Wall clock time and date at job start Tue Mar 31 2020 04:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47306 * 2 1 4 4 C 1.52999 * 109.47306 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47528 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00431 * 180.02562 * 5 4 3 7 7 O 1.21543 * 119.99926 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00099 * 179.72251 * 6 5 4 9 9 C 1.34777 * 120.00128 * 180.26998 * 8 6 5 10 10 O 1.21243 * 119.99675 * 0.02562 * 9 8 6 11 11 C 1.50695 * 120.00401 * 180.02562 * 9 8 6 12 12 N 1.46896 * 109.47269 * 180.02562 * 11 9 8 13 13 C 1.48527 * 111.00315 * 52.60108 * 12 11 9 14 14 C 1.54935 * 103.22844 * 159.72000 * 13 12 11 15 15 C 1.54599 * 102.92403 * 322.58785 * 14 13 12 16 16 O 1.42896 * 110.39300 * 263.00109 * 15 14 13 17 17 C 1.50695 * 110.31275 * 140.86701 * 15 14 13 18 18 H 1.07997 * 120.00582 * 244.28376 * 17 15 14 19 19 C 1.37886 * 119.99497 * 64.28492 * 17 15 14 20 20 N 1.31510 * 120.00323 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99781 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47193 * 90.00062 * 21 19 17 23 23 H 1.48500 * 109.47068 * 210.00162 * 21 19 17 24 24 H 1.48503 * 109.47141 * 329.99757 * 21 19 17 25 25 C 1.47903 * 110.99793 * 170.00177 * 12 11 9 26 26 H 1.09003 * 109.46690 * 299.99774 * 1 2 3 27 27 H 1.09001 * 109.47054 * 60.00027 * 1 2 3 28 28 H 1.08995 * 109.46891 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47527 * 239.99882 * 2 1 3 30 30 H 1.09001 * 109.47054 * 119.99973 * 2 1 3 31 31 H 1.09003 * 109.47062 * 60.00453 * 3 2 1 32 32 H 1.08993 * 109.47193 * 300.00262 * 3 2 1 33 33 H 1.09009 * 109.47054 * 60.00359 * 4 3 2 34 34 H 1.08993 * 109.47533 * 300.00451 * 4 3 2 35 35 H 0.97000 * 119.99456 * 0.02562 * 5 4 3 36 36 H 0.97001 * 119.99727 * 0.27992 * 8 6 5 37 37 H 1.09008 * 109.46715 * 300.00409 * 11 9 8 38 38 H 1.08998 * 109.46954 * 60.00004 * 11 9 8 39 39 H 1.09003 * 110.66931 * 278.15790 * 13 12 11 40 40 H 1.08998 * 110.66645 * 41.28840 * 13 12 11 41 41 H 1.08996 * 110.73050 * 204.23032 * 14 13 12 42 42 H 1.09007 * 110.87728 * 81.01421 * 14 13 12 43 43 H 0.96704 * 113.99785 * 295.75835 * 16 15 14 44 44 H 0.96996 * 120.00465 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.91673 * 333.50299 * 25 12 11 46 46 H 1.08999 * 109.91977 * 94.60290 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0585 2.8236 0.0013 6 6 5.3835 3.0699 0.0014 7 8 6.1733 2.1461 0.0014 8 7 5.8328 4.3406 -0.0037 9 6 7.1578 4.5869 -0.0091 10 8 7.9457 3.6653 -0.0098 11 6 7.6602 6.0076 -0.0142 12 7 9.1292 6.0075 -0.0202 13 6 9.6570 5.1630 -1.1220 14 6 11.1041 5.6848 -1.3067 15 6 10.9543 7.2069 -1.0813 16 8 10.8390 7.8866 -2.3330 17 6 12.1307 7.7390 -0.3043 18 1 11.9833 8.1555 0.6811 19 6 13.3955 7.6941 -0.8517 20 7 13.5750 7.1873 -2.0519 21 14 14.8540 8.3530 0.1116 22 1 15.4397 7.2619 0.9311 23 1 15.8785 8.8680 -0.8319 24 1 14.4032 9.4531 1.0015 25 6 9.6583 7.3668 -0.2650 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9287 0.8907 35 1 3.4281 3.5609 0.0016 36 1 5.2024 5.0779 -0.0033 37 1 7.2936 6.5194 -0.9041 38 1 7.3002 6.5235 0.8759 39 1 9.6609 4.1119 -0.8332 40 1 9.0758 5.3107 -2.0322 41 1 11.4633 5.4777 -2.3147 42 1 11.7721 5.2488 -0.5636 43 1 11.6264 7.8204 -2.8904 44 1 14.4647 7.1561 -2.4371 45 1 8.9328 7.9513 -0.8308 46 1 9.8720 7.8586 0.6840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:41 Heat of formation + Delta-G solvation = -109.483339 kcal Electronic energy + Delta-G solvation = -26125.771758 eV Core-core repulsion = 22243.711273 eV Total energy + Delta-G solvation = -3882.060485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17580 -39.05095 -37.73181 -36.44360 -34.65828 -34.59514 -33.85622 -32.02166 -30.52655 -29.31869 -27.99081 -26.67543 -24.54363 -23.77324 -21.93206 -21.77871 -20.56597 -20.38636 -19.40099 -18.80768 -17.13156 -16.97163 -16.54293 -15.88824 -15.60236 -15.32685 -14.97584 -14.78475 -14.63842 -14.33430 -14.03715 -13.82132 -13.72298 -13.30482 -12.98489 -12.84631 -12.37631 -12.04381 -11.97501 -11.62765 -11.62075 -11.56935 -11.47540 -11.14521 -11.13023 -10.92113 -10.73162 -10.55727 -10.42938 -10.30315 -10.05546 -9.88157 -9.39691 -9.36319 -9.07262 -8.53670 -8.01541 -7.81741 -6.14473 -4.20428 2.16214 2.19751 3.25018 3.28668 3.35274 3.38686 3.68199 4.31242 4.36891 4.43165 4.56013 4.58529 4.64593 4.89572 5.02218 5.13437 5.14568 5.28843 5.38268 5.39361 5.40241 5.50337 5.58938 5.74672 5.77823 5.80497 5.98189 6.08829 6.12289 6.19111 6.32163 6.35536 6.42448 6.72914 6.96544 7.19776 7.32706 7.34465 7.57399 7.67492 7.70722 7.89568 8.14616 8.20803 8.27643 8.80691 9.45917 9.56511 10.93378 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.046925 B = 0.002090 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.556408 B =13391.472768 C =13474.841588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.134 3.866 5 N -0.742 5.742 6 C 0.693 3.307 7 O -0.530 6.530 8 N -0.694 5.694 9 C 0.513 3.487 10 O -0.443 6.443 11 C 0.031 3.969 12 N -0.499 5.499 13 C 0.027 3.973 14 C -0.118 4.118 15 C 0.242 3.758 16 O -0.596 6.596 17 C -0.528 4.528 18 H 0.062 0.938 19 C 0.068 3.932 20 N -0.899 5.899 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.055 3.945 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.397 0.603 36 H 0.407 0.593 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.026 0.974 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.384 0.616 44 H 0.267 0.733 45 H 0.037 0.963 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.753 -7.210 2.897 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.169 4.169 4 C 0.010 3.990 5 N -0.400 5.400 6 C 0.392 3.608 7 O -0.401 6.401 8 N -0.362 5.362 9 C 0.299 3.701 10 O -0.308 6.308 11 C -0.101 4.101 12 N -0.225 5.225 13 C -0.100 4.100 14 C -0.157 4.157 15 C 0.202 3.798 16 O -0.406 6.406 17 C -0.566 4.566 18 H 0.081 0.919 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.072 4.072 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.231 0.769 36 H 0.241 0.759 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.044 0.956 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.236 0.764 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.748 -8.756 3.509 26.484 hybrid contribution 0.285 1.322 -0.524 1.450 sum -24.463 -7.434 2.985 25.741 Atomic orbital electron populations 1.21764 0.95447 1.01886 1.01874 1.21436 0.96119 0.95770 1.02752 1.21834 0.93924 0.98280 1.02863 1.21305 0.93449 0.81449 1.02830 1.45263 1.05062 1.09492 1.80219 1.16169 0.82944 0.83246 0.78399 1.91085 1.54310 1.42444 1.52256 1.44286 1.10023 1.08366 1.73478 1.21056 0.80375 0.92800 0.75916 1.90802 1.53338 1.46208 1.40445 1.22263 0.93183 0.91430 1.03206 1.64837 1.02412 1.10194 1.45023 1.23573 0.97155 0.98965 0.90326 1.22995 0.92815 0.98538 1.01382 1.19349 0.90489 0.88019 0.81905 1.86054 1.44833 1.77795 1.31928 1.21687 0.91835 1.40446 1.02653 0.91932 1.25016 0.99017 0.94277 0.95080 1.69616 1.23254 1.45594 1.15525 0.86451 0.81791 0.79207 0.79679 1.20529 1.21202 1.19831 1.22937 0.96796 0.87741 0.99771 0.92670 0.92669 0.92535 0.91508 0.91514 0.91183 0.91174 0.91308 0.91307 0.76915 0.75856 0.91588 0.87638 0.88804 0.95598 0.91769 0.91327 0.76397 0.92350 0.94420 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.12 -0.56 5.93 -26.73 -0.16 -0.72 16 3 C -0.13 -0.59 5.33 -26.73 -0.14 -0.73 16 4 C 0.13 1.01 5.67 -4.04 -0.02 0.99 16 5 N -0.74 -5.93 5.56 -65.24 -0.36 -6.29 16 6 C 0.69 9.00 8.50 -86.92 -0.74 8.26 16 7 O -0.53 -9.98 14.74 -18.48 -0.27 -10.25 16 8 N -0.69 -7.63 5.24 -15.78 -0.08 -7.71 16 9 C 0.51 8.00 7.48 -10.99 -0.08 7.92 16 10 O -0.44 -9.27 11.92 -18.22 -0.22 -9.49 16 11 C 0.03 0.45 5.52 -4.98 -0.03 0.43 16 12 N -0.50 -10.01 5.26 -231.90 -1.22 -11.23 16 13 C 0.03 0.58 5.30 -1.90 -0.01 0.57 16 14 C -0.12 -2.94 5.50 -24.87 -0.14 -3.08 16 15 C 0.24 6.16 0.99 -90.41 -0.09 6.07 16 16 O -0.60 -15.69 12.93 -35.23 -0.46 -16.14 16 17 C -0.53 -14.44 8.10 -34.44 -0.28 -14.72 16 18 H 0.06 1.69 7.35 -52.49 -0.39 1.31 16 19 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 20 N -0.90 -24.63 10.88 55.43 0.60 -24.02 16 21 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.05 1.18 6.16 -2.75 -0.02 1.16 16 26 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.40 1.68 8.49 -40.82 -0.35 1.33 16 36 H 0.41 2.33 8.71 -40.82 -0.36 1.97 16 37 H 0.07 0.86 7.81 -51.92 -0.41 0.45 16 38 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 2.15 5.97 -51.93 -0.31 1.84 16 40 H 0.03 0.55 8.02 -51.93 -0.42 0.13 16 41 H 0.06 1.64 8.06 -51.93 -0.42 1.23 16 42 H 0.07 1.82 7.86 -51.92 -0.41 1.41 16 43 H 0.38 10.36 7.05 45.56 0.32 10.68 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.04 0.76 7.39 -51.93 -0.38 0.38 16 46 H 0.08 1.75 7.40 -51.93 -0.38 1.37 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -35.66 370.88 -9.72 -45.38 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.86 Total: 10.36 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -1.43 Total: 7.65 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -1.06 Total: -49.25 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.95 Total: -35.88 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.66 -9.72 -45.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.098 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds