Wall clock time and date at job start Tue Mar 31 2020 04:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.50703 * 109.47126 * 89.99796 * 4 3 2 6 6 H 1.08002 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46767 * 89.99886 * 9 7 5 11 11 H 1.48493 * 109.47240 * 210.00027 * 9 7 5 12 12 H 1.48500 * 109.46974 * 329.99973 * 9 7 5 13 13 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 14 14 O 1.21283 * 120.00092 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00430 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47259 * 179.97438 * 15 13 3 17 17 C 1.46899 * 110.99695 * 294.29580 * 16 15 13 18 18 C 1.53247 * 109.33871 * 172.74887 * 17 16 15 19 19 N 1.47081 * 108.52114 * 53.83197 * 18 17 16 20 20 C 1.34774 * 120.88436 * 128.83612 * 19 18 17 21 21 O 1.21508 * 120.00321 * 179.97438 * 20 19 18 22 22 O 1.34643 * 119.99611 * 359.97438 * 20 19 18 23 23 C 1.45198 * 116.99825 * 180.02562 * 22 20 19 24 24 C 1.47080 * 118.23698 * 308.81442 * 19 18 17 25 25 C 1.46901 * 110.99746 * 169.99993 * 16 15 13 26 26 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 27 27 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 29 29 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 30 30 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 31 31 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 32 32 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 33 33 H 0.96995 * 119.99689 * 179.97438 * 8 7 5 34 34 H 1.09009 * 109.46564 * 299.99895 * 15 13 3 35 35 H 1.09001 * 109.47030 * 59.99569 * 15 13 3 36 36 H 1.08999 * 109.49471 * 292.70651 * 17 16 15 37 37 H 1.09001 * 109.49495 * 52.79448 * 17 16 15 38 38 H 1.08998 * 109.62708 * 294.12313 * 18 17 16 39 39 H 1.08996 * 109.63016 * 173.54258 * 18 17 16 40 40 H 1.09004 * 109.47532 * 59.99794 * 23 22 20 41 41 H 1.09001 * 109.47179 * 180.02562 * 23 22 20 42 42 H 1.08999 * 109.46935 * 299.99865 * 23 22 20 43 43 H 1.08998 * 109.63014 * 291.47834 * 24 19 18 44 44 H 1.09002 * 109.78927 * 170.98448 * 24 19 18 45 45 H 1.09004 * 109.49356 * 307.20854 * 25 16 15 46 46 H 1.09001 * 109.49423 * 67.29174 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1491 2.3896 2.8780 8 7 3.3491 3.1257 3.6181 9 14 5.9131 2.0955 3.4176 10 1 6.7852 3.1608 2.8610 11 1 5.9877 2.1193 4.9005 12 1 6.3689 0.7726 2.9203 13 6 2.2483 2.0147 -1.1672 14 8 2.6530 3.1580 -1.1672 15 6 2.0026 1.3025 -2.4723 16 7 2.3254 2.2008 -3.5887 17 6 1.4040 3.3443 -3.6276 18 6 1.8812 4.3447 -4.6858 19 7 2.0430 3.6328 -5.9626 20 6 1.4745 4.0996 -7.0919 21 8 1.6190 3.4987 -8.1381 22 8 0.7464 5.2317 -7.0607 23 6 0.1632 5.6751 -8.3143 24 6 2.8422 2.3981 -5.9744 25 6 2.3272 1.4742 -4.8655 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 2.0955 3.1410 1.1384 32 1 1.5817 1.6877 2.0284 33 1 3.6750 3.5155 4.4444 34 1 2.6328 0.4146 -2.5259 35 1 0.9548 1.0085 -2.5342 36 1 0.4028 2.9962 -3.8815 37 1 1.3845 3.8290 -2.6515 38 1 2.8366 4.7721 -4.3812 39 1 1.1420 5.1376 -4.7999 40 1 -0.5083 4.9054 -8.6951 41 1 -0.3958 6.5962 -8.1494 42 1 0.9561 5.8567 -9.0398 43 1 3.8899 2.6383 -5.7937 44 1 2.7414 1.9025 -6.9400 45 1 2.9771 0.6026 -4.7871 46 1 1.3130 1.1522 -5.1021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491420243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:29 Heat of formation + Delta-G solvation = -91.687060 kcal Electronic energy + Delta-G solvation = -27080.287471 eV Core-core repulsion = 23198.998690 eV Total energy + Delta-G solvation = -3881.288781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78951 -39.52431 -38.18464 -36.49334 -35.33688 -34.60473 -32.79111 -31.30131 -30.13024 -29.52440 -27.89104 -26.89686 -25.00345 -23.90330 -23.03895 -22.47658 -21.75736 -19.98991 -18.47291 -18.09764 -17.27967 -16.70802 -16.60711 -16.30133 -15.73783 -15.32441 -15.01906 -14.75563 -14.62333 -14.53892 -14.17695 -13.89982 -13.79091 -13.38353 -13.08393 -12.97444 -12.45360 -12.31659 -12.27414 -12.01346 -11.83316 -11.63027 -11.49506 -11.39117 -11.20185 -11.03152 -10.97687 -10.90901 -10.73026 -10.60373 -10.52643 -10.12170 -9.62325 -9.16235 -8.77657 -8.43081 -8.24035 -7.65346 -6.04181 -4.08615 1.97546 2.63931 3.31804 3.36151 3.38219 3.43480 3.55746 3.73790 4.12939 4.45668 4.73633 4.84059 4.89604 4.93440 4.97954 5.09756 5.14575 5.20332 5.23885 5.29060 5.31592 5.39844 5.42177 5.52585 5.55406 5.61936 5.70819 5.74274 5.92112 5.96760 5.99532 6.07675 6.20224 6.25697 6.43775 6.80670 7.01353 7.09976 7.19488 7.44002 7.55233 7.92606 8.08792 8.23811 8.42312 8.91105 9.11177 9.56683 11.03884 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019856 B = 0.002934 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.784794 B = 9539.861762 C = 9993.615532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.038 3.962 16 N -0.519 5.519 17 C 0.038 3.962 18 C 0.119 3.881 19 N -0.594 5.594 20 C 0.649 3.351 21 O -0.580 6.580 22 O -0.370 6.370 23 C 0.057 3.943 24 C 0.134 3.866 25 C 0.041 3.959 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.263 0.737 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.030 0.970 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -2.495 -18.536 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.292 3.708 14 O -0.400 6.400 15 C -0.093 4.093 16 N -0.244 5.244 17 C -0.091 4.091 18 C -0.003 4.003 19 N -0.335 5.335 20 C 0.404 3.596 21 O -0.470 6.470 22 O -0.284 6.284 23 C -0.038 4.038 24 C 0.012 3.988 25 C -0.088 4.088 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.120 0.880 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.110 0.890 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.111 -1.719 -18.628 20.013 hybrid contribution 0.100 -0.593 0.230 0.644 sum -7.012 -2.313 -18.398 19.824 Atomic orbital electron populations 1.22218 0.96891 1.01371 1.02211 1.21404 0.93397 0.84353 1.02636 1.48276 1.63863 1.13287 1.07724 1.19248 0.96231 0.93579 0.78054 1.21433 0.96918 1.31806 1.06165 0.92482 1.24930 0.97804 0.94957 0.96409 1.69931 1.35621 1.33560 1.14378 0.86508 0.84832 0.78644 0.77485 1.20533 1.21215 1.19959 1.20092 0.78822 0.87169 0.84679 1.90633 1.44772 1.17874 1.86752 1.22078 1.00457 0.96121 0.90683 1.61544 1.52314 1.08813 1.01721 1.22679 0.92464 0.92356 1.01575 1.21895 1.03150 0.94332 0.80925 1.47060 1.52534 1.26981 1.06891 1.18031 0.77788 0.79860 0.83935 1.90967 1.65573 1.60431 1.30013 1.86253 1.63689 1.40246 1.38175 1.23177 0.97793 0.99840 0.82969 1.21757 0.94722 0.82807 0.99475 1.22540 1.00464 0.96582 0.89183 0.93312 0.92200 0.91985 0.91901 0.89904 0.93932 0.95110 0.92752 0.88282 0.92559 0.95150 0.86816 0.89715 0.88814 0.91995 0.87998 0.91931 0.89940 0.88385 0.88976 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.61 5.94 -4.04 -0.02 1.59 16 3 N -0.60 -12.05 2.46 -175.05 -0.43 -12.48 16 4 C 0.25 6.30 5.16 -5.19 -0.03 6.27 16 5 C -0.52 -14.62 9.38 -34.44 -0.32 -14.95 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.51 9.93 7.33 -10.99 -0.08 9.85 16 14 O -0.52 -12.39 13.92 5.55 0.08 -12.32 16 15 C 0.04 0.53 4.00 -4.98 -0.02 0.51 16 16 N -0.52 -7.18 4.37 -235.75 -1.03 -8.21 16 17 C 0.04 0.51 5.25 -3.70 -0.02 0.49 16 18 C 0.12 1.47 6.61 -3.60 -0.02 1.44 16 19 N -0.59 -7.42 3.01 -178.24 -0.54 -7.96 16 20 C 0.65 8.73 8.44 54.05 0.46 9.18 16 21 O -0.58 -9.01 15.59 -19.28 -0.30 -9.31 16 22 O -0.37 -4.30 9.25 -40.33 -0.37 -4.67 16 23 C 0.06 0.46 10.56 101.05 1.07 1.52 16 24 C 0.13 1.49 6.59 -3.60 -0.02 1.46 16 25 C 0.04 0.44 5.62 -3.69 -0.02 0.42 16 26 H 0.05 0.59 7.26 -51.92 -0.38 0.21 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.78 6.43 -51.93 -0.33 0.44 16 30 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 31 H 0.04 1.22 7.43 -51.93 -0.39 0.84 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.38 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.10 1.23 7.23 -51.92 -0.38 0.86 16 35 H 0.06 0.70 7.20 -51.93 -0.37 0.32 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 1.86 5.77 -51.93 -0.30 1.56 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.04 6.98 -51.93 -0.36 0.68 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.10 1.06 7.07 -51.93 -0.37 0.69 16 45 H 0.09 0.83 7.99 -51.93 -0.41 0.41 16 46 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -34.56 372.21 -7.50 -42.06 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.48 Total: -1.47 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 1.24 Total: 17.66 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -1.26 Total: -54.28 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.60 Total: -26.29 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.56 -7.50 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491420243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.630 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds