Wall clock time and date at job start Tue Mar 31 2020 04:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47371 * 2 1 4 4 N 1.46500 * 109.46468 * 119.99764 * 2 1 3 5 5 C 1.34779 * 119.99558 * 154.99817 * 4 2 1 6 6 O 1.21539 * 120.00055 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00023 * 179.97438 * 5 4 2 8 8 C 1.34774 * 120.00168 * 180.02562 * 7 5 4 9 9 O 1.21238 * 119.99934 * 359.97438 * 8 7 5 10 10 C 1.50702 * 120.00276 * 180.02562 * 8 7 5 11 11 H 1.09000 * 109.46724 * 299.99561 * 10 8 7 12 12 C 1.52997 * 109.46974 * 59.99366 * 10 8 7 13 13 N 1.46894 * 109.47097 * 179.97438 * 10 8 7 14 14 C 1.48562 * 111.00344 * 59.87285 * 13 10 8 15 15 C 1.54379 * 104.69842 * 159.09785 * 14 13 10 16 16 C 1.54257 * 105.06256 * 336.08765 * 15 14 13 17 17 O 1.42899 * 110.32334 * 118.89796 * 16 15 14 18 18 C 1.50699 * 110.32398 * 241.10546 * 16 15 14 19 19 H 1.07999 * 120.00074 * 118.54876 * 18 16 15 20 20 C 1.37874 * 120.00225 * 298.54451 * 18 16 15 21 21 N 1.31516 * 119.99741 * 0.02562 * 20 18 16 22 22 Si 1.86792 * 120.00595 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46923 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47381 * 119.99869 * 22 20 18 25 25 H 1.48500 * 109.47425 * 240.00505 * 22 20 18 26 26 C 1.48856 * 111.13147 * 175.19405 * 13 10 8 27 27 H 1.09004 * 109.47256 * 300.00234 * 1 2 3 28 28 H 1.09007 * 109.46949 * 59.99963 * 1 2 3 29 29 H 1.08997 * 109.47750 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46912 * 239.99145 * 2 1 3 31 31 H 1.09007 * 109.47114 * 299.99936 * 3 2 1 32 32 H 1.09004 * 109.47122 * 59.99684 * 3 2 1 33 33 H 1.08999 * 109.47507 * 179.97438 * 3 2 1 34 34 H 0.96994 * 120.00961 * 334.99938 * 4 2 1 35 35 H 0.96999 * 119.99549 * 359.97438 * 7 5 4 36 36 H 1.08998 * 109.46874 * 180.02562 * 12 10 8 37 37 H 1.08994 * 109.47623 * 300.00153 * 12 10 8 38 38 H 1.08999 * 109.46829 * 60.00850 * 12 10 8 39 39 H 1.09002 * 110.41176 * 40.25880 * 14 13 10 40 40 H 1.09002 * 110.41204 * 277.93787 * 14 13 10 41 41 H 1.08998 * 110.32365 * 94.98307 * 15 14 13 42 42 H 1.09002 * 110.32581 * 217.19029 * 15 14 13 43 43 H 0.96698 * 114.00379 * 61.45341 * 17 16 15 44 44 H 0.97003 * 119.99972 * 180.02562 * 21 20 18 45 45 H 1.09003 * 110.39541 * 82.21242 * 26 13 10 46 46 H 1.08998 * 110.39292 * 319.79096 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 3.2401 -1.2592 1.1945 6 8 3.9372 -1.1987 0.2007 7 7 3.6896 -1.8941 2.2952 8 6 4.9117 -2.4623 2.2936 9 8 5.6066 -2.4027 1.3020 10 6 5.4140 -3.1727 3.5241 11 1 5.4503 -2.4724 4.3585 12 6 4.4701 -4.3269 3.8676 13 7 6.7606 -3.7013 3.2689 14 6 7.7062 -2.6074 2.9280 15 6 9.1046 -3.1941 3.2173 16 6 8.8634 -4.3146 4.2497 17 8 9.2769 -5.5755 3.7195 18 6 9.6023 -4.0158 5.5287 19 1 9.0550 -3.8840 6.4504 20 6 10.9770 -3.9107 5.5223 21 7 11.6434 -4.0707 4.3998 22 14 11.8930 -3.5410 7.1076 23 1 10.9202 -3.4069 8.2217 24 1 12.8354 -4.6494 7.4049 25 1 12.6516 -2.2733 6.9570 26 6 7.3396 -4.3107 4.4974 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.4621 -0.7387 1.9895 35 1 3.1337 -1.9415 3.0886 36 1 4.8332 -4.8404 4.7578 37 1 3.4708 -3.9350 4.0568 38 1 4.4339 -5.0272 3.0332 39 1 7.5221 -1.7361 3.5565 40 1 7.6160 -2.3414 1.8748 41 1 9.5383 -3.6060 2.3061 42 1 9.7575 -2.4280 3.6356 43 1 10.2180 -5.6213 3.5022 44 1 12.6107 -3.9972 4.3953 45 1 6.9726 -5.3291 4.6255 46 1 7.0981 -3.7059 5.3714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:39 Heat of formation + Delta-G solvation = -103.869547 kcal Electronic energy + Delta-G solvation = -27150.060187 eV Core-core repulsion = 23268.243134 eV Total energy + Delta-G solvation = -3881.817053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24150 -39.21797 -37.78887 -36.10457 -34.93232 -34.61700 -32.10686 -32.07632 -31.27314 -28.03279 -27.78299 -27.59177 -25.38626 -24.27173 -22.30719 -21.11938 -20.60676 -20.16335 -19.27580 -18.90468 -17.15662 -16.87535 -16.08970 -16.00770 -15.52922 -15.14633 -14.84946 -14.61214 -14.45325 -14.15252 -13.90128 -13.36960 -13.20469 -12.92544 -12.73634 -12.67100 -12.53673 -12.43359 -12.19725 -11.79421 -11.76746 -11.43837 -11.33081 -11.25623 -11.09455 -11.00571 -10.71432 -10.46562 -10.43769 -10.29193 -10.02886 -9.79837 -9.41205 -9.30295 -9.08418 -8.55978 -8.03615 -7.81062 -6.17389 -4.26665 2.18662 2.22312 3.22273 3.27263 3.30962 3.33899 3.70082 4.29860 4.46070 4.48850 4.60350 4.67871 4.86755 5.06666 5.11437 5.19027 5.22940 5.29613 5.40882 5.53248 5.54924 5.64259 5.79348 5.81173 5.94030 6.01297 6.03634 6.08126 6.20094 6.20568 6.30009 6.42409 6.54851 6.69408 7.02463 7.14692 7.36331 7.38878 7.53570 7.60682 7.65759 7.84206 8.15484 8.24126 8.30947 8.76297 9.42134 9.61547 10.89242 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029374 B = 0.002729 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.994954 B =10257.488761 C =10439.789038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.152 3.848 3 C -0.166 4.166 4 N -0.738 5.738 5 C 0.693 3.307 6 O -0.530 6.530 7 N -0.694 5.694 8 C 0.519 3.481 9 O -0.441 6.441 10 C 0.056 3.944 11 H 0.069 0.931 12 C -0.140 4.140 13 N -0.489 5.489 14 C 0.029 3.971 15 C -0.119 4.119 16 C 0.253 3.747 17 O -0.585 6.585 18 C -0.537 4.537 19 H 0.060 0.940 20 C 0.069 3.931 21 N -0.892 5.892 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.283 1.283 26 C 0.052 3.948 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.396 0.604 35 H 0.406 0.594 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.379 0.621 44 H 0.266 0.734 45 H 0.075 0.925 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.848 7.952 -2.187 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 C -0.224 4.224 4 N -0.396 5.396 5 C 0.394 3.606 6 O -0.401 6.401 7 N -0.361 5.361 8 C 0.304 3.696 9 O -0.306 6.306 10 C -0.057 4.057 11 H 0.086 0.914 12 C -0.198 4.198 13 N -0.215 5.215 14 C -0.098 4.098 15 C -0.157 4.157 16 C 0.213 3.787 17 O -0.394 6.394 18 C -0.575 4.575 19 H 0.078 0.922 20 C -0.133 4.133 21 N -0.531 5.531 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.209 1.209 26 C -0.074 4.074 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.240 0.760 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.229 0.771 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.231 7.505 -4.200 23.837 hybrid contribution 0.551 1.097 2.366 2.666 sum -21.680 8.602 -1.834 23.396 Atomic orbital electron populations 1.22081 0.93929 1.02718 1.03008 1.20860 0.93699 0.92813 0.87943 1.22221 1.02530 0.95682 1.02011 1.45410 1.16837 1.59705 1.17645 1.16195 0.82203 0.78672 0.83578 1.91074 1.55805 1.61311 1.31916 1.44298 1.19936 1.55369 1.16464 1.20962 0.79691 0.78126 0.90828 1.90810 1.53443 1.52542 1.33786 1.21814 0.94323 0.96612 0.92971 0.91395 1.21784 0.96784 0.97687 1.03522 1.65508 0.98295 1.25906 1.31751 1.23316 0.93853 0.91605 1.01046 1.22848 0.93083 1.00174 0.99642 1.19211 0.87771 0.81268 0.90470 1.86126 1.31048 1.36312 1.85896 1.21716 0.92000 1.49036 0.94793 0.92198 1.25013 0.97620 0.94169 0.96542 1.69731 1.08037 1.49708 1.25621 0.86441 0.79688 0.77927 0.83320 1.19776 1.20814 1.20945 1.23185 0.96526 0.98765 0.88966 0.92038 0.90714 0.91879 0.89179 0.91513 0.92523 0.91832 0.77031 0.75952 0.90617 0.92430 0.91036 0.95581 0.89665 0.92568 0.91123 0.77096 0.92361 0.90625 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.38 37.16 0.35 -0.37 16 2 C 0.15 1.17 3.18 -67.93 -0.22 0.96 16 3 C -0.17 -1.29 9.48 37.15 0.35 -0.93 16 4 N -0.74 -5.99 5.08 -58.69 -0.30 -6.29 16 5 C 0.69 9.05 8.47 -86.91 -0.74 8.32 16 6 O -0.53 -9.91 14.41 -18.47 -0.27 -10.18 16 7 N -0.69 -7.87 5.13 -15.78 -0.08 -7.96 16 8 C 0.52 8.31 6.83 -10.99 -0.08 8.24 16 9 O -0.44 -9.42 12.46 -18.21 -0.23 -9.64 16 10 C 0.06 0.84 2.26 -68.87 -0.16 0.69 16 11 H 0.07 0.92 7.98 -51.93 -0.41 0.50 16 12 C -0.14 -1.64 9.06 37.16 0.34 -1.30 16 13 N -0.49 -9.86 5.00 -223.15 -1.12 -10.97 16 14 C 0.03 0.63 5.50 -2.18 -0.01 0.62 16 15 C -0.12 -2.93 5.55 -25.35 -0.14 -3.07 16 16 C 0.25 6.42 1.05 -90.39 -0.10 6.33 16 17 O -0.59 -15.85 12.94 -35.23 -0.46 -16.30 16 18 C -0.54 -14.36 8.08 -34.44 -0.28 -14.64 16 19 H 0.06 1.57 7.58 -52.49 -0.40 1.18 16 20 C 0.07 1.84 5.02 -17.82 -0.09 1.75 16 21 N -0.89 -24.24 10.82 55.43 0.60 -23.64 16 22 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.05 1.12 4.82 -2.01 -0.01 1.11 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.91 7.58 -51.93 -0.39 0.51 16 31 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.40 1.77 8.62 -40.82 -0.35 1.42 16 35 H 0.41 2.59 8.13 -40.82 -0.33 2.25 16 36 H 0.07 0.89 7.09 -51.93 -0.37 0.53 16 37 H 0.06 0.43 7.57 -51.93 -0.39 0.04 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.03 0.53 7.97 -51.93 -0.41 0.12 16 40 H 0.09 1.95 6.30 -51.93 -0.33 1.63 16 41 H 0.06 1.45 7.98 -51.93 -0.41 1.04 16 42 H 0.07 1.84 7.23 -51.93 -0.38 1.47 16 43 H 0.38 10.39 7.33 45.56 0.33 10.72 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.08 1.60 7.65 -51.93 -0.40 1.20 16 46 H 0.05 0.93 7.48 -51.93 -0.39 0.54 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -35.32 367.18 -8.83 -44.15 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.73 Total: 11.96 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.77 Total: 7.69 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.90 Total: -48.86 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.95 Total: -36.13 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.32 -8.83 -44.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.720 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds