Wall clock time and date at job start Tue Mar 31 2020 04:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47101 * 304.99753 * 5 4 3 7 7 N 1.46502 * 109.47004 * 65.00083 * 5 4 3 8 8 C 1.34777 * 119.99975 * 60.00375 * 7 5 4 9 9 N 1.34776 * 119.99699 * 179.97438 * 8 7 5 10 10 O 1.21583 * 119.99909 * 359.97438 * 8 7 5 11 11 C 1.50699 * 109.47337 * 185.00170 * 5 4 3 12 12 O 1.21278 * 120.00013 * 259.99996 * 11 5 4 13 13 N 1.34779 * 120.00211 * 79.99787 * 11 5 4 14 14 C 1.47022 * 125.64793 * 359.69708 * 13 11 5 15 15 C 1.54333 * 107.26761 * 178.84862 * 14 13 11 16 16 C 1.55153 * 103.01891 * 338.13712 * 15 14 13 17 17 O 1.42903 * 111.00903 * 277.23554 * 16 15 14 18 18 C 1.50699 * 111.03907 * 153.39756 * 16 15 14 19 19 H 1.08004 * 120.00082 * 247.79203 * 18 16 15 20 20 C 1.37876 * 120.00380 * 67.78154 * 18 16 15 21 21 N 1.31514 * 119.99584 * 0.02562 * 20 18 16 22 22 Si 1.86793 * 120.00559 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47360 * 89.99883 * 22 20 18 24 24 H 1.48497 * 109.47421 * 209.99993 * 22 20 18 25 25 H 1.48504 * 109.46900 * 330.00144 * 22 20 18 26 26 C 1.47429 * 125.64912 * 179.97438 * 13 11 5 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 4 3 2 35 35 H 1.09001 * 109.47066 * 60.00169 * 4 3 2 36 36 H 0.96995 * 119.99818 * 239.99500 * 7 5 4 37 37 H 0.96995 * 120.00065 * 359.97438 * 9 8 7 38 38 H 0.97004 * 119.99743 * 179.97438 * 9 8 7 39 39 H 1.08998 * 109.87749 * 298.39219 * 14 13 11 40 40 H 1.08999 * 109.88463 * 59.55571 * 14 13 11 41 41 H 1.09001 * 110.85062 * 219.67330 * 15 14 13 42 42 H 1.08996 * 110.51791 * 96.44988 * 15 14 13 43 43 H 0.96704 * 113.99240 * 292.19626 * 17 16 15 44 44 H 0.97000 * 120.00332 * 180.02562 * 21 20 18 45 45 H 1.09000 * 110.36487 * 322.93434 * 26 13 11 46 46 H 1.08996 * 110.36133 * 85.14899 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 1 3.6449 3.4238 -0.8431 7 7 3.6928 3.5404 1.2505 8 6 4.1179 3.0453 2.4298 9 7 3.7623 3.6485 3.5813 10 8 4.8223 2.0546 2.4547 11 6 5.5817 2.8869 -0.1258 12 8 6.2717 3.0402 0.8597 13 7 6.1581 2.7182 -1.3324 14 6 5.4449 2.5166 -2.6021 15 6 6.5103 2.4009 -3.7127 16 6 7.7453 3.1007 -3.0864 17 8 7.6652 4.5188 -3.2438 18 6 9.0259 2.5664 -3.6745 19 1 9.7012 1.9876 -3.0618 20 6 9.3353 2.8162 -4.9946 21 7 8.5130 3.5213 -5.7406 22 14 10.9221 2.1534 -5.7237 23 1 10.6791 0.8042 -6.2946 24 1 11.3939 3.0666 -6.7955 25 1 11.9551 2.0623 -4.6607 26 6 7.6084 2.6994 -1.5967 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.9336 0.9286 0.8891 35 1 3.9329 0.9289 -0.8909 36 1 3.1307 4.3306 1.2306 37 1 3.2007 4.4391 3.5614 38 1 4.0679 3.2920 4.4301 39 1 4.8552 1.6011 -2.5546 40 1 4.7951 3.3686 -2.8016 41 1 6.1884 2.9213 -4.6148 42 1 6.7272 1.3544 -3.9265 43 1 7.7459 4.8179 -4.1599 44 1 8.7304 3.6968 -6.6695 45 1 8.1193 3.4221 -0.9605 46 1 8.0108 1.6997 -1.4331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:25 Heat of formation + Delta-G solvation = -152.687347 kcal Electronic energy + Delta-G solvation = -27713.313737 eV Core-core repulsion = 23829.379786 eV Total energy + Delta-G solvation = -3883.933952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68198 -40.30806 -38.74161 -37.14680 -36.04414 -35.16970 -34.39012 -34.13108 -31.89701 -31.06214 -30.01803 -28.06288 -26.52485 -24.18605 -23.53050 -22.43051 -21.70237 -21.36114 -20.12972 -19.60152 -19.09772 -18.22380 -17.78639 -16.98778 -16.83036 -16.57353 -16.29594 -16.02745 -15.61298 -15.40241 -15.25233 -14.95951 -14.71627 -14.46791 -14.24370 -13.79467 -13.66250 -13.54795 -13.40347 -13.19828 -13.03440 -12.72584 -12.57609 -12.48271 -12.28040 -12.16519 -11.98820 -11.82875 -11.73905 -11.43060 -11.29822 -11.21060 -10.81543 -10.64853 -10.45121 -10.14435 -9.86131 -9.48207 -8.25359 -6.39382 1.41643 1.44846 1.53721 1.64594 1.86747 2.21842 2.39623 2.49674 2.99491 3.51834 3.69022 3.82346 3.89803 3.98704 4.06894 4.17910 4.22770 4.36182 4.40712 4.46376 4.56779 4.60790 4.71352 4.85710 4.89538 4.92135 5.03509 5.06628 5.19617 5.25244 5.31088 5.36210 5.41269 5.46361 5.53093 5.54787 5.55440 5.77998 5.98474 6.07015 6.12693 6.62384 6.71494 7.21941 7.27363 7.31948 7.47404 7.86879 8.80967 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.003539 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.382270 B = 7910.987899 C = 8837.392303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.101 4.101 4 C -0.127 4.127 5 C 0.168 3.832 6 H 0.142 0.858 7 N -0.719 5.719 8 C 0.701 3.299 9 N -0.853 5.853 10 O -0.618 6.618 11 C 0.499 3.501 12 O -0.569 6.569 13 N -0.612 5.612 14 C 0.104 3.896 15 C -0.129 4.129 16 C 0.238 3.762 17 O -0.594 6.594 18 C -0.565 4.565 19 H 0.051 0.949 20 C 0.038 3.962 21 N -0.907 5.907 22 Si 0.960 3.040 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.279 1.279 26 C 0.127 3.873 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.418 0.582 37 H 0.412 0.588 38 H 0.416 0.584 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.382 0.618 44 H 0.273 0.727 45 H 0.037 0.963 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.706 -0.383 8.153 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.138 4.138 4 C -0.166 4.166 5 C 0.058 3.942 6 H 0.160 0.840 7 N -0.377 5.377 8 C 0.399 3.601 9 N -0.422 5.422 10 O -0.497 6.497 11 C 0.288 3.712 12 O -0.447 6.447 13 N -0.346 5.346 14 C -0.017 4.017 15 C -0.168 4.168 16 C 0.197 3.803 17 O -0.404 6.404 18 C -0.603 4.603 19 H 0.069 0.931 20 C -0.163 4.163 21 N -0.547 5.547 22 Si 0.785 3.215 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.205 1.205 26 C 0.004 3.996 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.255 0.745 37 H 0.242 0.758 38 H 0.249 0.751 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.233 0.767 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.923 -1.059 9.081 21.016 hybrid contribution 1.294 0.290 -0.626 1.467 sum -17.628 -0.770 8.455 19.566 Atomic orbital electron populations 1.21731 0.94602 1.01891 1.02225 1.21519 0.96778 0.96654 1.01502 1.21484 0.91910 0.97362 1.03059 1.21913 0.98005 0.93492 1.03149 1.20718 0.88369 0.97271 0.87889 0.84024 1.44521 1.56222 1.33791 1.03206 1.16179 0.79196 0.82894 0.81841 1.42737 1.58401 1.34510 1.06596 1.90940 1.42406 1.29638 1.86716 1.21523 0.92511 0.76174 0.81037 1.90691 1.66008 1.50650 1.37346 1.48670 1.07424 1.70844 1.07617 1.22279 0.95286 1.01947 0.82216 1.22976 0.95573 1.00899 0.97329 1.19704 0.92825 0.79049 0.88698 1.86086 1.96207 1.24052 1.34075 1.21709 1.06624 1.35208 0.96734 0.93062 1.25570 0.99651 0.94361 0.96693 1.69603 1.37334 1.39195 1.08521 0.85535 0.79606 0.78510 0.77814 1.19630 1.20319 1.20462 1.22039 0.81585 0.99035 0.96961 0.91777 0.92645 0.92664 0.93651 0.91905 0.89713 0.91718 0.92279 0.90679 0.74461 0.75776 0.75150 0.89332 0.90010 0.90575 0.91961 0.76701 0.91706 0.94416 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.13 -2.14 5.93 30.59 0.18 -1.96 16 3 C -0.10 -1.69 5.10 30.59 0.16 -1.53 16 4 C -0.13 -3.11 4.53 30.59 0.14 -2.97 16 5 C 0.17 4.36 2.43 44.24 0.11 4.47 16 6 H 0.14 2.67 7.46 -2.39 -0.02 2.65 16 7 N -0.72 -16.14 4.66 -461.42 -2.15 -18.29 16 8 C 0.70 19.94 7.59 179.05 1.36 21.30 16 9 N -0.85 -15.16 8.88 -184.75 -1.64 -16.80 16 10 O -0.62 -25.01 13.03 18.48 0.24 -24.77 16 11 C 0.50 19.55 6.84 87.66 0.60 20.15 16 12 O -0.57 -27.76 13.93 19.43 0.27 -27.49 16 13 N -0.61 -24.45 3.33 -811.81 -2.70 -27.15 16 14 C 0.10 3.45 6.20 86.73 0.54 3.98 16 15 C -0.13 -5.36 5.64 31.78 0.18 -5.18 16 16 C 0.24 11.70 0.89 -10.16 -0.01 11.69 16 17 O -0.59 -30.88 13.18 -148.98 -1.96 -32.84 16 18 C -0.56 -30.19 8.25 25.60 0.21 -29.98 16 19 H 0.05 2.80 7.77 -2.91 -0.02 2.77 16 20 C 0.04 1.97 5.30 84.65 0.45 2.42 16 21 N -0.91 -45.98 10.79 21.45 0.23 -45.75 16 22 Si 0.96 41.41 29.54 68.60 2.03 43.44 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 C 0.13 6.09 6.08 86.85 0.53 6.62 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.05 7.75 -2.39 -0.02 1.03 16 34 H 0.06 1.93 6.04 -2.39 -0.01 1.91 16 35 H 0.07 1.82 6.64 -2.39 -0.02 1.81 16 36 H 0.42 5.61 8.84 -92.71 -0.82 4.79 16 37 H 0.41 3.88 8.84 -92.71 -0.82 3.06 16 38 H 0.42 6.96 8.93 -92.70 -0.83 6.13 16 39 H 0.09 2.35 6.74 -2.39 -0.02 2.34 16 40 H 0.08 2.32 7.84 -2.39 -0.02 2.30 16 41 H 0.08 3.25 7.85 -2.39 -0.02 3.23 16 42 H 0.06 2.61 8.03 -2.39 -0.02 2.59 16 43 H 0.38 19.87 6.93 -74.05 -0.51 19.35 16 44 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 45 H 0.04 1.99 8.04 -2.39 -0.02 1.97 16 46 H 0.06 2.94 8.02 -2.39 -0.02 2.92 16 Total: -1.00 -76.27 366.22 -2.48 -78.75 By element: Atomic # 1 Polarization: 45.04 SS G_CDS: -1.95 Total: 43.09 kcal Atomic # 6 Polarization: 22.64 SS G_CDS: 5.15 Total: 27.79 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -6.26 Total: -107.98 kcal Atomic # 8 Polarization: -83.64 SS G_CDS: -1.45 Total: -85.09 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -76.27 -2.48 -78.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.934 kcal (2) G-P(sol) polarization free energy of solvation -76.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds