Wall clock time and date at job start Tue Mar 31 2020 04:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47307 * 2 1 4 4 C 1.42899 * 113.99886 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47055 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47074 * 64.99781 * 5 4 3 7 7 C 1.34779 * 120.00154 * 179.97438 * 6 5 4 8 8 O 1.21348 * 119.99768 * 0.02562 * 7 6 5 9 9 C 1.49450 * 120.00032 * 180.02562 * 7 6 5 10 10 O 1.21356 * 119.99981 * 353.51350 * 9 7 6 11 11 N 1.34774 * 120.00149 * 173.78998 * 9 7 6 12 12 C 1.47074 * 120.88489 * 180.82986 * 11 9 7 13 13 C 1.53700 * 108.27666 * 128.75482 * 12 11 9 14 14 N 1.46902 * 109.25471 * 54.08571 * 13 12 11 15 15 C 1.46896 * 110.99756 * 172.60834 * 14 13 12 16 16 C 1.50697 * 109.47435 * 294.29945 * 15 14 13 17 17 H 1.08007 * 119.99537 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00581 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99549 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47231 * 89.99962 * 20 18 16 22 22 H 1.48509 * 109.46798 * 209.99505 * 20 18 16 23 23 H 1.48496 * 109.47221 * 329.99568 * 20 18 16 24 24 C 1.46893 * 111.26804 * 296.75687 * 14 13 12 25 25 C 1.47082 * 120.87694 * 1.11057 * 11 9 7 26 26 H 1.09001 * 109.46979 * 60.00241 * 1 2 3 27 27 H 1.09001 * 109.47085 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46997 * 300.00367 * 1 2 3 29 29 H 1.08997 * 109.46997 * 239.99633 * 2 1 3 30 30 H 1.09001 * 109.46979 * 119.99759 * 2 1 3 31 31 H 1.09000 * 109.47651 * 60.00067 * 4 3 2 32 32 H 1.08997 * 109.47471 * 299.99368 * 4 3 2 33 33 H 1.09003 * 109.47166 * 305.00465 * 5 4 3 34 34 H 1.09001 * 109.47490 * 184.99886 * 5 4 3 35 35 H 0.97003 * 119.99969 * 0.02562 * 6 5 4 36 36 H 1.08996 * 109.63545 * 248.52272 * 12 11 9 37 37 H 1.09000 * 109.62802 * 9.11122 * 12 11 9 38 38 H 1.09001 * 109.64614 * 294.08434 * 13 12 11 39 39 H 1.09001 * 109.41940 * 173.95105 * 13 12 11 40 40 H 1.09000 * 109.47800 * 54.30221 * 15 14 13 41 41 H 1.09008 * 109.46958 * 174.30245 * 15 14 13 42 42 H 0.97005 * 119.99532 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.49533 * 303.14448 * 24 14 13 44 44 H 1.08999 * 109.49656 * 183.06504 * 24 14 13 45 45 H 1.08992 * 109.62979 * 350.89963 * 25 11 9 46 46 H 1.09003 * 109.62769 * 111.48017 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 7 3.3879 3.5610 1.2506 7 6 3.6296 4.8680 1.4736 8 8 4.2093 5.5291 0.6372 9 6 3.1837 5.5031 2.7508 10 8 2.5025 4.8756 3.5350 11 7 3.5333 6.7746 3.0292 12 6 3.1204 7.4127 4.2883 13 6 4.3670 8.0177 4.9535 14 7 5.0418 8.9074 3.9991 15 6 6.1370 9.6411 4.6472 16 6 5.5705 10.5778 5.6829 17 1 4.5034 10.6232 5.8438 18 6 6.4141 11.3769 6.4250 19 7 7.7134 11.3212 6.2294 20 14 5.7117 12.5374 7.7092 21 1 5.6291 11.8377 9.0164 22 1 6.5939 13.7250 7.8385 23 1 4.3539 12.9722 7.2938 24 6 5.5265 8.1639 2.8286 25 6 4.3327 7.5629 2.0790 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8334 0.9766 -0.8908 32 1 3.8341 0.9764 0.8892 33 1 3.3493 3.4411 -0.8429 34 1 4.9083 3.0253 -0.0912 35 1 2.9249 3.0324 1.9193 36 1 2.3950 8.1991 4.0798 37 1 2.6770 6.6672 4.9484 38 1 5.0475 7.2197 5.2506 39 1 4.0679 8.5876 5.8332 40 1 6.8135 8.9344 5.1279 41 1 6.6831 10.2149 3.8984 42 1 8.3070 11.8831 6.7517 43 1 6.1910 7.3639 3.1553 44 1 6.0684 8.8399 2.1671 45 1 4.6910 6.9168 1.2777 46 1 3.7216 8.3634 1.6621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602232198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:32 Heat of formation + Delta-G solvation = -114.129000 kcal Electronic energy + Delta-G solvation = -26233.285886 eV Core-core repulsion = 22351.023950 eV Total energy + Delta-G solvation = -3882.261936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.06487 -40.11181 -39.06293 -38.98407 -36.57116 -35.64044 -34.36816 -32.46409 -32.17794 -30.39971 -30.00697 -27.56724 -25.95067 -24.52540 -23.85049 -23.66498 -23.05504 -21.99365 -20.74217 -18.86787 -18.41857 -18.25883 -17.86641 -17.37385 -17.12646 -16.73999 -16.48385 -16.14122 -16.06691 -15.76619 -15.50184 -15.38440 -15.11791 -14.88576 -14.36310 -14.30033 -14.08833 -13.82971 -13.61684 -13.16550 -13.12124 -12.82546 -12.75482 -12.65861 -12.58081 -12.35364 -12.23885 -12.23045 -12.08151 -11.97792 -11.74998 -11.34828 -10.63177 -10.59072 -10.39145 -10.19066 -9.92375 -9.08414 -8.20609 -6.30839 0.25975 1.21490 1.42528 1.43696 1.55443 2.04120 2.35843 2.41895 2.68719 3.11538 3.20247 3.25453 3.85724 3.93079 4.01873 4.14493 4.20454 4.22181 4.29238 4.32914 4.40291 4.47532 4.52462 4.54542 4.56663 4.70206 4.81716 4.84291 4.90261 4.91726 4.99667 5.05825 5.10145 5.18738 5.26046 5.29041 5.41167 5.63335 5.90624 6.02414 6.14105 6.24183 6.27389 6.55659 6.61368 6.84175 6.85985 7.38867 8.90552 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.036067 B = 0.002259 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.143303 B =12393.631039 C =12854.689010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 O -0.413 6.413 4 C 0.051 3.949 5 C 0.116 3.884 6 N -0.681 5.681 7 C 0.514 3.486 8 O -0.523 6.523 9 C 0.502 3.498 10 O -0.549 6.549 11 N -0.577 5.577 12 C 0.121 3.879 13 C 0.056 3.944 14 N -0.541 5.541 15 C 0.207 3.793 16 C -0.523 4.523 17 H 0.067 0.933 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.263 1.263 24 C 0.041 3.959 25 C 0.073 3.927 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.419 0.581 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.014 0.986 39 H 0.086 0.914 40 H -0.040 1.040 41 H 0.009 0.991 42 H 0.264 0.736 43 H 0.017 0.983 44 H 0.085 0.915 45 H 0.161 0.839 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.879 -23.632 -14.104 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.334 6.334 4 C -0.026 4.026 5 C -0.006 4.006 6 N -0.333 5.333 7 C 0.296 3.704 8 O -0.402 6.402 9 C 0.285 3.715 10 O -0.428 6.428 11 N -0.309 5.309 12 C -0.001 4.001 13 C -0.073 4.073 14 N -0.266 5.266 15 C 0.081 3.919 16 C -0.561 4.561 17 H 0.085 0.915 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.796 3.204 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.188 1.188 24 C -0.088 4.088 25 C -0.048 4.048 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.256 0.744 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.032 0.968 39 H 0.105 0.895 40 H -0.023 1.023 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.035 0.965 44 H 0.103 0.897 45 H 0.177 0.823 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.133 -22.956 -14.417 29.305 hybrid contribution 0.793 -0.027 1.470 1.670 sum -10.340 -22.983 -12.947 28.333 Atomic orbital electron populations 1.21784 0.93726 1.03193 1.02415 1.22631 0.95795 0.82695 1.01241 1.87920 1.21519 1.28216 1.95711 1.22841 0.81640 0.94705 1.03372 1.21772 1.01230 0.92393 0.85252 1.45762 1.57266 1.08555 1.21731 1.19930 0.80030 0.83634 0.86850 1.90345 1.42179 1.61052 1.46650 1.20263 0.81374 0.82342 0.87533 1.90721 1.39154 1.62814 1.50069 1.48229 1.50773 1.11506 1.20410 1.21985 0.96269 0.97325 0.84548 1.22376 0.94872 0.94058 0.96020 1.62050 1.29767 1.26509 1.08274 1.19391 0.87926 0.91645 0.92898 1.21459 0.93900 1.21800 1.18989 0.91494 1.25935 0.95069 0.99022 0.99727 1.70093 1.03789 1.41237 1.42366 0.85353 0.78462 0.77925 0.78693 1.19889 1.20894 1.18760 1.22508 0.96511 0.96172 0.93561 1.23323 0.91610 0.97159 0.92665 0.92490 0.89305 0.92854 0.91883 0.92379 0.88838 0.91124 0.90392 0.87896 0.74381 0.89363 0.88212 0.96787 0.89537 1.02254 0.97330 0.92709 0.96450 0.89685 0.82341 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.05 0.50 6.66 71.98 0.48 0.98 16 3 O -0.41 -5.86 10.29 -148.98 -1.53 -7.39 16 4 C 0.05 0.47 6.07 71.98 0.44 0.91 16 5 C 0.12 1.54 6.06 86.38 0.52 2.07 16 6 N -0.68 -12.93 5.49 -464.40 -2.55 -15.48 16 7 C 0.51 13.04 7.81 87.27 0.68 13.72 16 8 O -0.52 -14.45 13.03 -3.24 -0.04 -14.49 16 9 C 0.50 14.98 7.77 87.27 0.68 15.66 16 10 O -0.55 -17.84 15.95 -3.26 -0.05 -17.89 16 11 N -0.58 -18.21 3.00 -818.63 -2.46 -20.67 16 12 C 0.12 3.92 6.62 86.51 0.57 4.50 16 13 C 0.06 2.20 5.47 86.54 0.47 2.67 16 14 N -0.54 -23.71 4.62 -898.88 -4.15 -27.86 16 15 C 0.21 11.17 4.72 85.56 0.40 11.57 16 16 C -0.52 -29.53 8.41 25.60 0.22 -29.31 16 17 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 18 C 0.00 0.03 5.46 84.65 0.46 0.49 16 19 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 20 Si 0.97 44.22 29.54 68.60 2.03 46.24 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 24 C 0.04 1.54 5.62 86.38 0.49 2.02 16 25 C 0.07 2.28 6.35 86.35 0.55 2.82 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.09 0.51 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.42 7.59 7.96 -92.71 -0.74 6.85 16 36 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.10 3.07 7.07 -2.39 -0.02 3.05 16 38 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 3.60 6.67 -2.39 -0.02 3.59 16 40 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 41 H 0.01 0.50 7.97 -2.38 -0.02 0.48 16 42 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 43 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.08 3.08 7.99 -2.39 -0.02 3.06 16 45 H 0.16 4.70 3.93 -74.93 -0.29 4.41 16 46 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -69.64 374.82 -1.82 -71.46 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -0.05 Total: 14.85 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 6.70 Total: 27.34 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -8.88 Total: -120.12 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -1.63 Total: -39.77 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.64 -1.82 -71.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602232198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.668 kcal (2) G-P(sol) polarization free energy of solvation -69.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds