Wall clock time and date at job start Tue Mar 31 2020 04:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.50703 * 109.47126 * 89.99796 * 4 3 2 6 6 H 1.08002 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46767 * 89.99886 * 9 7 5 11 11 H 1.48493 * 109.47240 * 210.00027 * 9 7 5 12 12 H 1.48500 * 109.46974 * 329.99973 * 9 7 5 13 13 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 14 14 O 1.21283 * 120.00092 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00430 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47259 * 179.97438 * 15 13 3 17 17 C 1.46899 * 110.99695 * 294.29580 * 16 15 13 18 18 C 1.53247 * 109.33871 * 172.74887 * 17 16 15 19 19 N 1.47081 * 108.52114 * 53.83197 * 18 17 16 20 20 C 1.34774 * 120.88436 * 128.83612 * 19 18 17 21 21 O 1.21508 * 120.00321 * 179.97438 * 20 19 18 22 22 O 1.34643 * 119.99611 * 359.97438 * 20 19 18 23 23 C 1.45198 * 116.99825 * 180.02562 * 22 20 19 24 24 C 1.47080 * 118.23698 * 308.81442 * 19 18 17 25 25 C 1.46901 * 110.99746 * 169.99993 * 16 15 13 26 26 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 27 27 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 29 29 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 30 30 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 31 31 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 32 32 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 33 33 H 0.96995 * 119.99689 * 179.97438 * 8 7 5 34 34 H 1.09009 * 109.46564 * 299.99895 * 15 13 3 35 35 H 1.09001 * 109.47030 * 59.99569 * 15 13 3 36 36 H 1.08999 * 109.49471 * 292.70651 * 17 16 15 37 37 H 1.09001 * 109.49495 * 52.79448 * 17 16 15 38 38 H 1.08998 * 109.62708 * 294.12313 * 18 17 16 39 39 H 1.08996 * 109.63016 * 173.54258 * 18 17 16 40 40 H 1.09004 * 109.47532 * 59.99794 * 23 22 20 41 41 H 1.09001 * 109.47179 * 180.02562 * 23 22 20 42 42 H 1.08999 * 109.46935 * 299.99865 * 23 22 20 43 43 H 1.08998 * 109.63014 * 291.47834 * 24 19 18 44 44 H 1.09002 * 109.78927 * 170.98448 * 24 19 18 45 45 H 1.09004 * 109.49356 * 307.20854 * 25 16 15 46 46 H 1.09001 * 109.49423 * 67.29174 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1491 2.3896 2.8780 8 7 3.3491 3.1257 3.6181 9 14 5.9131 2.0955 3.4176 10 1 6.7852 3.1608 2.8610 11 1 5.9877 2.1193 4.9005 12 1 6.3689 0.7726 2.9203 13 6 2.2483 2.0147 -1.1672 14 8 2.6530 3.1580 -1.1672 15 6 2.0026 1.3025 -2.4723 16 7 2.3254 2.2008 -3.5887 17 6 1.4040 3.3443 -3.6276 18 6 1.8812 4.3447 -4.6858 19 7 2.0430 3.6328 -5.9626 20 6 1.4745 4.0996 -7.0919 21 8 1.6190 3.4987 -8.1381 22 8 0.7464 5.2317 -7.0607 23 6 0.1632 5.6751 -8.3143 24 6 2.8422 2.3981 -5.9744 25 6 2.3272 1.4742 -4.8655 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 2.0955 3.1410 1.1384 32 1 1.5817 1.6877 2.0284 33 1 3.6750 3.5155 4.4444 34 1 2.6328 0.4146 -2.5259 35 1 0.9548 1.0085 -2.5342 36 1 0.4028 2.9962 -3.8815 37 1 1.3845 3.8290 -2.6515 38 1 2.8366 4.7721 -4.3812 39 1 1.1420 5.1376 -4.7999 40 1 -0.5083 4.9054 -8.6951 41 1 -0.3958 6.5962 -8.1494 42 1 0.9561 5.8567 -9.0398 43 1 3.8899 2.6383 -5.7937 44 1 2.7414 1.9025 -6.9400 45 1 2.9771 0.6026 -4.7871 46 1 1.3130 1.1522 -5.1021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491420243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:28 Heat of formation + Delta-G solvation = -116.501646 kcal Electronic energy + Delta-G solvation = -27081.363512 eV Core-core repulsion = 23198.998690 eV Total energy + Delta-G solvation = -3882.364822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77398 -40.87502 -39.32275 -37.49495 -36.85867 -35.72827 -34.84494 -32.24505 -31.61503 -30.67986 -29.09438 -28.18455 -26.31850 -24.86168 -24.61815 -23.87779 -22.83123 -20.92619 -19.89338 -19.14801 -18.59154 -18.26008 -17.82265 -17.62879 -17.22371 -16.51265 -16.36876 -15.91680 -15.75390 -15.74478 -15.38931 -15.03212 -14.82669 -14.62371 -14.40272 -14.22619 -13.88298 -13.51856 -13.34051 -13.18266 -13.08841 -13.01946 -12.85828 -12.63518 -12.53903 -12.45323 -12.26330 -12.18736 -12.09417 -11.82407 -11.81932 -11.65754 -11.62191 -10.62182 -10.50758 -9.96732 -9.39704 -9.23553 -8.19506 -6.33757 1.09923 1.38139 1.41270 1.50466 1.62541 1.91932 2.25147 2.42693 2.81998 2.95626 3.10170 3.69874 3.81557 3.95119 4.08719 4.14829 4.20641 4.24601 4.34352 4.35524 4.39714 4.46649 4.47771 4.51313 4.67061 4.68313 4.70800 4.82591 4.84412 4.96495 5.01031 5.02545 5.09088 5.19536 5.26052 5.28599 5.40493 5.62165 5.80939 5.92807 6.04728 6.10714 6.20751 6.74966 6.88841 7.10710 7.32774 7.59091 8.87249 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019856 B = 0.002934 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.784794 B = 9539.861762 C = 9993.615532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.261 1.261 13 C 0.497 3.503 14 O -0.576 6.576 15 C 0.053 3.947 16 N -0.540 5.540 17 C 0.044 3.956 18 C 0.127 3.873 19 N -0.594 5.594 20 C 0.647 3.353 21 O -0.604 6.604 22 O -0.376 6.376 23 C 0.050 3.950 24 C 0.131 3.869 25 C 0.048 3.952 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.036 0.964 29 H 0.102 0.898 30 H 0.070 0.930 31 H -0.004 1.004 32 H 0.019 0.981 33 H 0.266 0.734 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.134 0.866 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 -4.492 -20.083 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.576 4.576 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.208 1.208 11 H -0.202 1.202 12 H -0.185 1.185 13 C 0.285 3.715 14 O -0.455 6.455 15 C -0.077 4.077 16 N -0.265 5.265 17 C -0.084 4.084 18 C 0.005 3.995 19 N -0.334 5.334 20 C 0.402 3.598 21 O -0.496 6.496 22 O -0.290 6.290 23 C -0.044 4.044 24 C 0.010 3.990 25 C -0.080 4.080 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.056 0.944 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.014 0.986 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.081 0.919 41 H 0.152 0.848 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.121 0.879 45 H 0.135 0.865 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.111 -3.760 -20.195 21.738 hybrid contribution 0.039 0.078 0.674 0.680 sum -7.072 -3.681 -19.520 21.086 Atomic orbital electron populations 1.22144 0.94828 1.03363 1.01486 1.21729 0.95070 0.81504 1.03938 1.48291 1.64149 1.15154 1.06217 1.18646 0.95058 0.91502 0.80485 1.21721 0.97943 1.31678 1.06306 0.92848 1.25838 1.02198 0.94612 0.96540 1.70051 1.37667 1.34432 1.14848 0.85453 0.79311 0.78842 0.77432 1.20760 1.20163 1.18545 1.21149 0.77386 0.86795 0.86177 1.90611 1.46941 1.20338 1.87656 1.21982 1.02596 0.95818 0.87317 1.61481 1.52739 1.09299 1.02984 1.22497 0.93175 0.92631 1.00114 1.21770 1.02797 0.94283 0.80684 1.47156 1.52363 1.27333 1.06568 1.18167 0.77777 0.80112 0.83719 1.90944 1.66584 1.61285 1.30821 1.86262 1.63365 1.39381 1.39949 1.23495 0.97901 1.01128 0.81879 1.21869 0.94640 0.82497 0.99983 1.22587 1.01574 0.96720 0.87106 0.92343 0.88749 0.94442 0.88006 0.91150 0.98552 0.96309 0.92517 0.85573 0.89847 0.94083 0.90065 0.90887 0.87855 0.91914 0.84823 0.91992 0.89918 0.87870 0.86490 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.96 16 2 C 0.10 2.84 5.94 86.38 0.51 3.35 16 3 N -0.61 -24.52 2.46 -826.14 -2.03 -26.55 16 4 C 0.26 14.05 5.16 85.63 0.44 14.49 16 5 C -0.54 -30.71 9.38 25.60 0.24 -30.47 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 9 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 13 C 0.50 19.42 7.33 87.66 0.64 20.06 16 14 O -0.58 -28.31 13.92 -3.04 -0.04 -28.36 16 15 C 0.05 1.36 4.00 85.56 0.34 1.70 16 16 N -0.54 -13.91 4.37 -899.78 -3.93 -17.84 16 17 C 0.04 1.18 5.25 86.39 0.45 1.64 16 18 C 0.13 3.08 6.61 86.35 0.57 3.65 16 19 N -0.59 -14.13 3.01 -948.24 -2.85 -16.99 16 20 C 0.65 16.70 8.44 129.79 1.10 17.79 16 21 O -0.60 -18.16 15.59 19.81 0.31 -17.85 16 22 O -0.38 -8.29 9.25 -55.52 -0.51 -8.80 16 23 C 0.05 0.72 10.56 113.37 1.20 1.92 16 24 C 0.13 2.66 6.59 86.35 0.57 3.23 16 25 C 0.05 0.88 5.62 86.39 0.49 1.37 16 26 H 0.06 1.24 7.26 -2.38 -0.02 1.22 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 2.11 6.43 -2.39 -0.02 2.09 16 30 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 31 H 0.00 -0.22 7.43 -2.39 -0.02 -0.24 16 32 H 0.02 1.03 8.07 -2.38 -0.02 1.01 16 33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.13 2.57 7.23 -2.38 -0.02 2.56 16 35 H 0.08 1.72 7.20 -2.39 -0.02 1.71 16 36 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 2.75 5.77 -2.39 -0.01 2.74 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.10 2.26 6.98 -2.39 -0.02 2.25 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.10 2.02 7.07 -2.39 -0.02 2.01 16 45 H 0.12 1.60 7.99 -2.39 -0.02 1.58 16 46 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -78.54 372.21 1.96 -76.58 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.96 Total: 12.25 kcal Atomic # 6 Polarization: 28.88 SS G_CDS: 7.75 Total: 36.63 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -8.53 Total: -117.34 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -0.25 Total: -55.01 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -78.54 1.96 -76.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491420243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.920 kcal (2) G-P(sol) polarization free energy of solvation -78.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds