Wall clock time and date at job start Tue Mar 31 2020 04:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47350 * 2 1 4 4 C 1.42896 * 114.00143 * 179.40739 * 3 2 1 5 5 C 1.52998 * 110.01872 * 303.01924 * 4 3 2 6 6 N 1.46507 * 109.47051 * 299.96584 * 5 4 3 7 7 C 1.34779 * 119.99557 * 175.59907 * 6 5 4 8 8 O 1.21583 * 120.00647 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99273 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99593 * 179.72415 * 9 7 6 11 11 C 1.50701 * 109.47040 * 179.97438 * 10 9 7 12 12 O 1.21294 * 119.99853 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99874 * 179.97438 * 11 10 9 14 14 C 1.37097 * 119.99915 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00206 * 359.97438 * 14 13 11 16 16 C 1.38957 * 120.00056 * 180.02562 * 14 13 11 17 17 N 1.31409 * 119.99675 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47266 * 59.99415 * 18 16 14 20 20 H 1.48500 * 109.47022 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46825 * 299.99866 * 18 16 14 22 22 C 1.54263 * 110.07103 * 64.43655 * 4 3 2 23 23 C 1.54891 * 104.19446 * 95.69918 * 22 4 3 24 24 C 1.54884 * 102.75124 * 37.93860 * 23 22 4 25 25 C 1.53870 * 110.03240 * 181.62740 * 4 3 2 26 26 H 1.09003 * 109.47186 * 299.99163 * 1 2 3 27 27 H 1.09000 * 109.47408 * 60.00005 * 1 2 3 28 28 H 1.09007 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46959 * 240.00095 * 2 1 3 30 30 H 1.08999 * 109.47004 * 120.00345 * 2 1 3 31 31 H 1.08999 * 109.47130 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47231 * 59.96164 * 5 4 3 33 33 H 0.96999 * 120.00099 * 355.59329 * 6 5 4 34 34 H 0.96999 * 120.00383 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47031 * 299.99746 * 10 9 7 36 36 H 1.09006 * 109.47195 * 59.99570 * 10 9 7 37 37 H 0.97002 * 120.00366 * 359.97438 * 13 11 10 38 38 H 0.97006 * 119.99779 * 180.02562 * 17 16 14 39 39 H 1.09006 * 110.48660 * 214.36989 * 22 4 3 40 40 H 1.08995 * 110.48895 * 337.02018 * 22 4 3 41 41 H 1.08999 * 110.75403 * 279.62183 * 23 22 4 42 42 H 1.09001 * 110.75783 * 156.25890 * 23 22 4 43 43 H 1.08995 * 110.48896 * 203.38194 * 24 23 22 44 44 H 1.09004 * 110.48323 * 80.73800 * 24 23 22 45 45 H 1.09006 * 110.03277 * 359.95424 * 25 4 3 46 46 H 1.09008 * 110.03514 * 121.38062 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4601 0.0135 5 6 4.0030 0.7247 1.2270 6 7 3.4621 1.3136 2.4546 7 6 3.7583 0.7682 3.6510 8 8 4.4740 -0.2128 3.7115 9 7 3.2603 1.3098 4.7803 10 6 3.5773 0.7133 6.0803 11 6 2.9028 1.5023 7.1728 12 8 2.2236 2.4675 6.8930 13 7 3.0534 1.1347 8.4607 14 6 2.4393 1.8522 9.4545 15 1 1.8353 2.7121 9.2055 16 6 2.5950 1.4735 10.7824 17 7 3.3304 0.4275 11.0855 18 14 1.7577 2.4506 12.1366 19 1 0.2878 2.4280 11.9270 20 1 2.0798 1.8466 13.4544 21 1 2.2406 3.8546 12.1049 22 6 4.0206 0.8741 -1.2859 23 6 4.2032 2.1045 -2.2088 24 6 4.6670 3.2055 -1.2231 25 6 3.8418 2.9423 0.0535 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.0891 0.8160 1.2283 32 1 3.7268 -0.3285 1.1771 33 1 2.8909 2.0961 2.4064 34 1 2.6890 2.0922 4.7320 35 1 3.2224 -0.3170 6.1035 36 1 4.6563 0.7295 6.2340 37 1 3.5956 0.3621 8.6844 38 1 3.4387 0.1629 12.0124 39 1 4.9819 0.3995 -1.0885 40 1 3.3269 0.1618 -1.7325 41 1 3.2583 2.3791 -2.6779 42 1 4.9679 1.9128 -2.9615 43 1 4.4450 4.1945 -1.6237 44 1 5.7326 3.1073 -1.0155 45 1 2.9546 3.5757 0.0617 46 1 4.4488 3.1379 0.9375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455028460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:54 Heat of formation + Delta-G solvation = -150.676140 kcal Electronic energy + Delta-G solvation = -26327.328338 eV Core-core repulsion = 22443.481599 eV Total energy + Delta-G solvation = -3883.846739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.50604 -40.60742 -39.85698 -36.92651 -36.26390 -35.50964 -35.27065 -33.37190 -32.10035 -30.43362 -29.76699 -28.76108 -26.51652 -25.38041 -23.80487 -22.13612 -21.37962 -21.28970 -20.75608 -20.11175 -19.61883 -18.10210 -17.43220 -17.30859 -16.92734 -16.72351 -16.46491 -16.17446 -15.93556 -15.88213 -15.60089 -15.12894 -15.11196 -14.62252 -14.25764 -13.94883 -13.84568 -13.53760 -13.52102 -13.44632 -13.19440 -12.89446 -12.53822 -12.46904 -12.40520 -12.19837 -12.13574 -12.00508 -11.83834 -11.56178 -11.49665 -11.43516 -11.37579 -10.56141 -10.45953 -10.43112 -10.10446 -9.84233 -8.50716 -6.01036 1.38278 1.42287 1.51822 1.58745 1.89834 2.09423 2.28646 2.66413 3.05318 3.16395 3.31320 3.47451 3.57441 3.75387 4.09363 4.20333 4.22633 4.25731 4.31509 4.41214 4.43730 4.45736 4.50001 4.55372 4.60025 4.70791 4.81630 4.87553 4.95601 5.03099 5.06222 5.11286 5.21714 5.25232 5.29116 5.31108 5.38404 5.43054 5.48157 5.89070 5.93255 6.30349 6.48262 6.99035 7.03476 7.42170 7.50811 7.94584 8.65991 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024590 B = 0.002313 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.387181 B =12100.198314 C =12309.582444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.381 6.381 4 C 0.107 3.893 5 C 0.118 3.882 6 N -0.726 5.726 7 C 0.705 3.295 8 O -0.632 6.632 9 N -0.724 5.724 10 C 0.142 3.858 11 C 0.434 3.566 12 O -0.624 6.624 13 N -0.559 5.559 14 C -0.338 4.338 15 H 0.086 0.914 16 C -0.011 4.011 17 N -0.916 5.916 18 Si 0.997 3.003 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.270 1.270 22 C -0.146 4.146 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.117 4.117 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.408 0.592 34 H 0.409 0.591 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.948 0.620 -26.178 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.301 6.301 4 C 0.067 3.933 5 C -0.006 4.006 6 N -0.382 5.382 7 C 0.405 3.595 8 O -0.514 6.514 9 N -0.382 5.382 10 C 0.014 3.986 11 C 0.221 3.779 12 O -0.512 6.512 13 N -0.194 5.194 14 C -0.467 4.467 15 H 0.104 0.896 16 C -0.212 4.212 17 N -0.556 5.556 18 Si 0.820 3.180 19 H -0.195 1.195 20 H -0.196 1.196 21 H -0.195 1.195 22 C -0.184 4.184 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.154 4.154 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.244 0.756 34 H 0.247 0.753 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.078 0.425 -26.098 26.123 hybrid contribution -0.426 0.234 1.168 1.265 sum 0.652 0.659 -24.930 24.947 Atomic orbital electron populations 1.21728 0.93114 1.03010 1.02636 1.22606 0.95972 0.83955 1.00359 1.87988 1.20245 1.27016 1.94810 1.22486 0.81077 0.96789 0.92915 1.21944 0.98764 0.97589 0.82346 1.44834 1.55149 1.34539 1.03691 1.15931 0.80235 0.82445 0.80933 1.90875 1.44093 1.29473 1.86943 1.44689 1.54885 1.34654 1.03931 1.20584 1.00478 0.96646 0.80934 1.20403 0.85893 0.87375 0.84262 1.90469 1.45966 1.31827 1.82938 1.41826 1.44670 1.28356 1.04590 1.19701 1.29012 1.11633 0.86363 0.89578 1.26139 0.97315 0.97521 1.00176 1.69678 1.38908 1.25923 1.21094 0.84925 0.78481 0.78089 0.76479 1.19481 1.19605 1.19469 1.22943 1.01947 0.99103 0.94392 1.22426 1.01746 0.93843 0.97299 1.22361 0.99709 0.99646 0.94098 1.22231 1.00675 0.92773 0.99759 0.93074 0.91435 0.89929 0.91686 0.94338 0.90788 0.91986 0.75589 0.75319 0.89125 0.89001 0.76685 0.91050 0.89662 0.90195 0.91392 0.89965 0.90457 0.90803 0.90415 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.28 71.98 0.74 -1.57 16 2 C 0.05 0.82 5.94 71.98 0.43 1.25 16 3 O -0.38 -7.27 9.75 -148.98 -1.45 -8.72 16 4 C 0.11 1.76 0.65 -10.07 -0.01 1.76 16 5 C 0.12 2.48 3.82 86.38 0.33 2.81 16 6 N -0.73 -17.98 5.04 -478.53 -2.41 -20.39 16 7 C 0.70 23.16 8.57 179.05 1.53 24.70 16 8 O -0.63 -24.86 16.34 -3.98 -0.06 -24.92 16 9 N -0.72 -24.75 5.53 -482.28 -2.67 -27.42 16 10 C 0.14 5.35 6.15 85.63 0.53 5.88 16 11 C 0.43 20.28 7.85 87.66 0.69 20.97 16 12 O -0.62 -32.56 15.24 -3.07 -0.05 -32.61 16 13 N -0.56 -28.34 5.29 -306.98 -1.62 -29.96 16 14 C -0.34 -18.72 9.68 84.04 0.81 -17.91 16 15 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 16 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 17 N -0.92 -48.92 13.05 21.66 0.28 -48.63 16 18 Si 1.00 41.90 29.55 68.60 2.03 43.92 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 C -0.15 -1.84 5.90 31.67 0.19 -1.66 16 23 C -0.12 -1.24 6.91 31.88 0.22 -1.02 16 24 C -0.12 -1.38 6.83 31.67 0.22 -1.16 16 25 C -0.12 -1.75 5.67 31.32 0.18 -1.57 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.07 0.91 6.29 -2.38 -0.01 0.90 16 30 H 0.04 0.79 6.38 -2.39 -0.02 0.77 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.43 6.54 -2.39 -0.02 1.41 16 33 H 0.41 8.96 8.00 -92.71 -0.74 8.22 16 34 H 0.41 13.75 7.45 -92.71 -0.69 13.06 16 35 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 37 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 38 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 39 H 0.08 0.98 7.85 -2.38 -0.02 0.96 16 40 H 0.08 0.96 6.09 -2.39 -0.01 0.95 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.08 1.23 7.96 -2.38 -0.02 1.21 16 46 H 0.07 1.19 7.42 -2.38 -0.02 1.17 16 Total: -1.00 -67.04 373.61 -0.78 -67.82 By element: Atomic # 1 Polarization: 49.67 SS G_CDS: -1.14 Total: 48.52 kcal Atomic # 6 Polarization: 26.07 SS G_CDS: 6.32 Total: 32.39 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -6.42 Total: -126.40 kcal Atomic # 8 Polarization: -64.68 SS G_CDS: -1.56 Total: -66.25 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -67.04 -0.78 -67.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455028460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.861 kcal (2) G-P(sol) polarization free energy of solvation -67.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds