Wall clock time and date at job start Tue Mar 31 2020 04:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.53009 * 109.47238 * 270.00499 * 4 3 2 6 6 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 7 7 O 1.21283 * 120.00463 * 179.97438 * 6 3 2 8 8 C 1.50700 * 119.99675 * 359.72090 * 6 3 2 9 9 N 1.46499 * 109.47257 * 180.27849 * 8 6 3 10 10 C 1.34775 * 120.00181 * 179.97438 * 9 8 6 11 11 O 1.21589 * 120.00310 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00074 * 179.97438 * 10 9 8 13 13 C 1.47027 * 125.64482 * 359.69730 * 12 10 9 14 14 C 1.54337 * 107.26237 * 178.84928 * 13 12 10 15 15 C 1.55161 * 103.01946 * 338.13819 * 14 13 12 16 16 O 1.42898 * 111.00331 * 277.23226 * 15 14 13 17 17 C 1.50704 * 111.03624 * 153.39717 * 15 14 13 18 18 H 1.08002 * 119.99426 * 6.33368 * 17 15 14 19 19 C 1.37874 * 120.00022 * 186.32839 * 17 15 14 20 20 N 1.31519 * 120.00066 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00038 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47358 * 90.00065 * 21 19 17 23 23 H 1.48506 * 109.47234 * 210.00271 * 21 19 17 24 24 H 1.48501 * 109.47037 * 330.00005 * 21 19 17 25 25 C 1.47418 * 125.64758 * 180.02562 * 12 10 9 26 26 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 28 28 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 29 29 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 30 30 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 31 31 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 32 32 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 33 33 H 1.08993 * 109.47081 * 59.99692 * 5 4 3 34 34 H 1.09003 * 109.47165 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.46757 * 299.99562 * 5 4 3 36 36 H 1.09009 * 109.47352 * 300.27556 * 8 6 3 37 37 H 1.08998 * 109.47585 * 60.27844 * 8 6 3 38 38 H 0.97002 * 119.99778 * 0.02562 * 9 8 6 39 39 H 1.08999 * 109.88098 * 298.38766 * 13 12 10 40 40 H 1.08997 * 109.88428 * 59.55880 * 13 12 10 41 41 H 1.08998 * 110.84739 * 219.67370 * 14 13 12 42 42 H 1.08999 * 110.51963 * 96.44892 * 14 13 12 43 43 H 0.96701 * 114.00219 * 173.64713 * 16 15 14 44 44 H 0.96997 * 120.00005 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.36816 * 322.92949 * 25 12 10 46 46 H 1.08999 * 110.36676 * 85.14926 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 6 2.2430 2.0166 1.1672 7 8 2.6477 3.1599 1.1672 8 6 1.9859 1.3083 2.4723 9 7 2.2981 2.2077 3.5858 10 6 2.1420 1.7864 4.8564 11 8 1.7426 0.6597 5.0787 12 7 2.4298 2.6136 5.8809 13 6 2.9257 3.9921 5.7557 14 6 3.0830 4.5537 7.1847 15 6 2.1376 3.6513 8.0210 16 8 0.7865 4.1090 7.9377 17 6 2.5917 3.5753 9.4560 18 1 3.4108 4.1915 9.7964 19 6 1.9615 2.7194 10.3341 20 7 0.9644 1.9688 9.9193 21 14 2.5239 2.6257 12.1129 22 1 1.7688 3.6146 12.9235 23 1 2.2743 1.2599 12.6398 24 1 3.9758 2.9282 12.1896 25 6 2.3059 2.2838 7.3123 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.5818 1.6876 -2.0283 32 1 2.0957 3.1410 -1.1384 33 1 3.8746 0.7622 -1.8407 34 1 3.8892 2.3448 -2.6546 35 1 4.3884 2.2155 -0.9507 36 1 0.9376 1.0142 2.5258 37 1 2.6158 0.4209 2.5344 38 1 2.6164 3.1067 3.4085 39 1 3.8892 3.9946 5.2462 40 1 2.2081 4.5951 5.1993 41 1 2.7624 5.5945 7.2299 42 1 4.1137 4.4514 7.5240 43 1 0.1457 3.5229 8.3634 44 1 0.5212 1.3663 10.5370 45 1 1.4301 1.6579 7.4830 46 1 3.2059 1.7801 7.6648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825947708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:08 Heat of formation + Delta-G solvation = -110.046616 kcal Electronic energy + Delta-G solvation = -26984.301812 eV Core-core repulsion = 23102.216901 eV Total energy + Delta-G solvation = -3882.084911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48645 -39.39308 -37.34491 -36.53571 -34.20873 -34.13047 -32.47252 -32.18873 -30.30453 -29.85003 -27.99709 -27.25153 -24.85663 -23.95111 -23.25132 -22.31964 -19.72347 -19.62585 -19.22249 -17.82115 -17.09681 -17.01282 -16.54723 -16.03367 -15.46017 -15.10406 -14.89326 -14.53808 -14.30561 -14.19755 -14.07648 -13.80224 -13.33369 -13.08106 -12.97873 -12.94258 -12.74780 -12.44358 -12.34307 -12.05747 -11.94971 -11.61120 -11.51024 -11.36562 -11.34142 -11.00818 -10.77611 -10.54678 -10.43690 -10.15473 -10.08029 -9.63917 -9.31974 -9.09411 -8.87836 -8.65924 -8.31306 -7.64942 -6.23717 -4.33302 2.32641 2.49375 3.20831 3.25995 3.31249 3.33763 3.74650 4.16711 4.29139 4.50679 4.55016 4.73661 4.75099 4.97194 4.99027 5.03459 5.08144 5.26720 5.29668 5.31825 5.45138 5.47603 5.49061 5.59970 5.73677 5.82354 5.83328 5.87129 6.10401 6.14098 6.21048 6.57252 6.62542 6.76577 6.93666 7.00473 7.02044 7.27701 7.37466 7.68930 7.78372 7.83915 8.07959 8.55627 8.70968 9.13145 9.34426 9.42785 10.83304 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.028929 B = 0.002760 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.660083 B =10143.180828 C =10634.056056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 N -0.612 5.612 4 C 0.111 3.889 5 C -0.168 4.168 6 C 0.512 3.488 7 O -0.533 6.533 8 C 0.124 3.876 9 N -0.743 5.743 10 C 0.719 3.281 11 O -0.599 6.599 12 N -0.625 5.625 13 C 0.104 3.896 14 C -0.115 4.115 15 C 0.248 3.752 16 O -0.582 6.582 17 C -0.536 4.536 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.892 5.892 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.114 3.886 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.405 0.595 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.381 0.619 44 H 0.270 0.730 45 H 0.086 0.914 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.861 -2.981 -21.507 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.023 4.023 3 N -0.346 5.346 4 C -0.011 4.011 5 C -0.226 4.226 6 C 0.300 3.700 7 O -0.410 6.410 8 C -0.004 4.004 9 N -0.404 5.404 10 C 0.421 3.579 11 O -0.479 6.479 12 N -0.362 5.362 13 C -0.020 4.020 14 C -0.153 4.153 15 C 0.207 3.793 16 O -0.391 6.391 17 C -0.575 4.575 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.530 5.530 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.008 4.008 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.242 0.758 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.230 0.770 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.925 -2.895 -21.661 21.938 hybrid contribution 0.119 -0.324 1.023 1.080 sum 2.044 -3.219 -20.637 20.987 Atomic orbital electron populations 1.22233 0.95396 1.02818 1.02810 1.21685 0.94877 0.81901 1.03866 1.47980 1.66222 1.14651 1.05793 1.21430 0.96637 0.98735 0.84307 1.22133 0.96929 1.01843 1.01707 1.20709 0.76957 0.86663 0.85671 1.90690 1.45428 1.17781 1.87078 1.20842 1.03028 0.93218 0.83350 1.44807 1.73943 1.18097 1.03506 1.15390 0.78925 0.84045 0.79505 1.90877 1.54184 1.18991 1.83816 1.47894 1.67798 1.13458 1.07020 1.21961 0.97341 0.83270 0.99396 1.22592 1.00305 1.00066 0.92366 1.19648 0.80508 0.86954 0.92187 1.86109 1.18337 1.53449 1.81160 1.21455 1.18216 1.23935 0.93873 0.91538 1.25084 0.94449 0.94316 0.99428 1.69726 1.22283 1.25043 1.35995 0.86406 0.79168 0.77395 0.83936 1.20437 1.21044 1.19731 1.23150 1.02000 1.01093 0.74522 0.91020 0.91946 0.92269 0.89945 0.89661 0.90493 0.89749 0.92582 0.91559 0.92094 0.88762 0.88892 0.75831 0.92983 0.92519 0.90749 0.90424 0.76969 0.92041 0.89593 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.24 37.16 0.38 -0.69 16 2 C 0.10 0.63 5.93 -4.04 -0.02 0.60 16 3 N -0.61 -5.47 2.47 -173.68 -0.43 -5.90 16 4 C 0.11 0.85 6.13 -4.04 -0.02 0.82 16 5 C -0.17 -1.18 10.24 37.16 0.38 -0.80 16 6 C 0.51 6.31 7.74 -10.98 -0.09 6.23 16 7 O -0.53 -8.20 15.25 5.55 0.08 -8.11 16 8 C 0.12 1.65 4.71 -5.19 -0.02 1.62 16 9 N -0.74 -12.48 5.49 -66.41 -0.36 -12.84 16 10 C 0.72 15.15 8.49 -86.91 -0.74 14.41 16 11 O -0.60 -14.41 16.60 5.29 0.09 -14.32 16 12 N -0.63 -13.49 3.33 -176.22 -0.59 -14.08 16 13 C 0.10 1.94 6.15 -3.05 -0.02 1.92 16 14 C -0.12 -2.35 6.13 -24.89 -0.15 -2.50 16 15 C 0.25 6.08 0.87 -89.61 -0.08 6.00 16 16 O -0.58 -15.04 13.16 -35.23 -0.46 -15.51 16 17 C -0.54 -14.06 8.27 -34.44 -0.28 -14.34 16 18 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 19 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 20 N -0.89 -23.97 10.69 55.43 0.59 -23.38 16 21 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.11 2.81 5.38 -2.52 -0.01 2.79 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.49 7.20 -51.93 -0.37 0.11 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 30 H 0.09 0.54 6.45 -51.93 -0.33 0.20 16 31 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.08 0.78 7.42 -51.93 -0.39 0.39 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 1.21 7.16 -51.92 -0.37 0.84 16 37 H 0.09 1.15 7.41 -51.93 -0.38 0.76 16 38 H 0.40 6.59 6.42 -40.82 -0.26 6.33 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 43 H 0.38 10.07 7.57 45.56 0.34 10.41 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.09 2.37 7.33 -51.93 -0.38 1.99 16 46 H 0.06 1.46 8.03 -51.93 -0.42 1.04 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -31.98 373.79 -7.99 -39.97 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -6.75 Total: 15.25 kcal Atomic # 6 Polarization: 18.61 SS G_CDS: -0.78 Total: 17.83 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.79 Total: -56.20 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.29 Total: -37.94 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.98 -7.99 -39.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825947708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.078 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds