Wall clock time and date at job start Tue Mar 31 2020 04:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46967 * 2 1 4 4 N 1.46500 * 109.46894 * 240.00331 * 2 1 3 5 5 C 1.34773 * 120.00133 * 59.99842 * 4 2 1 6 6 O 1.21501 * 120.00246 * 359.97438 * 5 4 2 7 7 O 1.34638 * 119.99963 * 180.02562 * 5 4 2 8 8 C 1.50697 * 109.47562 * 120.00134 * 2 1 3 9 9 O 1.21283 * 119.99966 * 265.00057 * 8 2 1 10 10 N 1.34778 * 120.00266 * 84.99873 * 8 2 1 11 11 C 1.46501 * 120.00231 * 180.02562 * 10 8 2 12 12 C 1.53000 * 109.46914 * 179.97438 * 11 10 8 13 13 C 1.53350 * 109.41773 * 295.12314 * 12 11 10 14 14 C 1.53198 * 109.14641 * 178.67869 * 13 12 11 15 15 N 1.46925 * 108.89335 * 54.57862 * 14 13 12 16 16 C 1.36931 * 120.63201 * 126.29969 * 15 14 13 17 17 H 1.08005 * 119.99889 * 331.83485 * 16 15 14 18 18 C 1.38813 * 120.00220 * 151.82683 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.08678 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.08567 * 18 16 15 21 21 H 1.48496 * 109.47191 * 90.00149 * 20 18 16 22 22 H 1.48501 * 109.46981 * 210.00196 * 20 18 16 23 23 H 1.48500 * 109.46794 * 329.99854 * 20 18 16 24 24 C 1.46925 * 118.73856 * 306.31536 * 15 14 13 25 25 C 1.53044 * 109.45578 * 174.99670 * 12 11 10 26 26 H 1.09004 * 109.46895 * 299.99449 * 1 2 3 27 27 H 1.09000 * 109.47457 * 59.99913 * 1 2 3 28 28 H 1.09000 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46908 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47103 * 300.00303 * 3 2 1 31 31 H 1.08995 * 109.47234 * 60.00075 * 3 2 1 32 32 H 0.97004 * 119.99611 * 239.99826 * 4 2 1 33 33 H 0.96699 * 117.00283 * 180.02562 * 7 5 4 34 34 H 0.97000 * 119.99583 * 359.97438 * 10 8 2 35 35 H 1.09000 * 109.47093 * 59.99701 * 11 10 8 36 36 H 1.08998 * 109.46676 * 299.99753 * 11 10 8 37 37 H 1.08997 * 109.45943 * 55.02788 * 12 11 10 38 38 H 1.08996 * 109.68537 * 58.71633 * 13 12 11 39 39 H 1.09000 * 109.47180 * 298.51549 * 13 12 11 40 40 H 1.08997 * 109.58387 * 294.71773 * 14 13 12 41 41 H 1.08993 * 109.58533 * 174.43928 * 14 13 12 42 42 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58495 * 173.39541 * 24 15 14 44 44 H 1.09000 * 109.58924 * 293.68296 * 24 15 14 45 45 H 1.08996 * 109.49900 * 61.43384 * 25 12 11 46 46 H 1.08999 * 109.52516 * 301.35224 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 1.6926 -0.2301 -2.4203 6 8 0.9937 0.7575 -2.5318 7 8 2.1409 -0.8650 -3.5196 8 6 2.0324 -0.7104 1.2304 9 8 2.3209 -0.0749 2.2223 10 7 2.1612 -2.0520 1.2286 11 6 2.6491 -2.7427 2.4249 12 6 2.7000 -4.2486 2.1592 13 6 1.2774 -4.7751 1.9346 14 6 1.3385 -6.2765 1.6366 15 7 2.0678 -6.9476 2.7213 16 6 1.5097 -8.0062 3.3867 17 1 0.4358 -8.0854 3.4713 18 6 2.3239 -8.9778 3.9523 19 7 3.5830 -9.0783 3.5823 20 14 1.6327 -10.1426 5.2388 21 1 1.0811 -11.3481 4.5697 22 1 2.7141 -10.5462 6.1731 23 1 0.5535 -9.4594 5.9963 24 6 3.4072 -6.4609 3.0787 25 6 3.3261 -4.9576 3.3624 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 2.5759 -1.4792 -1.1072 33 1 1.8815 -0.4974 -4.3755 34 1 1.9301 -2.5603 0.4355 35 1 1.9762 -2.5438 3.2591 36 1 3.6482 -2.3826 2.6702 37 1 3.3020 -4.4404 1.2711 38 1 0.8223 -4.2551 1.0917 39 1 0.6816 -4.6061 2.8316 40 1 1.8565 -6.4407 0.6918 41 1 0.3271 -6.6779 1.5733 42 1 4.1520 -9.7569 3.9778 43 1 3.7599 -6.9821 3.9686 44 1 4.0945 -6.6424 2.2524 45 1 2.7111 -4.7867 4.2459 46 1 4.3283 -4.5654 3.5354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738754764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:12 Heat of formation + Delta-G solvation = -133.854740 kcal Electronic energy + Delta-G solvation = -27050.200609 eV Core-core repulsion = 23167.083300 eV Total energy + Delta-G solvation = -3883.117309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.02539 -40.76546 -39.41125 -37.69850 -36.51352 -36.35751 -34.48094 -32.54788 -32.49089 -31.39350 -28.70930 -28.27544 -26.19691 -24.78104 -23.81532 -23.06265 -22.46707 -20.99486 -20.54530 -20.29539 -18.71463 -18.28990 -18.09455 -17.07695 -16.89897 -16.76944 -16.43426 -15.83791 -15.71216 -15.29358 -15.17708 -14.99428 -14.77457 -14.42500 -14.25392 -14.01541 -13.85573 -13.46570 -13.38973 -13.25020 -13.14938 -12.98512 -12.81541 -12.59951 -12.55199 -12.26232 -12.19782 -12.01696 -11.83002 -11.66541 -11.60331 -11.25267 -11.09729 -10.86150 -10.52027 -10.50620 -10.19138 -8.65140 -7.86753 -5.31179 1.07254 1.46039 1.48267 1.57304 1.60305 1.76695 1.93629 2.51879 3.28064 3.38894 3.60643 3.72680 3.80805 3.84695 3.88240 3.95628 4.09429 4.52345 4.55837 4.59237 4.67052 4.69482 4.70526 4.74685 4.77874 4.82201 4.95226 5.03004 5.09571 5.13885 5.19161 5.20502 5.28296 5.30647 5.34054 5.45046 5.57016 5.67462 5.81389 5.83170 6.25071 6.37351 6.41214 7.00741 7.17267 7.41347 7.89997 8.39803 9.19220 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.002712 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.861866 B =10320.734959 C =10764.027570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.186 3.814 3 C -0.150 4.150 4 N -0.698 5.698 5 C 0.672 3.328 6 O -0.597 6.597 7 O -0.520 6.520 8 C 0.521 3.479 9 O -0.558 6.558 10 N -0.708 5.708 11 C 0.134 3.866 12 C -0.079 4.079 13 C -0.115 4.115 14 C 0.139 3.861 15 N -0.612 5.612 16 C -0.262 4.262 17 H 0.064 0.936 18 C -0.050 4.050 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.272 1.272 24 C 0.177 3.823 25 C -0.122 4.122 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.416 0.584 33 H 0.448 0.552 34 H 0.412 0.588 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.019 0.981 41 H 0.049 0.951 42 H 0.249 0.751 43 H 0.049 0.951 44 H -0.001 1.001 45 H 0.050 0.950 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 18.545 -12.018 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.097 3.903 3 C -0.208 4.208 4 N -0.362 5.362 5 C 0.425 3.575 6 O -0.488 6.488 7 O -0.332 6.332 8 C 0.306 3.694 9 O -0.436 6.436 10 N -0.361 5.361 11 C 0.010 3.990 12 C -0.098 4.098 13 C -0.154 4.154 14 C 0.014 3.986 15 N -0.336 5.336 16 C -0.393 4.393 17 H 0.081 0.919 18 C -0.246 4.246 19 N -0.580 5.580 20 Si 0.791 3.209 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.197 1.197 24 C 0.051 3.949 25 C -0.162 4.162 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.254 0.746 33 H 0.311 0.689 34 H 0.249 0.751 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.017 0.983 45 H 0.068 0.932 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.953 19.151 -10.990 22.277 hybrid contribution -0.014 -1.485 -0.033 1.485 sum -2.967 17.666 -11.023 21.034 Atomic orbital electron populations 1.22230 0.90743 1.04084 1.04815 1.20440 0.96741 0.93254 0.79820 1.22067 1.01415 0.93137 1.04183 1.44645 1.55991 1.33539 1.02068 1.17698 0.77652 0.80304 0.81836 1.91000 1.42603 1.28428 1.86775 1.84186 1.73041 1.58220 1.17745 1.20497 0.77212 0.82558 0.89141 1.90746 1.50352 1.66768 1.35705 1.46048 1.66051 1.06416 1.17571 1.21380 0.99635 0.90921 0.87048 1.21220 0.97329 0.92089 0.99150 1.21995 0.95914 0.95946 1.01535 1.21072 0.95412 0.92356 0.89796 1.44326 1.16789 1.34590 1.37905 1.19486 0.91607 0.99844 1.28341 0.91872 1.25750 0.96838 0.98964 1.03011 1.70167 1.07339 1.36082 1.44393 0.85351 0.77320 0.78981 0.79248 1.21166 1.21929 1.19709 1.20569 0.85495 0.90934 0.97870 1.21969 1.00250 0.96471 0.97470 0.90367 0.89439 0.90796 0.92324 0.89802 0.90465 0.74640 0.68865 0.75070 0.92060 0.91199 0.90113 0.89717 0.93078 0.96316 0.93254 0.94163 0.93241 0.98266 0.93161 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 8.38 71.98 0.60 -2.01 16 2 C 0.19 3.22 0.98 2.86 0.00 3.22 16 3 C -0.15 -2.81 7.93 71.98 0.57 -2.24 16 4 N -0.70 -9.81 4.86 -553.78 -2.69 -12.50 16 5 C 0.67 10.58 8.54 129.79 1.11 11.69 16 6 O -0.60 -12.57 13.34 19.84 0.26 -12.30 16 7 O -0.52 -5.37 13.48 -55.47 -0.75 -6.11 16 8 C 0.52 10.96 6.65 87.66 0.58 11.54 16 9 O -0.56 -16.04 16.10 -3.04 -0.05 -16.09 16 10 N -0.71 -12.80 4.97 -463.06 -2.30 -15.10 16 11 C 0.13 3.02 5.07 86.38 0.44 3.46 16 12 C -0.08 -2.08 2.19 -10.66 -0.02 -2.10 16 13 C -0.11 -3.22 5.27 30.78 0.16 -3.06 16 14 C 0.14 5.25 6.50 86.36 0.56 5.81 16 15 N -0.61 -29.54 2.99 -699.09 -2.09 -31.63 16 16 C -0.26 -14.21 9.58 84.03 0.81 -13.40 16 17 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 18 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 19 N -0.93 -54.51 11.20 21.65 0.24 -54.27 16 20 Si 0.96 44.47 29.59 68.60 2.03 46.50 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 C 0.18 8.12 5.30 86.36 0.46 8.58 16 25 C -0.12 -4.14 5.36 30.68 0.16 -3.98 16 26 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.09 1.59 6.16 -2.39 -0.01 1.57 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.65 6.17 -2.39 -0.01 1.64 16 31 H 0.08 1.50 7.87 -2.39 -0.02 1.48 16 32 H 0.42 4.52 7.35 -92.71 -0.68 3.84 16 33 H 0.45 0.81 9.11 -74.06 -0.67 0.14 16 34 H 0.41 5.55 6.40 -92.71 -0.59 4.96 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 1.75 7.16 -2.39 -0.02 1.73 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 41 H 0.05 1.87 7.93 -2.39 -0.02 1.85 16 42 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 43 H 0.05 2.64 6.06 -2.39 -0.01 2.62 16 44 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -71.37 364.48 -0.43 -71.80 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -0.93 Total: 14.56 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 5.85 Total: 15.14 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -6.84 Total: -113.50 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.53 Total: -34.51 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -71.37 -0.43 -71.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738754764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.056 kcal (2) G-P(sol) polarization free energy of solvation -71.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds