Wall clock time and date at job start Tue Mar 31 2020 04:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47306 * 2 1 4 4 C 1.52999 * 109.47306 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47528 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00431 * 180.02562 * 5 4 3 7 7 O 1.21543 * 119.99926 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00099 * 179.72251 * 6 5 4 9 9 C 1.34777 * 120.00128 * 180.26998 * 8 6 5 10 10 O 1.21243 * 119.99675 * 0.02562 * 9 8 6 11 11 C 1.50695 * 120.00401 * 180.02562 * 9 8 6 12 12 N 1.46896 * 109.47269 * 180.02562 * 11 9 8 13 13 C 1.48527 * 111.00315 * 52.60108 * 12 11 9 14 14 C 1.54935 * 103.22844 * 159.72000 * 13 12 11 15 15 C 1.54599 * 102.92403 * 322.58785 * 14 13 12 16 16 O 1.42896 * 110.39300 * 263.00109 * 15 14 13 17 17 C 1.50695 * 110.31275 * 140.86701 * 15 14 13 18 18 H 1.07997 * 120.00582 * 244.28376 * 17 15 14 19 19 C 1.37886 * 119.99497 * 64.28492 * 17 15 14 20 20 N 1.31510 * 120.00323 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99781 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47193 * 90.00062 * 21 19 17 23 23 H 1.48500 * 109.47068 * 210.00162 * 21 19 17 24 24 H 1.48503 * 109.47141 * 329.99757 * 21 19 17 25 25 C 1.47903 * 110.99793 * 170.00177 * 12 11 9 26 26 H 1.09003 * 109.46690 * 299.99774 * 1 2 3 27 27 H 1.09001 * 109.47054 * 60.00027 * 1 2 3 28 28 H 1.08995 * 109.46891 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47527 * 239.99882 * 2 1 3 30 30 H 1.09001 * 109.47054 * 119.99973 * 2 1 3 31 31 H 1.09003 * 109.47062 * 60.00453 * 3 2 1 32 32 H 1.08993 * 109.47193 * 300.00262 * 3 2 1 33 33 H 1.09009 * 109.47054 * 60.00359 * 4 3 2 34 34 H 1.08993 * 109.47533 * 300.00451 * 4 3 2 35 35 H 0.97000 * 119.99456 * 0.02562 * 5 4 3 36 36 H 0.97001 * 119.99727 * 0.27992 * 8 6 5 37 37 H 1.09008 * 109.46715 * 300.00409 * 11 9 8 38 38 H 1.08998 * 109.46954 * 60.00004 * 11 9 8 39 39 H 1.09003 * 110.66931 * 278.15790 * 13 12 11 40 40 H 1.08998 * 110.66645 * 41.28840 * 13 12 11 41 41 H 1.08996 * 110.73050 * 204.23032 * 14 13 12 42 42 H 1.09007 * 110.87728 * 81.01421 * 14 13 12 43 43 H 0.96704 * 113.99785 * 295.75835 * 16 15 14 44 44 H 0.96996 * 120.00465 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.91673 * 333.50299 * 25 12 11 46 46 H 1.08999 * 109.91977 * 94.60290 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0585 2.8236 0.0013 6 6 5.3835 3.0699 0.0014 7 8 6.1733 2.1461 0.0014 8 7 5.8328 4.3406 -0.0037 9 6 7.1578 4.5869 -0.0091 10 8 7.9457 3.6653 -0.0098 11 6 7.6602 6.0076 -0.0142 12 7 9.1292 6.0075 -0.0202 13 6 9.6570 5.1630 -1.1220 14 6 11.1041 5.6848 -1.3067 15 6 10.9543 7.2069 -1.0813 16 8 10.8390 7.8866 -2.3330 17 6 12.1307 7.7390 -0.3043 18 1 11.9833 8.1555 0.6811 19 6 13.3955 7.6941 -0.8517 20 7 13.5750 7.1873 -2.0519 21 14 14.8540 8.3530 0.1116 22 1 15.4397 7.2619 0.9311 23 1 15.8785 8.8680 -0.8319 24 1 14.4032 9.4531 1.0015 25 6 9.6583 7.3668 -0.2650 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9287 0.8907 35 1 3.4281 3.5609 0.0016 36 1 5.2024 5.0779 -0.0033 37 1 7.2936 6.5194 -0.9041 38 1 7.3002 6.5235 0.8759 39 1 9.6609 4.1119 -0.8332 40 1 9.0758 5.3107 -2.0322 41 1 11.4633 5.4777 -2.3147 42 1 11.7721 5.2488 -0.5636 43 1 11.6264 7.8204 -2.8904 44 1 14.4647 7.1561 -2.4371 45 1 8.9328 7.9513 -0.8308 46 1 9.8720 7.8586 0.6840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:40 Heat of formation + Delta-G solvation = -139.097936 kcal Electronic energy + Delta-G solvation = -26127.055943 eV Core-core repulsion = 22243.711273 eV Total energy + Delta-G solvation = -3883.344671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.28909 -40.43231 -39.22114 -37.17405 -36.39963 -35.79106 -34.54851 -34.10529 -32.14556 -29.96531 -29.82694 -28.19506 -26.13813 -24.72029 -23.02364 -22.32923 -21.98779 -21.57250 -21.24689 -19.76269 -19.10741 -18.20032 -17.44238 -16.94191 -16.88752 -16.70968 -16.51699 -16.18414 -15.72834 -15.62593 -15.51591 -14.83622 -14.67591 -14.47958 -14.25442 -14.12619 -13.82669 -13.35749 -13.26790 -13.15273 -12.96232 -12.67585 -12.48654 -12.45552 -12.31816 -12.15823 -12.10664 -12.02767 -11.90714 -11.82944 -11.49155 -11.25264 -11.12793 -10.68919 -10.54655 -10.19085 -10.03635 -9.36365 -8.19822 -6.33258 1.00136 1.24574 1.42091 1.43761 1.53340 2.19716 2.40791 2.78884 3.04179 3.14600 3.65420 3.86104 3.90428 4.03173 4.18140 4.24004 4.27312 4.31972 4.44683 4.45422 4.51575 4.62954 4.64574 4.64828 4.85011 4.93424 4.95552 5.00507 5.10107 5.12046 5.26459 5.33705 5.34308 5.37568 5.39954 5.47757 5.52084 5.59393 5.77339 5.91031 6.11554 6.16218 6.58606 6.71802 7.12172 7.33571 7.36295 7.44847 8.86479 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.046925 B = 0.002090 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.556408 B =13391.472768 C =13474.841588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.118 4.118 4 C 0.131 3.869 5 N -0.715 5.715 6 C 0.688 3.312 7 O -0.592 6.592 8 N -0.670 5.670 9 C 0.517 3.483 10 O -0.504 6.504 11 C 0.031 3.969 12 N -0.513 5.513 13 C 0.045 3.955 14 C -0.113 4.113 15 C 0.226 3.774 16 O -0.598 6.598 17 C -0.552 4.552 18 H 0.060 0.940 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.961 3.039 22 H -0.280 1.280 23 H -0.281 1.281 24 H -0.267 1.267 25 C 0.066 3.934 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.420 0.580 36 H 0.435 0.565 37 H 0.096 0.904 38 H 0.148 0.852 39 H 0.080 0.920 40 H 0.031 0.969 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.378 0.622 44 H 0.268 0.732 45 H 0.055 0.945 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.426 -5.678 3.677 29.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.156 4.156 4 C 0.007 3.993 5 N -0.374 5.374 6 C 0.388 3.612 7 O -0.468 6.468 8 N -0.339 5.339 9 C 0.304 3.696 10 O -0.373 6.373 11 C -0.100 4.100 12 N -0.238 5.238 13 C -0.083 4.083 14 C -0.152 4.152 15 C 0.186 3.814 16 O -0.408 6.408 17 C -0.590 4.590 18 H 0.078 0.922 19 C -0.176 4.176 20 N -0.559 5.559 21 Si 0.787 3.213 22 H -0.206 1.206 23 H -0.206 1.206 24 H -0.192 1.192 25 C -0.062 4.062 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.258 0.742 36 H 0.275 0.725 37 H 0.113 0.887 38 H 0.166 0.834 39 H 0.099 0.901 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.228 0.772 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -27.548 -7.157 4.294 28.785 hybrid contribution 1.020 0.812 -0.773 1.516 sum -26.528 -6.345 3.522 27.503 Atomic orbital electron populations 1.21747 0.94675 1.02062 1.02312 1.21454 0.96731 0.95791 1.02369 1.21757 0.91096 0.98512 1.04186 1.21389 0.95597 0.80805 1.01480 1.45074 1.03605 1.10658 1.78035 1.16445 0.83894 0.82953 0.77930 1.91058 1.56298 1.44390 1.55072 1.43849 1.09173 1.08878 1.71987 1.21290 0.81257 0.92559 0.74528 1.90800 1.55227 1.47836 1.43472 1.22458 0.89628 0.91328 1.06543 1.64699 1.06258 1.08844 1.44033 1.23266 0.95242 0.98515 0.91241 1.22805 0.94359 0.98853 0.99174 1.19609 0.92337 0.87710 0.81759 1.86042 1.44396 1.78028 1.32297 1.21999 0.93098 1.40991 1.02927 0.92194 1.25748 1.01412 0.94469 0.95990 1.69709 1.23761 1.45912 1.16473 0.85507 0.78743 0.78574 0.78468 1.20634 1.20628 1.19161 1.22747 0.95360 0.88760 0.99287 0.92169 0.92247 0.92586 0.92038 0.91943 0.89730 0.89848 0.92859 0.92711 0.74203 0.72490 0.88660 0.83417 0.90148 0.95063 0.93721 0.94147 0.77191 0.92255 0.92669 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 71.98 0.71 -0.21 16 2 C -0.13 -0.98 5.93 30.59 0.18 -0.80 16 3 C -0.12 -0.79 5.33 30.59 0.16 -0.62 16 4 C 0.13 1.85 5.67 86.38 0.49 2.34 16 5 N -0.72 -9.87 5.56 -478.59 -2.66 -12.53 16 6 C 0.69 17.05 8.50 179.06 1.52 18.57 16 7 O -0.59 -22.78 14.74 18.91 0.28 -22.50 16 8 N -0.67 -13.01 5.24 -440.52 -2.31 -15.32 16 9 C 0.52 15.23 7.48 87.66 0.66 15.88 16 10 O -0.50 -21.32 11.92 19.85 0.24 -21.08 16 11 C 0.03 0.81 5.52 85.56 0.47 1.28 16 12 N -0.51 -19.80 5.26 -887.58 -4.67 -24.47 16 13 C 0.04 1.97 5.30 86.65 0.46 2.43 16 14 C -0.11 -5.77 5.50 31.80 0.17 -5.60 16 15 C 0.23 11.50 0.99 -10.66 -0.01 11.49 16 16 O -0.60 -31.56 12.93 -148.98 -1.93 -33.48 16 17 C -0.55 -30.36 8.10 25.60 0.21 -30.16 16 18 H 0.06 3.24 7.35 -2.91 -0.02 3.22 16 19 C 0.02 1.27 5.26 84.66 0.45 1.72 16 20 N -0.92 -51.07 10.88 21.45 0.23 -50.83 16 21 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 C 0.07 2.73 6.16 86.45 0.53 3.26 16 26 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.06 0.35 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.42 1.98 8.49 -92.71 -0.79 1.20 16 36 H 0.44 3.13 8.71 -92.71 -0.81 2.32 16 37 H 0.10 2.01 7.81 -2.38 -0.02 1.99 16 38 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.08 3.82 5.97 -2.39 -0.01 3.80 16 40 H 0.03 1.32 8.02 -2.39 -0.02 1.30 16 41 H 0.04 2.38 8.06 -2.39 -0.02 2.36 16 42 H 0.04 2.23 7.86 -2.38 -0.02 2.21 16 43 H 0.38 20.73 7.05 -74.05 -0.52 20.21 16 44 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 45 H 0.06 2.07 7.39 -2.39 -0.02 2.05 16 46 H 0.08 3.46 7.40 -2.39 -0.02 3.45 16 Total: -1.00 -81.14 370.88 -3.89 -85.03 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -1.11 Total: 30.07 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 6.01 Total: 19.59 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -9.40 Total: -103.16 kcal Atomic # 8 Polarization: -75.65 SS G_CDS: -1.41 Total: -77.06 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -81.14 -3.89 -85.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.072 kcal (2) G-P(sol) polarization free energy of solvation -81.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds