Wall clock time and date at job start Tue Mar 31 2020 04:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 C 1.34779 * 119.99461 * 155.00115 * 4 2 1 6 6 O 1.21275 * 120.00183 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99413 * 180.02562 * 5 4 2 8 8 C 1.53007 * 109.46734 * 180.02562 * 7 5 4 9 9 N 1.46496 * 109.46776 * 179.97438 * 8 7 5 10 10 C 1.34776 * 120.00017 * 179.97438 * 9 8 7 11 11 O 1.21586 * 119.99718 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00526 * 180.02562 * 10 9 8 13 13 C 1.47027 * 125.64279 * 359.69414 * 12 10 9 14 14 C 1.54339 * 107.26183 * 178.85070 * 13 12 10 15 15 C 1.55151 * 103.02144 * 338.13869 * 14 13 12 16 16 O 1.42906 * 111.00742 * 277.23668 * 15 14 13 17 17 C 1.50700 * 111.04093 * 153.39628 * 15 14 13 18 18 H 1.08007 * 119.99437 * 6.33459 * 17 15 14 19 19 C 1.37870 * 120.00546 * 186.33049 * 17 15 14 20 20 N 1.31509 * 119.99999 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 120.00024 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46636 * 90.00444 * 21 19 17 23 23 H 1.48499 * 109.47005 * 210.00510 * 21 19 17 24 24 H 1.48496 * 109.47267 * 330.00661 * 21 19 17 25 25 C 1.47423 * 125.65158 * 180.02562 * 12 10 9 26 26 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 27 27 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 30 30 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 31 31 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 33 33 H 0.96995 * 119.99814 * 335.00063 * 4 2 1 34 34 H 1.08994 * 109.46865 * 299.99905 * 7 5 4 35 35 H 1.08994 * 109.47394 * 60.00070 * 7 5 4 36 36 H 1.08997 * 109.47081 * 300.00030 * 8 7 5 37 37 H 1.09000 * 109.46831 * 60.00207 * 8 7 5 38 38 H 0.97000 * 120.00335 * 359.97438 * 9 8 7 39 39 H 1.09000 * 109.88351 * 298.39165 * 13 12 10 40 40 H 1.08994 * 109.88138 * 59.56113 * 13 12 10 41 41 H 1.09003 * 110.84724 * 219.67551 * 14 13 12 42 42 H 1.08999 * 110.51419 * 96.45343 * 14 13 12 43 43 H 0.96702 * 114.00018 * 173.64944 * 16 15 14 44 44 H 0.97008 * 120.00070 * 179.97438 * 20 19 17 45 45 H 1.08997 * 110.36507 * 322.92742 * 25 12 10 46 46 H 1.08998 * 110.36808 * 85.14285 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 3.2404 -1.2591 1.1944 6 8 3.9358 -1.1986 0.2028 7 6 3.7425 -1.9699 2.4248 8 6 5.1454 -2.5197 2.1593 9 7 5.6337 -3.2101 3.3555 10 6 6.8557 -3.7786 3.3538 11 8 7.5530 -3.7179 2.3596 12 7 7.3049 -4.4143 4.4541 13 6 6.5719 -4.5564 5.7207 14 6 7.4627 -5.3790 6.6755 15 6 8.4131 -6.1305 5.7065 16 8 7.7919 -7.3101 5.1918 17 6 9.7204 -6.4616 6.3791 18 1 9.8497 -6.2665 7.4335 19 6 10.7512 -7.0137 5.6487 20 7 10.5939 -7.2509 4.3648 21 14 12.3719 -7.4234 6.4825 22 1 12.3245 -8.8145 6.9998 23 1 13.4792 -7.2976 5.5010 24 1 12.6002 -6.4838 7.6095 25 6 8.6152 -5.0763 4.5893 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.4622 -0.7385 1.9895 34 1 3.7789 -1.2698 3.2594 35 1 3.0699 -2.7920 2.6694 36 1 5.1093 -3.2197 1.3245 37 1 5.8177 -1.6972 1.9150 38 1 5.0776 -3.2582 4.1488 39 1 6.3762 -3.5730 6.1481 40 1 5.6325 -5.0816 5.5483 41 1 6.8647 -6.0840 7.2531 42 1 8.0269 -4.7194 7.3348 43 1 8.3079 -7.7605 4.5091 44 1 11.3193 -7.6390 3.8508 45 1 8.8926 -5.5628 3.6542 46 1 9.3772 -4.3534 4.8806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591904409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:30 Heat of formation + Delta-G solvation = -124.123048 kcal Electronic energy + Delta-G solvation = -26177.650285 eV Core-core repulsion = 22294.954974 eV Total energy + Delta-G solvation = -3882.695311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.20257 -39.50828 -37.41399 -36.39524 -34.77509 -34.17733 -32.21623 -32.19631 -30.69722 -29.57604 -27.70660 -27.65102 -25.31505 -23.91017 -22.40634 -21.49784 -20.71661 -19.65151 -19.50152 -17.57327 -17.32243 -16.98931 -16.43525 -16.05899 -15.52811 -15.18842 -14.94627 -14.68536 -14.42530 -14.09967 -13.95407 -13.79284 -13.38210 -13.00800 -12.91279 -12.79327 -12.72388 -12.54625 -12.13647 -11.86209 -11.82050 -11.66053 -11.60877 -11.38237 -11.30296 -11.00979 -10.79589 -10.57825 -10.44291 -10.16511 -10.11824 -9.56118 -9.45038 -9.33270 -8.78622 -8.66380 -8.32171 -7.64573 -6.23917 -4.33968 2.38918 2.69247 3.22497 3.29560 3.31803 3.33657 3.81174 4.27845 4.33089 4.46705 4.59809 4.61358 4.79905 4.83041 4.86744 5.02971 5.13389 5.19212 5.27667 5.34999 5.42843 5.50533 5.66078 5.68628 5.77111 5.85270 5.88888 5.98564 6.03961 6.14954 6.19437 6.53502 6.72723 6.77739 6.92296 7.00649 7.15569 7.27658 7.36452 7.68515 7.77970 7.95239 8.06910 8.57868 8.70509 9.19157 9.33435 9.41599 10.83054 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.002206 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.497077 B =12688.931692 C =13006.110590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 C -0.164 4.164 4 N -0.730 5.730 5 C 0.519 3.481 6 O -0.530 6.530 7 C -0.153 4.153 8 C 0.156 3.844 9 N -0.754 5.754 10 C 0.716 3.284 11 O -0.593 6.593 12 N -0.629 5.629 13 C 0.106 3.894 14 C -0.116 4.116 15 C 0.248 3.752 16 O -0.583 6.583 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.891 5.891 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.114 3.886 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.400 0.600 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.391 0.609 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.381 0.619 44 H 0.270 0.730 45 H 0.085 0.915 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.671 13.681 -2.049 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 C -0.223 4.223 4 N -0.384 5.384 5 C 0.305 3.695 6 O -0.406 6.406 7 C -0.193 4.193 8 C 0.031 3.969 9 N -0.412 5.412 10 C 0.418 3.582 11 O -0.471 6.471 12 N -0.366 5.366 13 C -0.018 4.018 14 C -0.154 4.154 15 C 0.207 3.793 16 O -0.392 6.392 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.529 5.529 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.008 4.008 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.234 0.766 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.225 0.775 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.231 0.769 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.014 13.907 -3.344 24.600 hybrid contribution 0.684 -0.325 0.800 1.102 sum -19.330 13.583 -2.544 23.761 Atomic orbital electron populations 1.22076 0.94105 1.02672 1.02931 1.20949 0.93930 0.93116 0.89009 1.22191 1.02337 0.95720 1.02020 1.46130 1.18020 1.57348 1.16868 1.20463 0.81195 0.78308 0.89550 1.90762 1.55807 1.58988 1.35014 1.21827 0.98771 1.01604 0.97131 1.20732 0.91748 0.97022 0.87390 1.45071 1.17878 1.61489 1.16757 1.15480 0.81174 0.78620 0.82942 1.90908 1.57480 1.65739 1.32978 1.47939 1.20438 1.56984 1.11246 1.21921 0.95910 0.98558 0.85408 1.22588 0.97700 0.97915 0.97174 1.19639 0.89613 0.82027 0.87983 1.86095 1.50966 1.41751 1.60356 1.21444 0.97081 1.42876 0.96251 0.91564 1.25086 0.99135 0.94245 0.94817 1.69723 1.33843 1.42991 1.06368 0.86408 0.82443 0.78839 0.79229 1.20437 1.21023 1.19733 1.23132 0.80486 0.94580 1.02632 0.92071 0.90917 0.91923 0.89351 0.92519 0.91924 0.91653 0.76621 0.88212 0.88140 0.90999 0.91068 0.77538 0.93196 0.92729 0.90811 0.90455 0.76898 0.91988 0.89650 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 9.38 37.16 0.35 -0.32 16 2 C 0.13 0.92 3.18 -67.92 -0.22 0.70 16 3 C -0.16 -1.11 9.48 37.16 0.35 -0.76 16 4 N -0.73 -4.96 5.08 -53.80 -0.27 -5.24 16 5 C 0.52 5.29 7.79 -10.98 -0.09 5.20 16 6 O -0.53 -7.89 15.64 5.56 0.09 -7.81 16 7 C -0.15 -1.29 5.81 -27.88 -0.16 -1.45 16 8 C 0.16 2.16 4.96 -4.04 -0.02 2.14 16 9 N -0.75 -11.41 5.52 -65.23 -0.36 -11.77 16 10 C 0.72 15.04 8.49 -86.92 -0.74 14.30 16 11 O -0.59 -15.12 16.60 5.29 0.09 -15.03 16 12 N -0.63 -13.22 3.33 -176.22 -0.59 -13.80 16 13 C 0.11 1.81 6.15 -3.05 -0.02 1.79 16 14 C -0.12 -2.26 6.13 -24.89 -0.15 -2.41 16 15 C 0.25 6.01 0.87 -89.61 -0.08 5.93 16 16 O -0.58 -14.89 13.16 -35.23 -0.46 -15.35 16 17 C -0.54 -14.02 8.27 -34.44 -0.28 -14.30 16 18 H 0.07 1.68 7.79 -52.48 -0.41 1.28 16 19 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 20 N -0.89 -24.10 10.69 55.43 0.59 -23.51 16 21 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C 0.11 2.79 5.38 -2.52 -0.01 2.78 16 26 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.79 7.58 -51.93 -0.39 0.40 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.40 1.51 8.60 -40.82 -0.35 1.16 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.16 8.10 -51.93 -0.42 0.73 16 37 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.39 4.61 7.46 -40.82 -0.30 4.30 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 43 H 0.38 10.06 7.57 45.56 0.34 10.40 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.09 2.38 7.33 -51.93 -0.38 2.00 16 46 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -34.09 378.53 -8.35 -42.44 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -6.95 Total: 13.54 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -1.16 Total: 15.35 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.63 Total: -54.32 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.29 Total: -38.19 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.09 -8.35 -42.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591904409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.681 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds