Wall clock time and date at job start Tue Mar 31 2020 04:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47371 * 2 1 4 4 N 1.46500 * 109.46468 * 119.99764 * 2 1 3 5 5 C 1.34779 * 119.99558 * 154.99817 * 4 2 1 6 6 O 1.21539 * 120.00055 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00023 * 179.97438 * 5 4 2 8 8 C 1.34774 * 120.00168 * 180.02562 * 7 5 4 9 9 O 1.21238 * 119.99934 * 359.97438 * 8 7 5 10 10 C 1.50702 * 120.00276 * 180.02562 * 8 7 5 11 11 H 1.09000 * 109.46724 * 299.99561 * 10 8 7 12 12 C 1.52997 * 109.46974 * 59.99366 * 10 8 7 13 13 N 1.46894 * 109.47097 * 179.97438 * 10 8 7 14 14 C 1.48562 * 111.00344 * 59.87285 * 13 10 8 15 15 C 1.54379 * 104.69842 * 159.09785 * 14 13 10 16 16 C 1.54257 * 105.06256 * 336.08765 * 15 14 13 17 17 O 1.42899 * 110.32334 * 118.89796 * 16 15 14 18 18 C 1.50699 * 110.32398 * 241.10546 * 16 15 14 19 19 H 1.07999 * 120.00074 * 118.54876 * 18 16 15 20 20 C 1.37874 * 120.00225 * 298.54451 * 18 16 15 21 21 N 1.31516 * 119.99741 * 0.02562 * 20 18 16 22 22 Si 1.86792 * 120.00595 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46923 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47381 * 119.99869 * 22 20 18 25 25 H 1.48500 * 109.47425 * 240.00505 * 22 20 18 26 26 C 1.48856 * 111.13147 * 175.19405 * 13 10 8 27 27 H 1.09004 * 109.47256 * 300.00234 * 1 2 3 28 28 H 1.09007 * 109.46949 * 59.99963 * 1 2 3 29 29 H 1.08997 * 109.47750 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46912 * 239.99145 * 2 1 3 31 31 H 1.09007 * 109.47114 * 299.99936 * 3 2 1 32 32 H 1.09004 * 109.47122 * 59.99684 * 3 2 1 33 33 H 1.08999 * 109.47507 * 179.97438 * 3 2 1 34 34 H 0.96994 * 120.00961 * 334.99938 * 4 2 1 35 35 H 0.96999 * 119.99549 * 359.97438 * 7 5 4 36 36 H 1.08998 * 109.46874 * 180.02562 * 12 10 8 37 37 H 1.08994 * 109.47623 * 300.00153 * 12 10 8 38 38 H 1.08999 * 109.46829 * 60.00850 * 12 10 8 39 39 H 1.09002 * 110.41176 * 40.25880 * 14 13 10 40 40 H 1.09002 * 110.41204 * 277.93787 * 14 13 10 41 41 H 1.08998 * 110.32365 * 94.98307 * 15 14 13 42 42 H 1.09002 * 110.32581 * 217.19029 * 15 14 13 43 43 H 0.96698 * 114.00379 * 61.45341 * 17 16 15 44 44 H 0.97003 * 119.99972 * 180.02562 * 21 20 18 45 45 H 1.09003 * 110.39541 * 82.21242 * 26 13 10 46 46 H 1.08998 * 110.39292 * 319.79096 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 3.2401 -1.2592 1.1945 6 8 3.9372 -1.1987 0.2007 7 7 3.6896 -1.8941 2.2952 8 6 4.9117 -2.4623 2.2936 9 8 5.6066 -2.4027 1.3020 10 6 5.4140 -3.1727 3.5241 11 1 5.4503 -2.4724 4.3585 12 6 4.4701 -4.3269 3.8676 13 7 6.7606 -3.7013 3.2689 14 6 7.7062 -2.6074 2.9280 15 6 9.1046 -3.1941 3.2173 16 6 8.8634 -4.3146 4.2497 17 8 9.2769 -5.5755 3.7195 18 6 9.6023 -4.0158 5.5287 19 1 9.0550 -3.8840 6.4504 20 6 10.9770 -3.9107 5.5223 21 7 11.6434 -4.0707 4.3998 22 14 11.8930 -3.5410 7.1076 23 1 10.9202 -3.4069 8.2217 24 1 12.8354 -4.6494 7.4049 25 1 12.6516 -2.2733 6.9570 26 6 7.3396 -4.3107 4.4974 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.4621 -0.7387 1.9895 35 1 3.1337 -1.9415 3.0886 36 1 4.8332 -4.8404 4.7578 37 1 3.4708 -3.9350 4.0568 38 1 4.4339 -5.0272 3.0332 39 1 7.5221 -1.7361 3.5565 40 1 7.6160 -2.3414 1.8748 41 1 9.5383 -3.6060 2.3061 42 1 9.7575 -2.4280 3.6356 43 1 10.2180 -5.6213 3.5022 44 1 12.6107 -3.9972 4.3953 45 1 6.9726 -5.3291 4.6255 46 1 7.0981 -3.7059 5.3714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:39 Heat of formation + Delta-G solvation = -133.643167 kcal Electronic energy + Delta-G solvation = -27151.351268 eV Core-core repulsion = 23268.243134 eV Total energy + Delta-G solvation = -3883.108134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.37536 -40.55332 -39.29511 -37.07708 -36.59100 -35.85952 -34.15903 -33.50257 -32.13861 -29.84487 -29.43174 -28.08948 -26.91573 -25.70660 -23.48072 -22.31826 -21.81364 -21.41126 -21.06379 -19.95216 -18.96200 -18.23118 -17.30196 -17.11361 -16.94696 -16.84474 -16.25411 -15.79466 -15.63301 -15.52366 -15.10750 -14.82527 -14.53304 -14.32550 -14.25519 -13.86291 -13.41434 -13.31548 -13.18137 -13.09682 -13.04799 -12.97827 -12.77379 -12.60179 -12.34891 -12.32119 -12.24457 -12.05078 -11.96287 -11.86183 -11.75386 -11.24782 -11.06754 -10.66771 -10.56004 -10.20280 -10.07586 -9.37412 -8.19406 -6.36572 1.00012 1.24647 1.40967 1.43710 1.54387 2.20325 2.39067 2.79864 3.05030 3.08025 3.59546 3.90782 3.92680 3.99444 4.07200 4.13990 4.16100 4.31446 4.31922 4.48166 4.69838 4.71238 4.73648 4.76566 4.86125 4.88298 4.93562 4.97370 5.08498 5.12499 5.24263 5.28074 5.29143 5.32663 5.44692 5.45975 5.53927 5.57663 5.68535 5.83557 6.09887 6.23355 6.60224 6.71905 7.11065 7.35322 7.35867 7.47334 8.86372 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029374 B = 0.002729 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.994954 B =10257.488761 C =10439.789038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.146 3.854 3 C -0.162 4.162 4 N -0.711 5.711 5 C 0.689 3.311 6 O -0.591 6.591 7 N -0.670 5.670 8 C 0.523 3.477 9 O -0.503 6.503 10 C 0.054 3.946 11 H 0.098 0.902 12 C -0.135 4.135 13 N -0.506 5.506 14 C 0.044 3.956 15 C -0.111 4.111 16 C 0.233 3.767 17 O -0.596 6.596 18 C -0.554 4.554 19 H 0.064 0.936 20 C 0.023 3.977 21 N -0.915 5.915 22 Si 0.964 3.036 23 H -0.264 1.264 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.066 3.934 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.025 0.975 34 H 0.419 0.581 35 H 0.433 0.567 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.029 0.971 42 H 0.048 0.952 43 H 0.372 0.628 44 H 0.267 0.733 45 H 0.079 0.921 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.203 8.828 0.267 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.041 3.959 3 C -0.220 4.220 4 N -0.370 5.370 5 C 0.389 3.611 6 O -0.467 6.467 7 N -0.339 5.339 8 C 0.309 3.691 9 O -0.372 6.372 10 C -0.059 4.059 11 H 0.115 0.885 12 C -0.193 4.193 13 N -0.232 5.232 14 C -0.084 4.084 15 C -0.150 4.150 16 C 0.194 3.806 17 O -0.404 6.404 18 C -0.593 4.593 19 H 0.082 0.918 20 C -0.178 4.178 21 N -0.555 5.555 22 Si 0.789 3.211 23 H -0.188 1.188 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.061 4.061 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.257 0.743 35 H 0.273 0.727 36 H 0.097 0.903 37 H 0.126 0.874 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.221 0.779 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.707 8.395 -1.672 27.095 hybrid contribution 1.518 0.859 1.560 2.340 sum -24.189 9.254 -0.112 25.899 Atomic orbital electron populations 1.22019 0.90605 1.03462 1.04552 1.21000 0.96069 0.92224 0.86572 1.22188 1.00065 0.96070 1.03717 1.45251 1.15116 1.57861 1.18781 1.16460 0.83013 0.78649 0.82967 1.91050 1.57841 1.63511 1.34265 1.43872 1.18835 1.53940 1.17210 1.21195 0.80306 0.77413 0.90162 1.90806 1.55496 1.54994 1.35936 1.22023 0.92043 0.98553 0.93233 0.88452 1.21838 0.98493 0.96128 1.02807 1.65368 1.00286 1.25919 1.31586 1.23038 0.92597 0.92379 1.00363 1.22663 0.94513 0.99636 0.98195 1.19557 0.90498 0.80486 0.90088 1.86122 1.30509 1.37629 1.86105 1.21987 0.92609 1.49359 0.95314 0.91817 1.25795 0.98494 0.93947 0.99523 1.69845 1.08215 1.50061 1.27397 0.85427 0.78384 0.77519 0.79768 1.18800 1.20720 1.20797 1.23003 0.93647 0.99513 0.89956 0.89971 0.89690 0.91533 0.92151 0.90051 0.90627 0.95550 0.74327 0.72715 0.90270 0.87354 0.92754 0.94282 0.91317 0.95257 0.93279 0.77929 0.92331 0.90254 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.38 71.98 0.68 -0.19 16 2 C 0.15 2.05 3.18 44.99 0.14 2.20 16 3 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 4 N -0.71 -10.00 5.08 -457.87 -2.33 -12.32 16 5 C 0.69 17.40 8.47 179.05 1.52 18.91 16 6 O -0.59 -22.94 14.41 18.92 0.27 -22.66 16 7 N -0.67 -13.72 5.13 -440.52 -2.26 -15.98 16 8 C 0.52 16.22 6.83 87.66 0.60 16.81 16 9 O -0.50 -22.11 12.46 19.86 0.25 -21.86 16 10 C 0.05 1.49 2.26 44.17 0.10 1.59 16 11 H 0.10 2.22 7.98 -2.39 -0.02 2.20 16 12 C -0.14 -2.68 9.06 71.98 0.65 -2.03 16 13 N -0.51 -20.12 5.00 -859.90 -4.30 -24.42 16 14 C 0.04 1.95 5.50 86.45 0.48 2.43 16 15 C -0.11 -5.71 5.55 31.49 0.17 -5.53 16 16 C 0.23 12.01 1.05 -10.65 -0.01 12.00 16 17 O -0.60 -33.16 12.94 -148.98 -1.93 -35.09 16 18 C -0.55 -29.65 8.08 25.60 0.21 -29.44 16 19 H 0.06 3.28 7.58 -2.91 -0.02 3.26 16 20 C 0.02 1.20 5.02 84.65 0.43 1.63 16 21 N -0.92 -50.95 10.82 21.45 0.23 -50.71 16 22 Si 0.96 42.27 29.54 68.60 2.03 44.29 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 26 C 0.07 2.75 4.82 86.39 0.42 3.16 16 27 H 0.08 0.19 8.14 -2.38 -0.02 0.17 16 28 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 1.24 7.58 -2.39 -0.02 1.22 16 31 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.42 2.09 8.62 -92.71 -0.80 1.29 16 35 H 0.43 3.66 8.13 -92.71 -0.75 2.91 16 36 H 0.08 1.57 7.09 -2.39 -0.02 1.55 16 37 H 0.11 1.03 7.57 -2.39 -0.02 1.02 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.04 1.60 7.97 -2.39 -0.02 1.58 16 40 H 0.07 3.30 6.30 -2.39 -0.02 3.29 16 41 H 0.03 1.60 7.98 -2.39 -0.02 1.58 16 42 H 0.05 2.66 7.23 -2.39 -0.02 2.65 16 43 H 0.37 21.28 7.33 -74.06 -0.54 20.74 16 44 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.08 3.24 7.65 -2.39 -0.02 3.22 16 46 H 0.06 2.39 7.48 -2.39 -0.02 2.37 16 Total: -1.00 -82.59 367.18 -3.06 -85.65 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -1.08 Total: 33.21 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 6.06 Total: 19.90 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -8.66 Total: -103.44 kcal Atomic # 8 Polarization: -78.21 SS G_CDS: -1.41 Total: -79.62 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -82.59 -3.06 -85.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.988 kcal (2) G-P(sol) polarization free energy of solvation -82.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds