Wall clock time and date at job start Tue Mar 31 2020 04:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47313 * 2 1 4 4 C 1.42901 * 114.00105 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47077 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.58802 * 308.82108 * 5 4 3 7 7 C 1.53187 * 109.58606 * 188.53656 * 5 4 3 8 8 C 1.53038 * 109.31124 * 185.57967 * 7 5 4 9 9 C 1.53043 * 109.54087 * 61.36332 * 8 7 5 10 10 C 1.53190 * 109.31275 * 298.63537 * 9 8 7 11 11 N 1.46925 * 108.77410 * 54.63297 * 10 9 8 12 12 C 1.34781 * 120.62983 * 126.37211 * 11 10 9 13 13 O 1.21589 * 119.99725 * 186.47100 * 12 11 10 14 14 N 1.34768 * 119.99841 * 6.46517 * 12 11 10 15 15 C 1.46504 * 120.00004 * 185.16297 * 14 12 11 16 16 C 1.50693 * 109.47415 * 180.02562 * 15 14 12 17 17 O 1.21295 * 119.99933 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00204 * 180.02562 * 16 15 14 19 19 C 1.37105 * 120.00214 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99509 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00092 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99834 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00138 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46956 * 89.99774 * 23 21 19 25 25 H 1.48494 * 109.47444 * 210.00035 * 23 21 19 26 26 H 1.48504 * 109.47128 * 330.00239 * 23 21 19 27 27 H 1.09000 * 109.47149 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46922 * 300.00144 * 1 2 3 29 29 H 1.09000 * 109.46531 * 59.99960 * 1 2 3 30 30 H 1.09000 * 109.47418 * 239.99889 * 2 1 3 31 31 H 1.09003 * 109.47034 * 120.00019 * 2 1 3 32 32 H 1.09006 * 109.46703 * 60.00105 * 4 3 2 33 33 H 1.08994 * 109.47202 * 300.00111 * 4 3 2 34 34 H 1.08994 * 109.49939 * 65.62487 * 7 5 4 35 35 H 1.08999 * 109.52482 * 305.54175 * 7 5 4 36 36 H 1.08998 * 109.46252 * 301.34114 * 8 7 5 37 37 H 1.09007 * 109.45271 * 181.37506 * 8 7 5 38 38 H 1.09002 * 109.49903 * 178.68368 * 9 8 7 39 39 H 1.09004 * 109.52064 * 58.60381 * 9 8 7 40 40 H 1.08995 * 109.58663 * 174.41693 * 10 9 8 41 41 H 1.08994 * 109.58524 * 294.84842 * 10 9 8 42 42 H 0.96995 * 120.00416 * 5.16755 * 14 12 11 43 43 H 1.08999 * 109.47022 * 300.00589 * 15 14 12 44 44 H 1.08998 * 109.46927 * 60.00094 * 15 14 12 45 45 H 0.97005 * 120.00221 * 0.02562 * 18 16 15 46 46 H 0.96999 * 119.99440 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.8255 2.9383 -0.0001 6 1 3.2981 3.4569 -0.8007 7 6 5.3370 3.0663 -0.2137 8 6 5.7452 4.5347 -0.0748 9 6 5.4133 5.0270 1.3358 10 6 3.9026 4.9212 1.5669 11 7 3.4779 3.5415 1.2938 12 6 2.7831 2.8422 2.2129 13 8 2.5393 1.6659 2.0251 14 7 2.3588 3.4467 3.3402 15 6 1.7032 2.6625 4.3897 16 6 1.3283 3.5687 5.5339 17 8 1.5833 4.7532 5.4781 18 7 0.7099 3.0630 6.6194 19 6 0.3693 3.8873 7.6606 20 1 0.5970 4.9418 7.6112 21 6 -0.2679 3.3658 8.7799 22 7 -0.5436 2.0823 8.8406 23 14 -0.7326 4.4891 10.1982 24 1 -2.0995 5.0257 9.9773 25 1 -0.7017 3.7209 11.4687 26 1 0.2341 5.6137 10.2762 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8340 0.9764 -0.8892 33 1 3.8333 0.9767 0.8907 34 1 5.5950 2.7098 -1.2109 35 1 5.8621 2.4706 0.5329 36 1 5.2016 5.1335 -0.8056 37 1 6.8166 4.6319 -0.2505 38 1 5.7256 6.0660 1.4414 39 1 5.9374 4.4133 2.0685 40 1 3.6725 5.1764 2.6013 41 1 3.3816 5.6036 0.8954 42 1 2.4873 4.4010 3.4567 43 1 0.8044 2.1958 3.9867 44 1 2.3851 1.8902 4.7457 45 1 0.5063 2.1156 6.6643 46 1 -0.9888 1.7184 9.6218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458779607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:15 Heat of formation + Delta-G solvation = -98.140580 kcal Electronic energy + Delta-G solvation = -27344.488360 eV Core-core repulsion = 23462.919734 eV Total energy + Delta-G solvation = -3881.568627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56944 -38.46194 -37.33976 -37.24326 -34.44732 -33.76230 -32.74720 -32.17742 -31.31637 -30.53557 -27.67684 -26.34644 -24.59181 -24.22456 -22.50986 -22.10848 -21.04249 -19.61095 -19.40064 -18.14225 -17.60832 -16.40900 -16.26746 -15.90136 -15.38779 -15.34612 -14.82758 -14.76523 -14.39582 -14.37686 -14.15017 -13.81925 -13.75326 -13.34327 -13.17452 -12.88004 -12.78833 -12.33859 -12.12264 -11.97619 -11.85568 -11.60437 -11.41969 -11.21664 -11.12420 -11.06403 -10.90439 -10.83003 -10.61070 -10.44124 -10.29003 -9.60621 -9.33748 -9.08099 -8.57695 -8.48303 -8.31504 -8.06483 -6.48637 -3.90429 2.80525 3.13584 3.23535 3.28953 3.53518 3.79466 3.92174 4.06918 4.22353 4.61112 4.64645 4.75561 4.93597 5.00314 5.11869 5.16714 5.20373 5.23671 5.30728 5.41978 5.50603 5.53384 5.57335 5.62803 5.68885 5.71680 5.81542 5.83650 5.94654 5.97830 6.02036 6.08489 6.14161 6.16467 6.21082 6.30361 6.65558 6.93355 7.19151 7.48636 7.61640 7.95995 8.32701 8.49060 8.99521 9.07938 9.43356 9.91490 10.68402 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.003284 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.227879 B = 8524.149216 C =10018.128563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 O -0.366 6.366 4 C 0.077 3.923 5 C 0.169 3.831 6 H 0.073 0.927 7 C -0.129 4.129 8 C -0.116 4.116 9 C -0.135 4.135 10 C 0.110 3.890 11 N -0.628 5.628 12 C 0.708 3.292 13 O -0.567 6.567 14 N -0.728 5.728 15 C 0.131 3.869 16 C 0.430 3.570 17 O -0.599 6.599 18 N -0.550 5.550 19 C -0.304 4.304 20 H 0.105 0.895 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.933 3.067 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.269 1.269 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.029 0.971 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.403 0.597 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.396 0.604 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.104 -0.730 -18.562 21.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.003 4.003 3 O -0.285 6.285 4 C 0.000 4.000 5 C 0.065 3.935 6 H 0.091 0.909 7 C -0.167 4.167 8 C -0.154 4.154 9 C -0.173 4.173 10 C -0.014 4.014 11 N -0.367 5.367 12 C 0.410 3.590 13 O -0.445 6.445 14 N -0.388 5.388 15 C 0.003 3.997 16 C 0.216 3.784 17 O -0.485 6.485 18 N -0.185 5.185 19 C -0.433 4.433 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.536 5.536 23 Si 0.759 3.241 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.243 0.757 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.229 0.771 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.853 -0.781 -18.521 20.993 hybrid contribution -0.193 0.197 0.883 0.925 sum 9.660 -0.584 -17.638 20.118 Atomic orbital electron populations 1.21680 0.94587 1.01444 1.02701 1.22138 0.94792 0.84564 0.98795 1.87870 1.20060 1.25561 1.94966 1.22438 0.83475 0.94553 0.99532 1.20993 0.94304 0.93612 0.84639 0.90915 1.21906 0.94970 0.97511 1.02331 1.21478 1.01172 0.95675 0.97061 1.21923 0.96046 1.01876 0.97504 1.21640 0.94760 0.83022 1.01979 1.47112 1.58786 1.14404 1.16365 1.15733 0.78713 0.84933 0.79650 1.90871 1.62277 1.14346 1.77006 1.45016 1.63432 1.12820 1.17578 1.20709 0.98106 0.93442 0.87471 1.19818 0.84899 0.88867 0.84862 1.90482 1.60183 1.16572 1.81287 1.41789 1.50421 1.11404 1.14921 1.19722 1.35515 0.93683 0.94427 0.87738 1.25313 0.96929 0.96373 0.99128 1.69620 1.41293 1.11735 1.30935 0.85822 0.79053 0.79543 0.79660 1.20291 1.20834 1.19344 0.91842 0.91718 0.92741 0.95300 0.93298 0.95301 0.90534 0.90750 0.91193 0.91702 0.91599 0.90670 0.91345 0.89704 0.91564 0.75746 0.90139 0.90445 0.77059 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 37.16 0.38 -1.44 16 2 C 0.07 1.00 6.20 37.16 0.23 1.23 16 3 O -0.37 -5.69 7.97 -60.42 -0.48 -6.17 16 4 C 0.08 1.01 4.51 37.16 0.17 1.17 16 5 C 0.17 1.95 3.17 -67.60 -0.21 1.74 16 6 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 7 C -0.13 -1.11 5.36 -26.62 -0.14 -1.25 16 8 C -0.12 -0.88 5.88 -26.69 -0.16 -1.04 16 9 C -0.14 -1.18 6.08 -26.61 -0.16 -1.35 16 10 C 0.11 1.20 6.33 -3.71 -0.02 1.18 16 11 N -0.63 -8.42 2.97 -170.92 -0.51 -8.92 16 12 C 0.71 11.92 8.01 -86.92 -0.70 11.22 16 13 O -0.57 -10.46 9.86 -19.90 -0.20 -10.65 16 14 N -0.73 -12.88 5.38 -66.42 -0.36 -13.24 16 15 C 0.13 2.51 6.16 -5.19 -0.03 2.48 16 16 C 0.43 10.04 7.85 -10.99 -0.09 9.95 16 17 O -0.60 -15.52 15.24 5.54 0.08 -15.43 16 18 N -0.55 -13.82 5.29 -10.97 -0.06 -13.88 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 22 N -0.90 -24.09 13.05 55.50 0.72 -23.36 16 23 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.72 7.83 -51.93 -0.41 0.31 16 32 H 0.03 0.32 8.13 -51.93 -0.42 -0.10 16 33 H 0.08 1.15 6.30 -51.93 -0.33 0.83 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.02 5.78 -51.93 -0.30 0.72 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.40 7.09 5.06 -40.82 -0.21 6.88 16 43 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.40 9.58 7.90 -40.82 -0.32 9.25 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -31.34 366.10 -8.69 -40.03 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -7.41 Total: 14.48 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: -0.97 Total: 15.98 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.20 Total: -59.41 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.59 Total: -32.26 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.34 -8.69 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458779607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.112 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds