Wall clock time and date at job start Tue Mar 31 2020 04:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47101 * 304.99753 * 5 4 3 7 7 N 1.46502 * 109.47004 * 65.00083 * 5 4 3 8 8 C 1.34777 * 119.99975 * 60.00375 * 7 5 4 9 9 N 1.34776 * 119.99699 * 179.97438 * 8 7 5 10 10 O 1.21583 * 119.99909 * 359.97438 * 8 7 5 11 11 C 1.50699 * 109.47337 * 185.00170 * 5 4 3 12 12 O 1.21278 * 120.00013 * 259.99996 * 11 5 4 13 13 N 1.34779 * 120.00211 * 79.99787 * 11 5 4 14 14 C 1.47022 * 125.64793 * 359.69708 * 13 11 5 15 15 C 1.54333 * 107.26761 * 178.84862 * 14 13 11 16 16 C 1.55153 * 103.01891 * 338.13712 * 15 14 13 17 17 O 1.42903 * 111.00903 * 277.23554 * 16 15 14 18 18 C 1.50699 * 111.03907 * 153.39756 * 16 15 14 19 19 H 1.08004 * 120.00082 * 247.79203 * 18 16 15 20 20 C 1.37876 * 120.00380 * 67.78154 * 18 16 15 21 21 N 1.31514 * 119.99584 * 0.02562 * 20 18 16 22 22 Si 1.86793 * 120.00559 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47360 * 89.99883 * 22 20 18 24 24 H 1.48497 * 109.47421 * 209.99993 * 22 20 18 25 25 H 1.48504 * 109.46900 * 330.00144 * 22 20 18 26 26 C 1.47429 * 125.64912 * 179.97438 * 13 11 5 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 4 3 2 35 35 H 1.09001 * 109.47066 * 60.00169 * 4 3 2 36 36 H 0.96995 * 119.99818 * 239.99500 * 7 5 4 37 37 H 0.96995 * 120.00065 * 359.97438 * 9 8 7 38 38 H 0.97004 * 119.99743 * 179.97438 * 9 8 7 39 39 H 1.08998 * 109.87749 * 298.39219 * 14 13 11 40 40 H 1.08999 * 109.88463 * 59.55571 * 14 13 11 41 41 H 1.09001 * 110.85062 * 219.67330 * 15 14 13 42 42 H 1.08996 * 110.51791 * 96.44988 * 15 14 13 43 43 H 0.96704 * 113.99240 * 292.19626 * 17 16 15 44 44 H 0.97000 * 120.00332 * 180.02562 * 21 20 18 45 45 H 1.09000 * 110.36487 * 322.93434 * 26 13 11 46 46 H 1.08996 * 110.36133 * 85.14899 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 1 3.6449 3.4238 -0.8431 7 7 3.6928 3.5404 1.2505 8 6 4.1179 3.0453 2.4298 9 7 3.7623 3.6485 3.5813 10 8 4.8223 2.0546 2.4547 11 6 5.5817 2.8869 -0.1258 12 8 6.2717 3.0402 0.8597 13 7 6.1581 2.7182 -1.3324 14 6 5.4449 2.5166 -2.6021 15 6 6.5103 2.4009 -3.7127 16 6 7.7453 3.1007 -3.0864 17 8 7.6652 4.5188 -3.2438 18 6 9.0259 2.5664 -3.6745 19 1 9.7012 1.9876 -3.0618 20 6 9.3353 2.8162 -4.9946 21 7 8.5130 3.5213 -5.7406 22 14 10.9221 2.1534 -5.7237 23 1 10.6791 0.8042 -6.2946 24 1 11.3939 3.0666 -6.7955 25 1 11.9551 2.0623 -4.6607 26 6 7.6084 2.6994 -1.5967 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.9336 0.9286 0.8891 35 1 3.9329 0.9289 -0.8909 36 1 3.1307 4.3306 1.2306 37 1 3.2007 4.4391 3.5614 38 1 4.0679 3.2920 4.4301 39 1 4.8552 1.6011 -2.5546 40 1 4.7951 3.3686 -2.8016 41 1 6.1884 2.9213 -4.6148 42 1 6.7272 1.3544 -3.9265 43 1 7.7459 4.8179 -4.1599 44 1 8.7304 3.6968 -6.6695 45 1 8.1193 3.4221 -0.9605 46 1 8.0108 1.6997 -1.4331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:25 Heat of formation + Delta-G solvation = -125.646184 kcal Electronic energy + Delta-G solvation = -27712.141145 eV Core-core repulsion = 23829.379786 eV Total energy + Delta-G solvation = -3882.761359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.39231 -38.84466 -37.09573 -36.11566 -34.23529 -34.11062 -33.41401 -32.13013 -30.66052 -29.64882 -28.34929 -26.78578 -24.85130 -22.96553 -22.25211 -21.41640 -20.58575 -19.64753 -18.72796 -18.47038 -17.21502 -17.11901 -16.37181 -15.80468 -15.21740 -15.02195 -14.96678 -14.51870 -14.28245 -14.16875 -13.97442 -13.77479 -13.48130 -13.05340 -12.85837 -12.71226 -12.29587 -11.95834 -11.84675 -11.53897 -11.37877 -11.29445 -11.26608 -11.11165 -10.92320 -10.85629 -10.67975 -10.55520 -10.47788 -10.01943 -9.90132 -9.55818 -9.46112 -9.39597 -8.71528 -8.56694 -8.19483 -7.85343 -6.29516 -4.36665 2.85012 3.20100 3.25940 3.27712 3.32379 3.46512 3.75382 4.27206 4.53226 4.67893 4.85742 4.89512 4.97909 5.08113 5.12749 5.26942 5.35076 5.57752 5.62257 5.66647 5.74759 5.77898 5.85166 5.90397 5.96063 6.02909 6.12373 6.20201 6.27880 6.39980 6.48742 6.55532 6.73446 6.75650 6.91853 7.00597 7.04767 7.31667 7.34643 7.74454 8.01508 8.07486 8.25116 8.65363 8.77629 8.92755 9.32262 9.48800 10.78194 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.003539 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.382270 B = 7910.987899 C = 8837.392303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.111 4.111 4 C -0.135 4.135 5 C 0.159 3.841 6 H 0.105 0.895 7 N -0.732 5.732 8 C 0.710 3.290 9 N -0.874 5.874 10 O -0.562 6.562 11 C 0.510 3.490 12 O -0.521 6.521 13 N -0.609 5.609 14 C 0.099 3.901 15 C -0.139 4.139 16 C 0.249 3.751 17 O -0.584 6.584 18 C -0.534 4.534 19 H 0.065 0.935 20 C 0.072 3.928 21 N -0.899 5.899 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.123 3.877 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.396 0.604 37 H 0.391 0.609 38 H 0.411 0.589 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.385 0.615 44 H 0.269 0.731 45 H 0.068 0.932 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.082 -0.776 8.978 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.173 4.173 5 C 0.049 3.951 6 H 0.123 0.877 7 N -0.389 5.389 8 C 0.409 3.591 9 N -0.442 5.442 10 O -0.436 6.436 11 C 0.296 3.704 12 O -0.396 6.396 13 N -0.343 5.343 14 C -0.024 4.024 15 C -0.177 4.177 16 C 0.209 3.791 17 O -0.395 6.395 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.130 4.130 21 N -0.539 5.539 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C 0.001 3.999 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.230 0.770 37 H 0.218 0.782 38 H 0.243 0.757 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.237 0.763 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.219 -1.510 9.900 19.062 hybrid contribution 0.428 0.382 -0.932 1.095 sum -15.791 -1.127 8.969 18.195 Atomic orbital electron populations 1.21763 0.96068 1.01399 1.01576 1.21518 0.95531 0.97007 1.02229 1.21538 0.94741 0.96828 1.01746 1.21995 0.95687 0.94763 1.04881 1.20667 0.92699 0.95740 0.85990 0.87722 1.44689 1.56541 1.33275 1.04346 1.15832 0.79553 0.83259 0.80489 1.42970 1.59075 1.34404 1.07765 1.90965 1.39836 1.27036 1.85775 1.20356 0.90109 0.77774 0.82205 1.90715 1.64324 1.48698 1.35882 1.48570 1.08771 1.70744 1.06258 1.22182 0.96282 0.99064 0.84897 1.23190 0.96017 1.01943 0.96578 1.19571 0.91900 0.79617 0.88062 1.86103 1.96105 1.22954 1.34302 1.21506 1.05447 1.34228 0.96058 0.91658 1.24984 0.97138 0.94248 0.96640 1.69559 1.36585 1.39422 1.08307 0.86398 0.83017 0.78697 0.78775 1.20447 1.21032 1.19669 1.22319 0.79223 1.00448 0.97920 0.92776 0.92952 0.93013 0.92069 0.91871 0.92095 0.92124 0.88784 0.90602 0.77042 0.78203 0.75711 0.92834 0.92610 0.89923 0.91415 0.76334 0.92117 0.91375 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.19 5.93 -26.73 -0.16 -1.35 16 3 C -0.11 -1.10 5.10 -26.74 -0.14 -1.24 16 4 C -0.13 -1.77 4.53 -26.74 -0.12 -1.89 16 5 C 0.16 2.25 2.43 -69.08 -0.17 2.08 16 6 H 0.10 1.23 7.46 -51.93 -0.39 0.84 16 7 N -0.73 -9.00 4.66 -59.81 -0.28 -9.28 16 8 C 0.71 10.40 7.59 -86.92 -0.66 9.74 16 9 N -0.87 -8.43 8.88 27.63 0.25 -8.19 16 10 O -0.56 -11.12 13.03 -18.19 -0.24 -11.36 16 11 C 0.51 10.07 6.84 -10.99 -0.08 9.99 16 12 O -0.52 -12.38 13.93 -17.93 -0.25 -12.63 16 13 N -0.61 -12.30 3.33 -170.53 -0.57 -12.86 16 14 C 0.10 1.75 6.20 -3.06 -0.02 1.73 16 15 C -0.14 -2.93 5.64 -24.89 -0.14 -3.07 16 16 C 0.25 6.05 0.89 -89.63 -0.08 5.97 16 17 O -0.58 -15.01 13.18 -35.23 -0.46 -15.47 16 18 C -0.53 -13.98 8.25 -34.44 -0.28 -14.26 16 19 H 0.07 1.71 7.77 -52.48 -0.41 1.31 16 20 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 21 N -0.90 -22.98 10.79 55.43 0.60 -22.38 16 22 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.12 2.84 6.08 -2.54 -0.02 2.83 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 34 H 0.09 1.53 6.04 -51.93 -0.31 1.22 16 35 H 0.08 1.00 6.64 -51.93 -0.34 0.66 16 36 H 0.40 3.34 8.84 -40.82 -0.36 2.98 16 37 H 0.39 2.35 8.84 -40.82 -0.36 1.98 16 38 H 0.41 3.66 8.93 -40.82 -0.36 3.29 16 39 H 0.05 0.81 6.74 -51.93 -0.35 0.46 16 40 H 0.06 0.90 7.84 -51.93 -0.41 0.50 16 41 H 0.08 1.81 7.85 -51.93 -0.41 1.40 16 42 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 43 H 0.38 9.93 6.93 45.56 0.32 10.24 16 44 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 45 H 0.07 1.70 8.04 -51.93 -0.42 1.28 16 46 H 0.07 1.56 8.02 -51.93 -0.42 1.15 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -33.54 366.22 -8.75 -42.30 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -6.71 Total: 17.73 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -1.58 Total: 11.44 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.00 Total: -52.71 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.95 Total: -39.47 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.54 -8.75 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.350 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds