Wall clock time and date at job start Tue Mar 31 2020 04:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.47116 * 2 1 4 4 C 1.34775 * 119.99726 * 179.97438 * 3 2 1 5 5 O 1.21502 * 120.00541 * 0.02562 * 4 3 2 6 6 O 1.34636 * 119.99498 * 179.97438 * 4 3 2 7 7 C 1.45197 * 116.99967 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.47389 * 180.02562 * 7 6 4 9 9 H 1.09007 * 109.45359 * 183.41071 * 8 7 6 10 10 C 1.53034 * 109.46032 * 303.37891 * 8 7 6 11 11 C 1.53119 * 109.28077 * 179.19448 * 10 8 7 12 12 C 1.53124 * 109.15783 * 302.35001 * 11 10 8 13 13 C 1.53031 * 109.27953 * 57.65392 * 12 11 10 14 14 N 1.46846 * 109.52194 * 300.81519 * 13 12 11 15 15 C 1.46904 * 110.99922 * 185.83777 * 14 13 12 16 16 C 1.50698 * 109.47511 * 300.02681 * 15 14 13 17 17 O 1.21297 * 119.99644 * 354.43335 * 16 15 14 18 18 N 1.34774 * 120.00076 * 174.43129 * 16 15 14 19 19 C 1.37099 * 119.99644 * 179.97438 * 18 16 15 20 20 H 1.07995 * 120.00424 * 359.97438 * 19 18 16 21 21 C 1.38958 * 119.99491 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99723 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00113 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.46829 * 90.00215 * 23 21 19 25 25 H 1.48497 * 109.46908 * 210.00106 * 23 21 19 26 26 H 1.48503 * 109.47167 * 330.00087 * 23 21 19 27 27 H 1.08993 * 109.47203 * 299.99914 * 1 2 3 28 28 H 1.09005 * 109.46969 * 60.00033 * 1 2 3 29 29 H 1.09000 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47011 * 240.00209 * 2 1 3 31 31 H 1.08995 * 109.46964 * 120.00078 * 2 1 3 32 32 H 0.97000 * 119.99485 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47459 * 59.99999 * 7 6 4 34 34 H 1.09008 * 109.47109 * 299.99900 * 7 6 4 35 35 H 1.08992 * 109.50720 * 299.13926 * 10 8 7 36 36 H 1.09008 * 109.50442 * 59.21662 * 10 8 7 37 37 H 1.08994 * 109.52321 * 62.25260 * 11 10 8 38 38 H 1.08996 * 109.52668 * 182.44904 * 11 10 8 39 39 H 1.09001 * 109.49890 * 177.59635 * 12 11 10 40 40 H 1.09001 * 109.50356 * 297.70632 * 12 11 10 41 41 H 1.09007 * 109.46337 * 180.80375 * 13 12 11 42 42 H 1.09000 * 109.46390 * 60.83705 * 13 12 11 43 43 H 1.09000 * 109.46917 * 180.02562 * 15 14 13 44 44 H 1.09001 * 109.46986 * 60.02689 * 15 14 13 45 45 H 0.96993 * 120.00111 * 359.73035 * 18 16 15 46 46 H 0.97000 * 120.00070 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1330 0.7040 0.0005 6 8 3.7922 2.8969 0.0000 7 6 5.2316 3.0872 0.0000 8 6 5.5482 4.5841 0.0000 9 1 6.6272 4.7269 -0.0611 10 6 4.8771 5.2472 -1.2049 11 6 5.1799 6.7480 -1.1897 12 6 4.6878 7.3466 0.1310 13 6 5.3645 6.6227 1.2971 14 7 5.0436 5.1909 1.2384 15 6 5.5616 4.4865 2.4189 16 6 7.0590 4.6445 2.4813 17 8 7.6491 5.1939 1.5751 18 7 7.7424 4.1754 3.5440 19 6 9.1047 4.3187 3.6005 20 1 9.6303 4.8071 2.7932 21 6 9.8094 3.8346 4.6959 22 7 11.1151 3.9724 4.7503 23 14 8.9004 2.9893 6.0918 24 1 8.8155 1.5325 5.8166 25 1 9.6322 3.2108 7.3648 26 1 7.5309 3.5527 6.2037 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.3880 2.1185 -0.0004 33 1 5.6593 2.6250 -0.8897 34 1 5.6591 2.6257 0.8903 35 1 5.2633 4.8073 -2.1243 36 1 3.7994 5.0922 -1.1521 37 1 6.2547 6.9037 -1.2821 38 1 4.6680 7.2314 -2.0218 39 1 4.9387 8.4068 0.1658 40 1 3.6071 7.2254 0.2051 41 1 5.0054 7.0370 2.2393 42 1 6.4442 6.7561 1.2299 43 1 5.3105 3.4281 2.3496 44 1 5.1140 4.9080 3.3189 45 1 7.2701 3.7397 4.2705 46 1 11.6070 3.6348 5.5151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496976340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:46 Heat of formation + Delta-G solvation = -111.769568 kcal Electronic energy + Delta-G solvation = -27487.131071 eV Core-core repulsion = 23604.971447 eV Total energy + Delta-G solvation = -3882.159624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49272 -39.61353 -37.61045 -36.63944 -35.25108 -34.15334 -33.06567 -31.79040 -31.71080 -30.58402 -27.65990 -26.41419 -24.46926 -23.55192 -22.64940 -21.63033 -21.02860 -19.64750 -19.37247 -18.66027 -18.14850 -16.77241 -16.62256 -15.97289 -15.57913 -15.36083 -15.11429 -14.84256 -14.66662 -14.24128 -14.12946 -13.72581 -13.32419 -13.24977 -13.08013 -12.79205 -12.69292 -12.48361 -12.22646 -12.16920 -11.88782 -11.78080 -11.59185 -11.40900 -11.25203 -10.74015 -10.63679 -10.60860 -10.49888 -10.38101 -10.13759 -10.04914 -9.89553 -9.54565 -9.33583 -9.31134 -8.23022 -7.49385 -6.37559 -3.88648 2.21775 2.89081 2.99950 3.05125 3.13050 3.61563 4.05897 4.15366 4.24493 4.63054 4.64289 4.76050 4.92459 4.97498 5.01491 5.13060 5.18091 5.36299 5.42594 5.43187 5.49860 5.57250 5.65481 5.71460 5.73309 5.82060 5.87650 5.95185 5.97938 6.06616 6.10805 6.17511 6.22671 6.30795 6.37718 6.50145 6.57133 6.73459 7.29466 7.34565 7.40911 7.50772 8.08571 8.37984 8.51146 8.87804 9.35918 9.73315 10.75127 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.010970 B = 0.004216 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.858094 B = 6640.191123 C = 8504.865245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.714 5.714 4 C 0.641 3.359 5 O -0.577 6.577 6 O -0.350 6.350 7 C 0.094 3.906 8 C 0.070 3.930 9 H 0.108 0.892 10 C -0.105 4.105 11 C -0.119 4.119 12 C -0.111 4.111 13 C 0.038 3.962 14 N -0.500 5.500 15 C 0.031 3.969 16 C 0.414 3.586 17 O -0.578 6.578 18 N -0.581 5.581 19 C -0.308 4.308 20 H 0.120 0.880 21 C 0.043 3.957 22 N -0.877 5.877 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.268 1.268 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.406 0.594 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.371 0.629 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.689 -2.065 -8.360 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 N -0.375 5.375 4 C 0.394 3.606 5 O -0.466 6.466 6 O -0.263 6.263 7 C 0.019 3.981 8 C -0.039 4.039 9 H 0.125 0.875 10 C -0.143 4.143 11 C -0.157 4.157 12 C -0.149 4.149 13 C -0.090 4.090 14 N -0.224 5.224 15 C -0.101 4.101 16 C 0.200 3.800 17 O -0.463 6.463 18 N -0.219 5.219 19 C -0.437 4.437 20 H 0.137 0.863 21 C -0.160 4.160 22 N -0.517 5.517 23 Si 0.705 3.295 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.194 1.194 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.241 0.759 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.204 0.796 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.129 -2.198 -8.847 23.011 hybrid contribution 0.195 -0.460 1.403 1.489 sum -20.933 -2.658 -7.445 22.376 Atomic orbital electron populations 1.22016 0.94029 1.03381 1.02817 1.21268 0.94100 0.80971 1.02739 1.44681 1.04092 1.09550 1.79215 1.18312 0.83666 0.82435 0.76196 1.91005 1.55183 1.44873 1.55538 1.86341 1.27915 1.25937 1.86132 1.23287 0.75036 0.97081 1.02710 1.22135 1.01013 0.89941 0.90762 0.87500 1.21512 1.01448 0.95139 0.96194 1.21551 1.01295 0.95580 0.97272 1.21527 1.00379 0.98470 0.94488 1.22311 1.01561 0.87186 0.97937 1.62450 1.56582 1.02907 1.00425 1.22214 0.91976 1.00674 0.95198 1.21051 0.89686 0.84895 0.84381 1.90430 1.70389 1.47284 1.38208 1.42419 1.08341 1.52326 1.18826 1.19454 0.80156 1.36756 1.07306 0.86270 1.25076 0.95502 0.97587 0.97858 1.69623 1.05883 1.45176 1.30978 0.86681 0.79710 0.80582 0.82547 1.19462 1.20066 1.19395 0.91707 0.91799 0.90474 0.91341 0.91259 0.75908 0.90985 0.90857 0.92115 0.90959 0.91901 0.92402 0.92089 0.91869 0.91730 0.90726 0.89181 0.89171 0.79584 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 10.03 37.16 0.37 -0.43 16 2 C 0.13 1.08 6.39 -4.04 -0.03 1.06 16 3 N -0.71 -7.22 5.56 -65.28 -0.36 -7.58 16 4 C 0.64 9.24 8.75 54.05 0.47 9.71 16 5 O -0.58 -10.34 16.13 -19.27 -0.31 -10.65 16 6 O -0.35 -5.06 9.38 -40.31 -0.38 -5.44 16 7 C 0.09 1.47 4.66 37.16 0.17 1.64 16 8 C 0.07 1.11 1.84 -67.72 -0.12 0.98 16 9 H 0.11 2.05 5.66 -51.93 -0.29 1.76 16 10 C -0.11 -1.39 5.21 -26.65 -0.14 -1.53 16 11 C -0.12 -1.51 6.00 -26.61 -0.16 -1.67 16 12 C -0.11 -1.43 6.09 -26.65 -0.16 -1.59 16 13 C 0.04 0.59 5.00 -3.84 -0.02 0.58 16 14 N -0.50 -7.99 4.63 -228.12 -1.06 -9.04 16 15 C 0.03 0.53 5.44 -4.97 -0.03 0.51 16 16 C 0.41 9.06 7.18 -10.99 -0.08 8.99 16 17 O -0.58 -14.27 11.22 5.54 0.06 -14.21 16 18 N -0.58 -13.72 5.09 -10.96 -0.06 -13.78 16 19 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 20 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 21 C 0.04 1.19 5.50 -17.46 -0.10 1.09 16 22 N -0.88 -25.53 13.96 55.50 0.77 -24.75 16 23 Si 0.88 19.47 27.74 -169.99 -4.72 14.75 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.41 3.13 8.58 -40.82 -0.35 2.78 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.27 6.03 -51.92 -0.31 0.96 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.94 7.57 -51.92 -0.39 0.55 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.97 8.12 -51.92 -0.42 0.55 16 42 H 0.07 1.44 5.71 -51.93 -0.30 1.14 16 43 H 0.09 1.47 5.89 -51.93 -0.31 1.17 16 44 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 45 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -32.96 363.39 -7.77 -40.73 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -7.24 Total: 13.92 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 0.03 Total: 10.57 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.70 Total: -55.15 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.63 Total: -30.30 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.72 Total: 14.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.96 -7.77 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496976340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.041 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds