Wall clock time and date at job start Tue Mar 31 2020 04:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.53009 * 109.47238 * 270.00499 * 4 3 2 6 6 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 7 7 O 1.21283 * 120.00463 * 179.97438 * 6 3 2 8 8 C 1.50700 * 119.99675 * 359.72090 * 6 3 2 9 9 N 1.46499 * 109.47257 * 180.27849 * 8 6 3 10 10 C 1.34775 * 120.00181 * 179.97438 * 9 8 6 11 11 O 1.21589 * 120.00310 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00074 * 179.97438 * 10 9 8 13 13 C 1.47027 * 125.64482 * 359.69730 * 12 10 9 14 14 C 1.54337 * 107.26237 * 178.84928 * 13 12 10 15 15 C 1.55161 * 103.01946 * 338.13819 * 14 13 12 16 16 O 1.42898 * 111.00331 * 277.23226 * 15 14 13 17 17 C 1.50704 * 111.03624 * 153.39717 * 15 14 13 18 18 H 1.08002 * 119.99426 * 6.33368 * 17 15 14 19 19 C 1.37874 * 120.00022 * 186.32839 * 17 15 14 20 20 N 1.31519 * 120.00066 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00038 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47358 * 90.00065 * 21 19 17 23 23 H 1.48506 * 109.47234 * 210.00271 * 21 19 17 24 24 H 1.48501 * 109.47037 * 330.00005 * 21 19 17 25 25 C 1.47418 * 125.64758 * 180.02562 * 12 10 9 26 26 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 28 28 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 29 29 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 30 30 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 31 31 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 32 32 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 33 33 H 1.08993 * 109.47081 * 59.99692 * 5 4 3 34 34 H 1.09003 * 109.47165 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.46757 * 299.99562 * 5 4 3 36 36 H 1.09009 * 109.47352 * 300.27556 * 8 6 3 37 37 H 1.08998 * 109.47585 * 60.27844 * 8 6 3 38 38 H 0.97002 * 119.99778 * 0.02562 * 9 8 6 39 39 H 1.08999 * 109.88098 * 298.38766 * 13 12 10 40 40 H 1.08997 * 109.88428 * 59.55880 * 13 12 10 41 41 H 1.08998 * 110.84739 * 219.67370 * 14 13 12 42 42 H 1.08999 * 110.51963 * 96.44892 * 14 13 12 43 43 H 0.96701 * 114.00219 * 173.64713 * 16 15 14 44 44 H 0.96997 * 120.00005 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.36816 * 322.92949 * 25 12 10 46 46 H 1.08999 * 110.36676 * 85.14926 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 6 2.2430 2.0166 1.1672 7 8 2.6477 3.1599 1.1672 8 6 1.9859 1.3083 2.4723 9 7 2.2981 2.2077 3.5858 10 6 2.1420 1.7864 4.8564 11 8 1.7426 0.6597 5.0787 12 7 2.4298 2.6136 5.8809 13 6 2.9257 3.9921 5.7557 14 6 3.0830 4.5537 7.1847 15 6 2.1376 3.6513 8.0210 16 8 0.7865 4.1090 7.9377 17 6 2.5917 3.5753 9.4560 18 1 3.4108 4.1915 9.7964 19 6 1.9615 2.7194 10.3341 20 7 0.9644 1.9688 9.9193 21 14 2.5239 2.6257 12.1129 22 1 1.7688 3.6146 12.9235 23 1 2.2743 1.2599 12.6398 24 1 3.9758 2.9282 12.1896 25 6 2.3059 2.2838 7.3123 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.5818 1.6876 -2.0283 32 1 2.0957 3.1410 -1.1384 33 1 3.8746 0.7622 -1.8407 34 1 3.8892 2.3448 -2.6546 35 1 4.3884 2.2155 -0.9507 36 1 0.9376 1.0142 2.5258 37 1 2.6158 0.4209 2.5344 38 1 2.6164 3.1067 3.4085 39 1 3.8892 3.9946 5.2462 40 1 2.2081 4.5951 5.1993 41 1 2.7624 5.5945 7.2299 42 1 4.1137 4.4514 7.5240 43 1 0.1457 3.5229 8.3634 44 1 0.5212 1.3663 10.5370 45 1 1.4301 1.6579 7.4830 46 1 3.2059 1.7801 7.6648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825947708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:07 Heat of formation + Delta-G solvation = -133.832059 kcal Electronic energy + Delta-G solvation = -26985.333226 eV Core-core repulsion = 23102.216901 eV Total energy + Delta-G solvation = -3883.116325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.62127 -40.84730 -39.08746 -37.38771 -36.04336 -35.54966 -34.21603 -33.13895 -31.87284 -30.71146 -29.63493 -28.62770 -26.66916 -24.53340 -24.39695 -23.62320 -21.48836 -21.14464 -20.24201 -19.28288 -18.91103 -18.00488 -17.61364 -17.31916 -17.04417 -16.69244 -16.42680 -16.18848 -15.61195 -15.18389 -14.88913 -14.82857 -14.69412 -14.62745 -14.42836 -14.07481 -13.70933 -13.57089 -13.50097 -13.42834 -13.21533 -12.93962 -12.82575 -12.57931 -12.53543 -12.32613 -12.22148 -12.09241 -12.04545 -11.92453 -11.39893 -11.18892 -11.05202 -10.64940 -10.38013 -10.27821 -9.82088 -9.37334 -8.22532 -6.39721 1.36711 1.40006 1.45218 1.46744 1.55617 2.01856 2.08824 2.40209 3.02838 3.04043 3.29210 3.79679 3.98773 4.07192 4.14773 4.16947 4.18555 4.22660 4.27449 4.33450 4.45163 4.51854 4.59259 4.61004 4.73812 4.77096 4.89818 4.97669 5.03287 5.06462 5.09946 5.25361 5.26901 5.28763 5.36607 5.38338 5.46624 5.54793 5.77373 6.03011 6.13035 6.20612 6.67168 6.91795 6.99038 7.29338 7.36887 7.48373 8.82853 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.028929 B = 0.002760 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.660083 B =10143.180828 C =10634.056056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.094 3.906 3 N -0.602 5.602 4 C 0.107 3.893 5 C -0.162 4.162 6 C 0.513 3.487 7 O -0.569 6.569 8 C 0.121 3.879 9 N -0.729 5.729 10 C 0.716 3.284 11 O -0.635 6.635 12 N -0.632 5.632 13 C 0.106 3.894 14 C -0.109 4.109 15 C 0.232 3.768 16 O -0.587 6.587 17 C -0.555 4.555 18 H 0.069 0.931 19 C 0.026 3.974 20 N -0.915 5.915 21 Si 0.965 3.035 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.265 1.265 25 C 0.129 3.871 26 H 0.086 0.914 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.033 0.967 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.409 0.591 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.373 0.627 44 H 0.269 0.731 45 H 0.048 0.952 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 -3.005 -23.233 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.028 4.028 3 N -0.334 5.334 4 C -0.014 4.014 5 C -0.220 4.220 6 C 0.301 3.699 7 O -0.449 6.449 8 C -0.007 4.007 9 N -0.388 5.388 10 C 0.418 3.582 11 O -0.517 6.517 12 N -0.368 5.368 13 C -0.016 4.016 14 C -0.147 4.147 15 C 0.191 3.809 16 O -0.395 6.395 17 C -0.593 4.593 18 H 0.087 0.913 19 C -0.175 4.175 20 N -0.554 5.554 21 Si 0.791 3.209 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.190 1.190 25 C 0.006 3.994 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.130 0.870 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.247 0.753 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.221 0.779 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.754 -2.911 -23.465 23.804 hybrid contribution -0.171 -0.363 1.463 1.517 sum 2.583 -3.274 -22.002 22.393 Atomic orbital electron populations 1.22210 0.95133 1.03572 1.02076 1.21942 0.95032 0.80434 1.05373 1.48076 1.64627 1.15508 1.05206 1.21609 0.97893 0.97807 0.84123 1.22086 0.95669 1.02752 1.01530 1.20501 0.77013 0.86181 0.86186 1.90673 1.47525 1.19173 1.87531 1.21048 1.03589 0.93101 0.82944 1.44686 1.72713 1.18691 1.02758 1.15527 0.78718 0.83511 0.80488 1.90844 1.55781 1.20569 1.84556 1.47851 1.68251 1.14716 1.06008 1.22097 0.99181 0.81527 0.98794 1.22595 0.99832 0.99857 0.92429 1.19881 0.80444 0.88065 0.92469 1.86103 1.18975 1.53375 1.81046 1.21768 1.18443 1.24098 0.94993 0.91274 1.25838 0.94531 0.93993 1.03171 1.69847 1.23076 1.25399 1.37039 0.85443 0.78990 0.77157 0.79354 1.20113 1.21109 1.18963 1.22698 0.99439 1.00552 0.76714 0.89562 0.94033 0.91620 0.87020 0.89655 0.87380 0.91641 0.91252 0.89982 0.94746 0.88305 0.87753 0.75286 0.89729 0.91477 0.89682 0.89125 0.77852 0.92159 0.93345 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.24 71.98 0.74 -1.03 16 2 C 0.09 0.95 5.93 86.38 0.51 1.46 16 3 N -0.60 -9.67 2.47 -821.80 -2.03 -11.70 16 4 C 0.11 1.41 6.13 86.38 0.53 1.94 16 5 C -0.16 -1.94 10.24 71.99 0.74 -1.20 16 6 C 0.51 12.22 7.74 87.66 0.68 12.90 16 7 O -0.57 -17.26 15.25 -3.04 -0.05 -17.31 16 8 C 0.12 3.13 4.71 85.63 0.40 3.53 16 9 N -0.73 -24.10 5.49 -482.29 -2.65 -26.75 16 10 C 0.72 30.27 8.49 179.05 1.52 31.79 16 11 O -0.64 -31.16 16.60 -3.99 -0.07 -31.23 16 12 N -0.63 -27.30 3.33 -829.69 -2.76 -30.05 16 13 C 0.11 3.80 6.15 86.73 0.53 4.33 16 14 C -0.11 -4.31 6.13 31.79 0.19 -4.12 16 15 C 0.23 11.46 0.87 -10.14 -0.01 11.45 16 16 O -0.59 -30.83 13.16 -148.98 -1.96 -32.80 16 17 C -0.55 -29.16 8.27 25.60 0.21 -28.95 16 18 H 0.07 3.51 7.79 -2.91 -0.02 3.49 16 19 C 0.03 1.35 5.29 84.65 0.45 1.80 16 20 N -0.91 -50.34 10.69 21.45 0.23 -50.11 16 21 Si 0.97 42.08 29.54 68.60 2.03 44.10 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 25 C 0.13 6.53 5.38 86.86 0.47 6.99 16 26 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.04 0.61 7.20 -2.39 -0.02 0.59 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 0.55 8.07 -2.39 -0.02 0.53 16 30 H 0.09 0.90 6.45 -2.39 -0.02 0.88 16 31 H 0.11 0.78 8.07 -2.39 -0.02 0.76 16 32 H 0.07 1.14 7.42 -2.39 -0.02 1.13 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 2.50 7.16 -2.38 -0.02 2.48 16 37 H 0.10 2.48 7.41 -2.39 -0.02 2.46 16 38 H 0.41 12.94 6.42 -92.71 -0.60 12.34 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.09 3.31 8.03 -2.39 -0.02 3.29 16 43 H 0.37 20.43 7.57 -74.06 -0.56 19.87 16 44 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 45 H 0.05 2.78 7.33 -2.39 -0.02 2.77 16 46 H 0.04 2.22 8.03 -2.39 -0.02 2.20 16 Total: -1.00 -70.51 373.79 -0.46 -70.96 By element: Atomic # 1 Polarization: 44.15 SS G_CDS: -0.16 Total: 43.99 kcal Atomic # 6 Polarization: 33.93 SS G_CDS: 6.96 Total: 40.89 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -7.21 Total: -118.61 kcal Atomic # 8 Polarization: -79.26 SS G_CDS: -2.07 Total: -81.33 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -70.51 -0.46 -70.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825947708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.871 kcal (2) G-P(sol) polarization free energy of solvation -70.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds