1366 19 1 0.2878 2.4280 11.9270 20 1 2.0798 1.8466 13.4544 21 1 2.2406 3.8546 12.1049 22 6 4.0206 0.8741 -1.2859 23 6 4.2032 2.1045 -2.2088 24 6 4.6670 3.2055 -1.2231 25 6 3.8418 2.9423 0.0535 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.0891 0.8160 1.2283 32 1 3.7268 -0.3285 1.1771 33 1 2.8909 2.0961 2.4064 34 1 2.6890 2.0922 4.7320 35 1 3.2224 -0.3170 6.1035 36 1 4.6563 0.7295 6.2340 37 1 3.5956 0.3621 8.6844 38 1 3.4387 0.1629 12.0124 39 1 4.9819 0.3995 -1.0885 40 1 3.3269 0.1618 -1.7325 41 1 3.2583 2.3791 -2.6779 42 1 4.9679 1.9128 -2.9615 43 1 4.4450 4.1945 -1.6237 44 1 5.7326 3.1073 -1.0155 45 1 2.9546 3.5757 0.0617 46 1 4.4488 3.1379 0.9375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455028460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:54 Heat of formation + Delta-G solvation = -127.382656 kcal Electronic energy + Delta-G solvation = -26326.318257 eV Core-core repulsion = 22443.481599 eV Total energy + Delta-G solvation = -3882.836658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48976 -39.37564 -38.12020 -36.26839 -34.54228 -34.26800 -33.60715 -31.42095 -31.33442 -29.45585 -29.12319 -27.32517 -25.02359 -24.12774 -23.09446 -21.13171 -20.40323 -20.02281 -19.55011 -18.45200 -18.00946 -17.17704 -16.28190 -15.97686 -15.64070 -15.58091 -15.17853 -15.08951 -14.60351 -14.34713 -14.23215 -14.01234 -13.68963 -13.52151 -13.41502 -12.86619 -12.85781 -12.52449 -12.15382 -11.93671 -11.82664 -11.76322 -11.61584 -11.52115 -11.44280 -11.24716 -11.09151 -10.90202 -10.70921 -10.49678 -10.30197 -10.04238 -9.68007 -9.60978 -9.14170 -8.60378 -8.56668 -8.08253 -6.49702 -3.91718 2.79512 3.14922 3.22465 3.26448 3.39665 3.44521 3.77359 4.09731 4.15825 4.17395 4.39038 4.55963 4.75216 4.81766 4.92642 4.93863 5.04680 5.09119 5.16052 5.18818 5.19987 5.27632 5.35641 5.43561 5.52915 5.57122 5.64162 5.70950 5.73356 5.76180 5.89009 5.93055 5.95112 6.01218 6.02947 6.10440 6.49922 6.78569 7.02006 7.14277 7.47381 7.94028 8.27423 8.47227 8.82515 9.06314 9.41412 9.89506 10.67169 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024590 B = 0.002313 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.387181 B =12100.198314 C =12309.582444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.369 6.369 4 C 0.104 3.896 5 C 0.119 3.881 6 N -0.742 5.742 7 C 0.704 3.296 8 O -0.601 6.601 9 N -0.724 5.724 10 C 0.129 3.871 11 C 0.429 3.571 12 O -0.597 6.597 13 N -0.550 5.550 14 C -0.305 4.305 15 H 0.105 0.895 16 C 0.026 3.974 17 N -0.895 5.895 18 Si 0.934 3.066 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.273 1.273 22 C -0.147 4.147 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.116 4.116 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.407 0.593 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 0.384 -25.122 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.289 6.289 4 C 0.064 3.936 5 C -0.006 4.006 6 N -0.399 5.399 7 C 0.404 3.596 8 O -0.480 6.480 9 N -0.381 5.381 10 C 0.000 4.000 11 C 0.215 3.785 12 O -0.484 6.484 13 N -0.184 5.184 14 C -0.434 4.434 15 H 0.122 0.878 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.760 3.240 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.186 4.186 23 C -0.157 4.157 24 C -0.160 4.160 25 C -0.154 4.154 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.235 0.765 34 H 0.244 0.756 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.010 0.181 -24.999 25.021 hybrid contribution -0.409 0.318 0.916 1.053 sum 0.601 0.499 -24.083 24.096 Atomic orbital electron populations 1.21722 0.93659 1.02250 1.03040 1.22546 0.95482 0.84286 1.00386 1.87993 1.19623 1.26474 1.94786 1.22431 0.81529 0.96440 0.93190 1.21774 0.98628 0.97714 0.82466 1.44900 1.55882 1.34817 1.04323 1.15855 0.80606 0.82791 0.80357 1.90897 1.42623 1.28033 1.86441 1.44763 1.54596 1.34547 1.04223 1.20776 1.00483 0.97057 0.81641 1.19770 0.86909 0.87867 0.83993 1.90492 1.44938 1.30562 1.82418 1.41780 1.44302 1.28179 1.04181 1.19678 1.27637 1.11093 0.85037 0.87754 1.25324 0.97107 0.96726 0.98571 1.69611 1.38485 1.25149 1.20292 0.85873 0.79554 0.79446 0.79093 1.19788 1.20867 1.19792 1.22932 1.01696 0.98623 0.95303 1.22433 1.01391 0.94566 0.97302 1.22353 0.99714 0.99087 0.94891 1.22218 1.00674 0.93433 0.99039 0.91696 0.92079 0.91209 0.93279 0.92734 0.90894 0.91225 0.76544 0.75581 0.90096 0.90044 0.77017 0.91556 0.90303 0.90555 0.91154 0.91377 0.91209 0.91317 0.89999 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.45 5.94 37.16 0.22 0.67 16 3 O -0.37 -3.71 9.75 -35.23 -0.34 -4.05 16 4 C 0.10 0.92 0.65 -89.51 -0.06 0.86 16 5 C 0.12 1.30 3.82 -4.04 -0.02 1.28 16 6 N -0.74 -9.40 5.04 -65.22 -0.33 -9.73 16 7 C 0.70 11.74 8.57 -86.91 -0.74 11.00 16 8 O -0.60 -11.94 16.34 5.29 0.09 -11.85 16 9 N -0.72 -12.52 5.53 -66.41 -0.37 -12.89 16 10 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 11 C 0.43 9.97 7.85 -10.99 -0.09 9.88 16 12 O -0.60 -15.43 15.24 5.55 0.08 -15.35 16 13 N -0.55 -13.77 5.29 -10.96 -0.06 -13.82 16 14 C -0.31 -8.35 9.68 -14.93 -0.14 -8.49 16 15 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 17 N -0.90 -24.05 13.05 55.50 0.72 -23.32 16 18 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 22 C -0.15 -1.07 5.90 -25.07 -0.15 -1.22 16 23 C -0.12 -0.77 6.91 -24.74 -0.17 -0.94 16 24 C -0.12 -0.82 6.83 -25.08 -0.17 -0.99 16 25 C -0.12 -0.94 5.67 -25.62 -0.15 -1.08 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.38 6.29 -51.93 -0.33 0.06 16 30 H 0.05 0.57 6.38 -51.93 -0.33 0.24 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.82 6.54 -51.93 -0.34 0.48 16 33 H 0.40 4.52 8.00 -40.82 -0.33 4.19 16 34 H 0.41 6.89 7.45 -40.82 -0.30 6.59 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 40 H 0.08 0.54 6.09 -51.93 -0.32 0.22 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 46 H 0.08 0.68 7.42 -51.92 -0.39 0.29 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -31.79 373.61 -8.01 -39.80 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -7.21 Total: 16.84 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: -1.21 Total: 13.11 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.03 Total: -59.76 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.17 Total: -31.26 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.79 -8.01 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455028460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.581 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds