Wall clock time and date at job start Tue Mar 31 2020 04:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46967 * 2 1 4 4 N 1.46500 * 109.46894 * 240.00331 * 2 1 3 5 5 C 1.34773 * 120.00133 * 59.99842 * 4 2 1 6 6 O 1.21501 * 120.00246 * 359.97438 * 5 4 2 7 7 O 1.34638 * 119.99963 * 180.02562 * 5 4 2 8 8 C 1.50697 * 109.47562 * 120.00134 * 2 1 3 9 9 O 1.21283 * 119.99966 * 265.00057 * 8 2 1 10 10 N 1.34778 * 120.00266 * 84.99873 * 8 2 1 11 11 C 1.46501 * 120.00231 * 180.02562 * 10 8 2 12 12 C 1.53000 * 109.46914 * 179.97438 * 11 10 8 13 13 C 1.53350 * 109.41773 * 295.12314 * 12 11 10 14 14 C 1.53198 * 109.14641 * 178.67869 * 13 12 11 15 15 N 1.46925 * 108.89335 * 54.57862 * 14 13 12 16 16 C 1.36931 * 120.63201 * 126.29969 * 15 14 13 17 17 H 1.08005 * 119.99889 * 331.83485 * 16 15 14 18 18 C 1.38813 * 120.00220 * 151.82683 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.08678 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.08567 * 18 16 15 21 21 H 1.48496 * 109.47191 * 90.00149 * 20 18 16 22 22 H 1.48501 * 109.46981 * 210.00196 * 20 18 16 23 23 H 1.48500 * 109.46794 * 329.99854 * 20 18 16 24 24 C 1.46925 * 118.73856 * 306.31536 * 15 14 13 25 25 C 1.53044 * 109.45578 * 174.99670 * 12 11 10 26 26 H 1.09004 * 109.46895 * 299.99449 * 1 2 3 27 27 H 1.09000 * 109.47457 * 59.99913 * 1 2 3 28 28 H 1.09000 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46908 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47103 * 300.00303 * 3 2 1 31 31 H 1.08995 * 109.47234 * 60.00075 * 3 2 1 32 32 H 0.97004 * 119.99611 * 239.99826 * 4 2 1 33 33 H 0.96699 * 117.00283 * 180.02562 * 7 5 4 34 34 H 0.97000 * 119.99583 * 359.97438 * 10 8 2 35 35 H 1.09000 * 109.47093 * 59.99701 * 11 10 8 36 36 H 1.08998 * 109.46676 * 299.99753 * 11 10 8 37 37 H 1.08997 * 109.45943 * 55.02788 * 12 11 10 38 38 H 1.08996 * 109.68537 * 58.71633 * 13 12 11 39 39 H 1.09000 * 109.47180 * 298.51549 * 13 12 11 40 40 H 1.08997 * 109.58387 * 294.71773 * 14 13 12 41 41 H 1.08993 * 109.58533 * 174.43928 * 14 13 12 42 42 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58495 * 173.39541 * 24 15 14 44 44 H 1.09000 * 109.58924 * 293.68296 * 24 15 14 45 45 H 1.08996 * 109.49900 * 61.43384 * 25 12 11 46 46 H 1.08999 * 109.52516 * 301.35224 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 1.6926 -0.2301 -2.4203 6 8 0.9937 0.7575 -2.5318 7 8 2.1409 -0.8650 -3.5196 8 6 2.0324 -0.7104 1.2304 9 8 2.3209 -0.0749 2.2223 10 7 2.1612 -2.0520 1.2286 11 6 2.6491 -2.7427 2.4249 12 6 2.7000 -4.2486 2.1592 13 6 1.2774 -4.7751 1.9346 14 6 1.3385 -6.2765 1.6366 15 7 2.0678 -6.9476 2.7213 16 6 1.5097 -8.0062 3.3867 17 1 0.4358 -8.0854 3.4713 18 6 2.3239 -8.9778 3.9523 19 7 3.5830 -9.0783 3.5823 20 14 1.6327 -10.1426 5.2388 21 1 1.0811 -11.3481 4.5697 22 1 2.7141 -10.5462 6.1731 23 1 0.5535 -9.4594 5.9963 24 6 3.4072 -6.4609 3.0787 25 6 3.3261 -4.9576 3.3624 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 2.5759 -1.4792 -1.1072 33 1 1.8815 -0.4974 -4.3755 34 1 1.9301 -2.5603 0.4355 35 1 1.9762 -2.5438 3.2591 36 1 3.6482 -2.3826 2.6702 37 1 3.3020 -4.4404 1.2711 38 1 0.8223 -4.2551 1.0917 39 1 0.6816 -4.6061 2.8316 40 1 1.8565 -6.4407 0.6918 41 1 0.3271 -6.6779 1.5733 42 1 4.1520 -9.7569 3.9778 43 1 3.7599 -6.9821 3.9686 44 1 4.0945 -6.6424 2.2524 45 1 2.7111 -4.7867 4.2459 46 1 4.3283 -4.5654 3.5354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738754764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:12 Heat of formation + Delta-G solvation = -108.673109 kcal Electronic energy + Delta-G solvation = -27049.108652 eV Core-core repulsion = 23167.083300 eV Total energy + Delta-G solvation = -3882.025351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24195 -39.91882 -38.00937 -36.98235 -35.61718 -35.15863 -32.90674 -31.80021 -30.85321 -29.79456 -27.64223 -27.14495 -24.75732 -23.62491 -22.48567 -21.98752 -21.12800 -19.92923 -19.73089 -19.07789 -17.56304 -17.45456 -16.75889 -16.26469 -15.95277 -15.56650 -14.93136 -14.86715 -14.27350 -14.18046 -13.78998 -13.74242 -13.56924 -13.37499 -13.14531 -12.69825 -12.57315 -12.46189 -12.38296 -12.33272 -11.96011 -11.87227 -11.49453 -11.40066 -11.03644 -10.86368 -10.73883 -10.57886 -10.31861 -10.27552 -10.08677 -9.90562 -9.79278 -9.61552 -9.48937 -9.20197 -8.50147 -6.70615 -5.82484 -3.24879 1.79141 2.38293 2.50018 2.85425 3.35118 3.42533 3.44887 4.12067 4.28627 4.46927 4.58876 4.62566 5.01183 5.12950 5.27412 5.29655 5.37089 5.40648 5.43048 5.54033 5.55459 5.76753 5.81430 5.84153 5.91020 5.96525 5.97895 6.04709 6.23834 6.25594 6.27035 6.37501 6.54061 6.61767 6.69241 6.75070 6.90167 6.91839 7.22622 7.33151 7.61640 7.76387 7.89215 8.00818 8.41973 9.18192 9.81594 10.38000 11.26115 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.002712 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.861866 B =10320.734959 C =10764.027570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.179 3.821 3 C -0.154 4.154 4 N -0.705 5.705 5 C 0.671 3.329 6 O -0.571 6.571 7 O -0.526 6.526 8 C 0.516 3.484 9 O -0.523 6.523 10 N -0.720 5.720 11 C 0.121 3.879 12 C -0.091 4.091 13 C -0.128 4.128 14 C 0.145 3.855 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.172 3.828 25 C -0.133 4.133 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.408 0.592 33 H 0.430 0.570 34 H 0.400 0.600 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.016 0.984 41 H 0.053 0.947 42 H 0.254 0.746 43 H 0.088 0.912 44 H 0.018 0.982 45 H 0.058 0.942 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 17.515 -11.019 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.091 3.909 3 C -0.212 4.212 4 N -0.368 5.368 5 C 0.423 3.577 6 O -0.460 6.460 7 O -0.336 6.336 8 C 0.299 3.701 9 O -0.398 6.398 10 N -0.373 5.373 11 C -0.002 4.002 12 C -0.110 4.110 13 C -0.167 4.167 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.046 3.954 25 C -0.172 4.172 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.244 0.756 33 H 0.290 0.710 34 H 0.235 0.765 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.034 0.966 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.036 0.964 45 H 0.077 0.923 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.200 18.125 -9.932 20.785 hybrid contribution -0.242 -1.155 -0.253 1.207 sum -2.442 16.971 -10.185 19.943 Atomic orbital electron populations 1.22261 0.91350 1.03575 1.05067 1.20614 0.96452 0.93728 0.80133 1.22118 1.01623 0.92874 1.04561 1.44795 1.56028 1.33474 1.02499 1.17671 0.78054 0.80655 0.81344 1.91006 1.41418 1.27247 1.86345 1.84203 1.73484 1.58577 1.17305 1.20285 0.78036 0.82614 0.89140 1.90752 1.48772 1.66027 1.34275 1.46231 1.66625 1.06643 1.17751 1.21687 0.99519 0.92416 0.86600 1.21384 0.98027 0.91253 1.00289 1.22141 0.95240 0.98863 1.00461 1.20878 0.96257 0.90006 0.91000 1.44039 1.16249 1.34647 1.36552 1.19166 0.91433 0.99284 1.28423 0.91782 1.25042 0.96441 0.97114 1.01007 1.70023 1.06242 1.35291 1.43168 0.86317 0.78072 0.80880 0.81629 1.21399 1.21533 1.20476 1.20762 0.86310 0.87980 1.00372 1.22175 0.98808 0.99913 0.96337 0.90432 0.88848 0.91701 0.92087 0.89468 0.90086 0.75575 0.70960 0.76523 0.91242 0.91416 0.91247 0.93559 0.92083 0.96615 0.92892 0.93618 0.89400 0.96413 0.92333 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 8.38 37.16 0.31 -1.20 16 2 C 0.18 1.73 0.98 -132.97 -0.13 1.60 16 3 C -0.15 -1.54 7.93 37.16 0.29 -1.24 16 4 N -0.70 -5.86 4.86 -53.56 -0.26 -6.12 16 5 C 0.67 6.05 8.54 54.05 0.46 6.52 16 6 O -0.57 -6.50 13.34 -19.27 -0.26 -6.76 16 7 O -0.53 -3.43 13.48 -40.32 -0.54 -3.97 16 8 C 0.52 6.03 6.65 -10.99 -0.07 5.95 16 9 O -0.52 -7.96 16.10 5.56 0.09 -7.87 16 10 N -0.72 -7.65 4.97 -60.29 -0.30 -7.95 16 11 C 0.12 1.53 5.07 -4.04 -0.02 1.51 16 12 C -0.09 -1.31 2.19 -90.42 -0.20 -1.51 16 13 C -0.13 -1.96 5.27 -26.45 -0.14 -2.10 16 14 C 0.15 2.84 6.50 -3.71 -0.02 2.81 16 15 N -0.59 -14.24 2.99 -172.32 -0.52 -14.75 16 16 C -0.25 -6.80 9.58 -15.06 -0.14 -6.95 16 17 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 19 N -0.90 -25.69 11.20 55.49 0.62 -25.06 16 20 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.17 3.89 5.30 -3.71 -0.02 3.87 16 25 C -0.13 -2.32 5.36 -26.61 -0.14 -2.46 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.93 6.16 -51.93 -0.32 0.61 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.91 6.17 -51.93 -0.32 0.59 16 31 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 32 H 0.41 2.87 7.35 -40.82 -0.30 2.57 16 33 H 0.43 0.94 9.11 45.56 0.42 1.36 16 34 H 0.40 3.50 6.40 -40.82 -0.26 3.23 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.58 7.16 -51.93 -0.37 0.21 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -32.62 364.48 -7.10 -39.73 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.49 Total: 4.17 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 0.09 Total: 6.78 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.45 Total: -53.89 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.71 Total: -18.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.62 -7.10 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738754764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.948 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds