Wall clock time and date at job start Tue Mar 31 2020 04:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 C 1.34779 * 119.99461 * 155.00115 * 4 2 1 6 6 O 1.21275 * 120.00183 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99413 * 180.02562 * 5 4 2 8 8 C 1.53007 * 109.46734 * 180.02562 * 7 5 4 9 9 N 1.46496 * 109.46776 * 179.97438 * 8 7 5 10 10 C 1.34776 * 120.00017 * 179.97438 * 9 8 7 11 11 O 1.21586 * 119.99718 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00526 * 180.02562 * 10 9 8 13 13 C 1.47027 * 125.64279 * 359.69414 * 12 10 9 14 14 C 1.54339 * 107.26183 * 178.85070 * 13 12 10 15 15 C 1.55151 * 103.02144 * 338.13869 * 14 13 12 16 16 O 1.42906 * 111.00742 * 277.23668 * 15 14 13 17 17 C 1.50700 * 111.04093 * 153.39628 * 15 14 13 18 18 H 1.08007 * 119.99437 * 6.33459 * 17 15 14 19 19 C 1.37870 * 120.00546 * 186.33049 * 17 15 14 20 20 N 1.31509 * 119.99999 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 120.00024 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46636 * 90.00444 * 21 19 17 23 23 H 1.48499 * 109.47005 * 210.00510 * 21 19 17 24 24 H 1.48496 * 109.47267 * 330.00661 * 21 19 17 25 25 C 1.47423 * 125.65158 * 180.02562 * 12 10 9 26 26 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 27 27 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 30 30 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 31 31 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 33 33 H 0.96995 * 119.99814 * 335.00063 * 4 2 1 34 34 H 1.08994 * 109.46865 * 299.99905 * 7 5 4 35 35 H 1.08994 * 109.47394 * 60.00070 * 7 5 4 36 36 H 1.08997 * 109.47081 * 300.00030 * 8 7 5 37 37 H 1.09000 * 109.46831 * 60.00207 * 8 7 5 38 38 H 0.97000 * 120.00335 * 359.97438 * 9 8 7 39 39 H 1.09000 * 109.88351 * 298.39165 * 13 12 10 40 40 H 1.08994 * 109.88138 * 59.56113 * 13 12 10 41 41 H 1.09003 * 110.84724 * 219.67551 * 14 13 12 42 42 H 1.08999 * 110.51419 * 96.45343 * 14 13 12 43 43 H 0.96702 * 114.00018 * 173.64944 * 16 15 14 44 44 H 0.97008 * 120.00070 * 179.97438 * 20 19 17 45 45 H 1.08997 * 110.36507 * 322.92742 * 25 12 10 46 46 H 1.08998 * 110.36808 * 85.14285 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 3.2404 -1.2591 1.1944 6 8 3.9358 -1.1986 0.2028 7 6 3.7425 -1.9699 2.4248 8 6 5.1454 -2.5197 2.1593 9 7 5.6337 -3.2101 3.3555 10 6 6.8557 -3.7786 3.3538 11 8 7.5530 -3.7179 2.3596 12 7 7.3049 -4.4143 4.4541 13 6 6.5719 -4.5564 5.7207 14 6 7.4627 -5.3790 6.6755 15 6 8.4131 -6.1305 5.7065 16 8 7.7919 -7.3101 5.1918 17 6 9.7204 -6.4616 6.3791 18 1 9.8497 -6.2665 7.4335 19 6 10.7512 -7.0137 5.6487 20 7 10.5939 -7.2509 4.3648 21 14 12.3719 -7.4234 6.4825 22 1 12.3245 -8.8145 6.9998 23 1 13.4792 -7.2976 5.5010 24 1 12.6002 -6.4838 7.6095 25 6 8.6152 -5.0763 4.5893 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.4622 -0.7385 1.9895 34 1 3.7789 -1.2698 3.2594 35 1 3.0699 -2.7920 2.6694 36 1 5.1093 -3.2197 1.3245 37 1 5.8177 -1.6972 1.9150 38 1 5.0776 -3.2582 4.1488 39 1 6.3762 -3.5730 6.1481 40 1 5.6325 -5.0816 5.5483 41 1 6.8647 -6.0840 7.2531 42 1 8.0269 -4.7194 7.3348 43 1 8.3079 -7.7605 4.5091 44 1 11.3193 -7.6390 3.8508 45 1 8.8926 -5.5628 3.6542 46 1 9.3772 -4.3534 4.8806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591904409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:29 Heat of formation + Delta-G solvation = -152.687924 kcal Electronic energy + Delta-G solvation = -26178.888951 eV Core-core repulsion = 22294.954974 eV Total energy + Delta-G solvation = -3883.933977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.32762 -40.82202 -39.12333 -37.12537 -36.12349 -36.00490 -34.21752 -33.05724 -32.01563 -30.85565 -29.46092 -28.08930 -27.07997 -25.18991 -23.89480 -22.19004 -21.52912 -21.43531 -20.97329 -19.25273 -18.80635 -18.18866 -17.25035 -17.18258 -17.00521 -16.68142 -16.52166 -16.19427 -15.52133 -15.41926 -15.04487 -14.88949 -14.66582 -14.47872 -14.42499 -13.80305 -13.73891 -13.50403 -13.28578 -13.21582 -13.05169 -12.85291 -12.81027 -12.53704 -12.45624 -12.30525 -12.28725 -12.21533 -12.05726 -11.90538 -11.38976 -11.17480 -10.93377 -10.65222 -10.32657 -10.23221 -10.10399 -9.31289 -8.22950 -6.40458 1.42282 1.44621 1.54384 1.57735 1.61980 2.15261 2.27317 2.39764 3.03119 3.14330 3.63631 3.82508 3.89710 4.06110 4.08841 4.12304 4.17717 4.22123 4.33572 4.38571 4.51575 4.66482 4.74682 4.76893 4.79076 4.85158 4.91109 4.94568 5.04922 5.10270 5.13260 5.27517 5.32880 5.33323 5.39520 5.46003 5.49251 5.56776 5.77804 6.07126 6.20932 6.57340 6.67457 7.08827 7.28185 7.28850 7.36308 7.58753 8.82015 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.002206 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.497077 B =12688.931692 C =13006.110590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.129 3.871 3 C -0.160 4.160 4 N -0.711 5.711 5 C 0.514 3.486 6 O -0.589 6.589 7 C -0.135 4.135 8 C 0.157 3.843 9 N -0.725 5.725 10 C 0.707 3.293 11 O -0.649 6.649 12 N -0.633 5.633 13 C 0.106 3.894 14 C -0.110 4.110 15 C 0.231 3.769 16 O -0.587 6.587 17 C -0.554 4.554 18 H 0.071 0.929 19 C 0.023 3.977 20 N -0.917 5.917 21 Si 0.965 3.035 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.263 1.263 25 C 0.127 3.873 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.419 0.581 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.414 0.586 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.372 0.628 44 H 0.268 0.732 45 H 0.040 0.960 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.631 14.870 0.675 27.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 C -0.219 4.219 4 N -0.364 5.364 5 C 0.301 3.699 6 O -0.469 6.469 7 C -0.175 4.175 8 C 0.032 3.968 9 N -0.383 5.383 10 C 0.409 3.591 11 O -0.532 6.532 12 N -0.370 5.370 13 C -0.016 4.016 14 C -0.148 4.148 15 C 0.191 3.809 16 O -0.394 6.394 17 C -0.592 4.592 18 H 0.089 0.911 19 C -0.178 4.178 20 N -0.556 5.556 21 Si 0.790 3.210 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.187 1.187 25 C 0.003 3.997 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.257 0.743 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.252 0.748 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.220 0.780 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -23.097 15.126 -0.528 27.615 hybrid contribution 1.564 -0.665 -0.077 1.701 sum -21.533 14.461 -0.605 25.946 Atomic orbital electron populations 1.22014 0.91431 1.03197 1.04212 1.21016 0.95888 0.92679 0.87953 1.22155 1.00299 0.95999 1.03413 1.45988 1.16988 1.55804 1.17645 1.20807 0.81661 0.78145 0.89272 1.90755 1.57615 1.61357 1.37184 1.21731 0.95356 1.03167 0.97242 1.20700 0.94681 0.95364 0.86047 1.44744 1.15837 1.59695 1.17986 1.15775 0.82424 0.78774 0.82124 1.90868 1.59505 1.67704 1.35103 1.47868 1.19646 1.56636 1.12817 1.22177 0.95484 1.00966 0.82949 1.22598 0.97302 0.98029 0.96860 1.19892 0.90739 0.81577 0.88734 1.86085 1.50942 1.42349 1.60044 1.21814 0.98154 1.42706 0.96572 0.91086 1.25870 1.02325 0.94306 0.95290 1.69860 1.34506 1.43659 1.07558 0.85452 0.78504 0.78764 0.78291 1.19983 1.21444 1.18745 1.22668 0.82088 0.94321 1.00591 0.90257 0.90186 0.91763 0.92203 0.90851 0.94986 0.90577 0.74317 0.84526 0.84766 0.93975 0.93600 0.74833 0.88698 0.90420 0.89401 0.89266 0.77973 0.92290 0.94172 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.38 71.98 0.68 -0.19 16 2 C 0.13 1.61 3.18 44.99 0.14 1.75 16 3 C -0.16 -2.01 9.48 71.98 0.68 -1.33 16 4 N -0.71 -8.10 5.08 -442.51 -2.25 -10.35 16 5 C 0.51 9.92 7.79 87.66 0.68 10.60 16 6 O -0.59 -18.31 15.64 -3.01 -0.05 -18.36 16 7 C -0.14 -1.88 5.81 29.85 0.17 -1.70 16 8 C 0.16 4.28 4.96 86.38 0.43 4.71 16 9 N -0.72 -20.59 5.52 -478.54 -2.64 -23.23 16 10 C 0.71 29.79 8.49 179.06 1.52 31.31 16 11 O -0.65 -34.70 16.60 -3.99 -0.07 -34.77 16 12 N -0.63 -26.20 3.33 -829.69 -2.76 -28.96 16 13 C 0.11 3.24 6.15 86.73 0.53 3.78 16 14 C -0.11 -4.00 6.13 31.79 0.19 -3.81 16 15 C 0.23 11.17 0.87 -10.14 -0.01 11.16 16 16 O -0.59 -30.24 13.16 -148.98 -1.96 -32.20 16 17 C -0.55 -28.89 8.27 25.60 0.21 -28.67 16 18 H 0.07 3.54 7.79 -2.91 -0.02 3.52 16 19 C 0.02 1.21 5.29 84.65 0.45 1.66 16 20 N -0.92 -51.35 10.69 21.44 0.23 -51.12 16 21 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 25 C 0.13 6.43 5.38 86.86 0.47 6.89 16 26 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.06 0.37 8.14 -2.38 -0.02 0.36 16 29 H 0.06 1.11 7.58 -2.39 -0.02 1.09 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.42 1.53 8.60 -92.71 -0.80 0.73 16 34 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.04 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 38 H 0.41 7.98 7.46 -92.71 -0.69 7.29 16 39 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 41 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 42 H 0.09 3.01 8.03 -2.39 -0.02 2.99 16 43 H 0.37 20.36 7.57 -74.06 -0.56 19.80 16 44 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 45 H 0.04 2.37 7.33 -2.39 -0.02 2.35 16 46 H 0.04 2.01 8.03 -2.39 -0.02 1.99 16 Total: -1.00 -81.28 378.53 -2.36 -83.63 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -1.05 Total: 34.85 kcal Atomic # 6 Polarization: 30.01 SS G_CDS: 6.15 Total: 36.17 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -7.42 Total: -113.66 kcal Atomic # 8 Polarization: -83.26 SS G_CDS: -2.07 Total: -85.33 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -81.28 -2.36 -83.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591904409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.053 kcal (2) G-P(sol) polarization free energy of solvation -81.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds