Wall clock time and date at job start Tue Mar 31 2020 04:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47307 * 2 1 4 4 C 1.42899 * 113.99886 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47055 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47074 * 64.99781 * 5 4 3 7 7 C 1.34779 * 120.00154 * 179.97438 * 6 5 4 8 8 O 1.21348 * 119.99768 * 0.02562 * 7 6 5 9 9 C 1.49450 * 120.00032 * 180.02562 * 7 6 5 10 10 O 1.21356 * 119.99981 * 353.51350 * 9 7 6 11 11 N 1.34774 * 120.00149 * 173.78998 * 9 7 6 12 12 C 1.47074 * 120.88489 * 180.82986 * 11 9 7 13 13 C 1.53700 * 108.27666 * 128.75482 * 12 11 9 14 14 N 1.46902 * 109.25471 * 54.08571 * 13 12 11 15 15 C 1.46896 * 110.99756 * 172.60834 * 14 13 12 16 16 C 1.50697 * 109.47435 * 294.29945 * 15 14 13 17 17 H 1.08007 * 119.99537 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00581 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99549 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47231 * 89.99962 * 20 18 16 22 22 H 1.48509 * 109.46798 * 209.99505 * 20 18 16 23 23 H 1.48496 * 109.47221 * 329.99568 * 20 18 16 24 24 C 1.46893 * 111.26804 * 296.75687 * 14 13 12 25 25 C 1.47082 * 120.87694 * 1.11057 * 11 9 7 26 26 H 1.09001 * 109.46979 * 60.00241 * 1 2 3 27 27 H 1.09001 * 109.47085 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46997 * 300.00367 * 1 2 3 29 29 H 1.08997 * 109.46997 * 239.99633 * 2 1 3 30 30 H 1.09001 * 109.46979 * 119.99759 * 2 1 3 31 31 H 1.09000 * 109.47651 * 60.00067 * 4 3 2 32 32 H 1.08997 * 109.47471 * 299.99368 * 4 3 2 33 33 H 1.09003 * 109.47166 * 305.00465 * 5 4 3 34 34 H 1.09001 * 109.47490 * 184.99886 * 5 4 3 35 35 H 0.97003 * 119.99969 * 0.02562 * 6 5 4 36 36 H 1.08996 * 109.63545 * 248.52272 * 12 11 9 37 37 H 1.09000 * 109.62802 * 9.11122 * 12 11 9 38 38 H 1.09001 * 109.64614 * 294.08434 * 13 12 11 39 39 H 1.09001 * 109.41940 * 173.95105 * 13 12 11 40 40 H 1.09000 * 109.47800 * 54.30221 * 15 14 13 41 41 H 1.09008 * 109.46958 * 174.30245 * 15 14 13 42 42 H 0.97005 * 119.99532 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.49533 * 303.14448 * 24 14 13 44 44 H 1.08999 * 109.49656 * 183.06504 * 24 14 13 45 45 H 1.08992 * 109.62979 * 350.89963 * 25 11 9 46 46 H 1.09003 * 109.62769 * 111.48017 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 7 3.3879 3.5610 1.2506 7 6 3.6296 4.8680 1.4736 8 8 4.2093 5.5291 0.6372 9 6 3.1837 5.5031 2.7508 10 8 2.5025 4.8756 3.5350 11 7 3.5333 6.7746 3.0292 12 6 3.1204 7.4127 4.2883 13 6 4.3670 8.0177 4.9535 14 7 5.0418 8.9074 3.9991 15 6 6.1370 9.6411 4.6472 16 6 5.5705 10.5778 5.6829 17 1 4.5034 10.6232 5.8438 18 6 6.4141 11.3769 6.4250 19 7 7.7134 11.3212 6.2294 20 14 5.7117 12.5374 7.7092 21 1 5.6291 11.8377 9.0164 22 1 6.5939 13.7250 7.8385 23 1 4.3539 12.9722 7.2938 24 6 5.5265 8.1639 2.8286 25 6 4.3327 7.5629 2.0790 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8334 0.9766 -0.8908 32 1 3.8341 0.9764 0.8892 33 1 3.3493 3.4411 -0.8429 34 1 4.9083 3.0253 -0.0912 35 1 2.9249 3.0324 1.9193 36 1 2.3950 8.1991 4.0798 37 1 2.6770 6.6672 4.9484 38 1 5.0475 7.2197 5.2506 39 1 4.0679 8.5876 5.8332 40 1 6.8135 8.9344 5.1279 41 1 6.6831 10.2149 3.8984 42 1 8.3070 11.8831 6.7517 43 1 6.1910 7.3639 3.1553 44 1 6.0684 8.8399 2.1671 45 1 4.6910 6.9168 1.2777 46 1 3.7216 8.3634 1.6621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602232198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:32 Heat of formation + Delta-G solvation = -89.080594 kcal Electronic energy + Delta-G solvation = -26232.199706 eV Core-core repulsion = 22351.023950 eV Total energy + Delta-G solvation = -3881.175756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.89896 -39.03358 -38.35931 -37.55851 -35.49643 -34.21297 -32.37309 -31.94582 -30.72478 -29.58667 -28.39971 -25.89662 -24.63627 -23.25041 -23.22424 -22.52908 -21.67179 -20.73959 -19.39498 -17.62143 -17.40194 -17.13413 -16.56220 -16.32195 -16.01838 -15.72007 -15.22073 -14.76198 -14.66828 -14.43731 -14.32319 -14.10327 -13.74935 -13.67125 -13.45791 -13.27481 -12.80676 -12.65424 -12.35390 -12.17099 -12.00654 -11.81229 -11.54928 -11.40672 -11.23735 -10.94398 -10.78429 -10.71249 -10.57383 -10.53541 -10.13958 -9.88600 -9.51936 -9.34082 -8.93788 -8.55799 -8.43577 -7.28635 -6.04074 -4.05833 1.40552 2.29363 3.10346 3.21304 3.31466 3.37832 3.42048 3.50444 4.27573 4.38724 4.41576 4.56823 4.66139 4.74177 4.86749 4.90651 4.91375 5.05903 5.31176 5.32664 5.36261 5.39639 5.47187 5.48010 5.63583 5.70496 5.71414 5.82509 5.87584 5.96733 6.32402 6.38451 6.46016 6.53721 6.61545 6.67174 6.93352 7.25555 7.30754 7.39880 7.71109 7.77277 7.99591 8.04878 8.15396 8.51026 9.01417 9.58572 11.06691 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.036067 B = 0.002259 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.143303 B =12393.631039 C =12854.689010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.049 3.951 5 C 0.120 3.880 6 N -0.696 5.696 7 C 0.513 3.487 8 O -0.509 6.509 9 C 0.502 3.498 10 O -0.535 6.535 11 N -0.569 5.569 12 C 0.110 3.890 13 C 0.052 3.948 14 N -0.537 5.537 15 C 0.193 3.807 16 C -0.509 4.509 17 H 0.064 0.936 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.042 3.958 25 C 0.059 3.941 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.416 0.584 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.025 0.975 39 H 0.099 0.901 40 H -0.009 1.009 41 H 0.032 0.968 42 H 0.261 0.739 43 H 0.024 0.976 44 H 0.082 0.918 45 H 0.149 0.851 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 -22.454 -13.574 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.306 6.306 4 C -0.028 4.028 5 C -0.004 4.004 6 N -0.349 5.349 7 C 0.295 3.705 8 O -0.387 6.387 9 C 0.284 3.716 10 O -0.413 6.413 11 N -0.301 5.301 12 C -0.012 4.012 13 C -0.077 4.077 14 N -0.263 5.263 15 C 0.068 3.932 16 C -0.548 4.548 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.087 4.087 25 C -0.062 4.062 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.252 0.748 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.043 0.957 39 H 0.117 0.883 40 H 0.009 0.991 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.100 0.900 45 H 0.165 0.835 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.912 -21.725 -13.867 27.614 hybrid contribution 0.421 -0.276 1.354 1.445 sum -9.491 -22.000 -12.512 27.031 Atomic orbital electron populations 1.21754 0.93540 1.02325 1.03413 1.22488 0.95848 0.83423 1.00150 1.87958 1.20396 1.26813 1.95467 1.22770 0.82322 0.96055 1.01691 1.21528 1.00522 0.91338 0.86974 1.45708 1.58629 1.09711 1.20880 1.20340 0.79631 0.82705 0.87849 1.90375 1.41093 1.60573 1.46628 1.19864 0.81989 0.82868 0.86868 1.90732 1.38629 1.62650 1.49321 1.48180 1.50408 1.10964 1.20557 1.22149 0.97954 0.96928 0.84158 1.22411 0.94007 0.94912 0.96346 1.62112 1.31416 1.25226 1.07517 1.19730 0.87396 0.92255 0.93815 1.21151 0.93667 1.21449 1.18488 0.91798 1.25000 0.94802 0.97310 0.97527 1.69962 1.02376 1.40225 1.41163 0.86489 0.78988 0.80337 0.81550 1.20752 1.21271 1.19741 1.22416 0.95202 0.96548 0.94570 1.23380 0.92728 0.96964 0.93106 0.91794 0.91049 0.91609 0.93311 0.93212 0.91205 0.92233 0.89855 0.89160 0.74759 0.90244 0.89188 0.95695 0.88319 0.99145 0.94974 0.92909 0.95778 0.89976 0.83521 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.06 0.33 6.66 37.16 0.25 0.58 16 3 O -0.39 -3.10 10.29 -35.23 -0.36 -3.46 16 4 C 0.05 0.29 6.07 37.16 0.23 0.51 16 5 C 0.12 0.92 6.06 -4.04 -0.02 0.90 16 6 N -0.70 -7.21 5.49 -60.73 -0.33 -7.54 16 7 C 0.51 6.88 7.81 -11.58 -0.09 6.79 16 8 O -0.51 -7.43 13.03 5.50 0.07 -7.36 16 9 C 0.50 7.81 7.77 -11.59 -0.09 7.72 16 10 O -0.54 -9.04 15.95 5.49 0.09 -8.96 16 11 N -0.57 -9.28 3.00 -172.69 -0.52 -9.80 16 12 C 0.11 1.83 6.62 -3.37 -0.02 1.81 16 13 C 0.05 1.02 5.47 -3.46 -0.02 1.01 16 14 N -0.54 -11.59 4.62 -235.47 -1.09 -12.68 16 15 C 0.19 5.01 4.72 -4.98 -0.02 4.99 16 16 C -0.51 -14.15 8.41 -34.44 -0.29 -14.44 16 17 H 0.06 1.74 7.13 -52.48 -0.37 1.37 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 20 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 25 C 0.06 0.95 6.35 -3.60 -0.02 0.93 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.42 4.12 7.96 -40.82 -0.32 3.79 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.43 7.07 -51.93 -0.37 1.07 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 2.03 6.67 -51.93 -0.35 1.68 16 40 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 41 H 0.03 0.89 7.97 -51.92 -0.41 0.47 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.08 1.47 7.99 -51.93 -0.41 1.05 16 45 H 0.15 2.27 3.93 -56.51 -0.22 2.05 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -32.41 374.82 -8.14 -40.55 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.52 Total: 0.41 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 0.15 Total: 12.55 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -1.20 Total: -55.90 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.20 Total: -19.78 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.41 -8.14 -40.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602232198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.533 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds