Wall clock time and date at job start Tue Mar 31 2020 04:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47098 * 2 1 4 4 C 1.52992 * 109.47416 * 239.99678 * 2 1 3 5 5 C 1.50702 * 109.46878 * 119.99363 * 2 1 3 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 2 1 7 7 N 1.34775 * 119.99786 * 180.02562 * 5 2 1 8 8 N 1.40105 * 119.99633 * 180.02562 * 7 5 2 9 9 C 1.34777 * 119.99775 * 179.72021 * 8 7 5 10 10 O 1.21283 * 120.00222 * 0.28016 * 9 8 7 11 11 C 1.50703 * 120.00290 * 180.27576 * 9 8 7 12 12 N 1.46896 * 109.47254 * 180.02562 * 11 9 8 13 13 C 1.48525 * 111.00193 * 52.60384 * 12 11 9 14 14 C 1.54940 * 103.22735 * 159.71854 * 13 12 11 15 15 C 1.54596 * 102.92265 * 322.58855 * 14 13 12 16 16 O 1.42906 * 110.30489 * 263.04302 * 15 14 13 17 17 C 1.50689 * 110.31052 * 140.87296 * 15 14 13 18 18 H 1.08004 * 120.00236 * 244.28157 * 17 15 14 19 19 C 1.37878 * 120.00207 * 64.27960 * 17 15 14 20 20 N 1.31515 * 120.00171 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 120.00200 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47102 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46961 * 120.00209 * 21 19 17 24 24 H 1.48491 * 109.47400 * 240.00107 * 21 19 17 25 25 C 1.47907 * 110.99703 * 170.00417 * 12 11 9 26 26 H 1.09003 * 109.46965 * 300.00653 * 1 2 3 27 27 H 1.09003 * 109.47064 * 60.00512 * 1 2 3 28 28 H 1.08998 * 109.46943 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46985 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46745 * 299.99683 * 3 2 1 31 31 H 1.08994 * 109.47484 * 59.99273 * 3 2 1 32 32 H 1.09004 * 109.46913 * 300.00154 * 4 2 1 33 33 H 1.08994 * 109.47286 * 60.00105 * 4 2 1 34 34 H 1.09001 * 109.47300 * 180.02562 * 4 2 1 35 35 H 0.97000 * 120.00523 * 359.97438 * 7 5 2 36 36 H 0.97001 * 120.00437 * 0.02562 * 8 7 5 37 37 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 38 38 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 39 39 H 1.08999 * 110.66733 * 278.15758 * 13 12 11 40 40 H 1.09000 * 110.66754 * 41.28792 * 13 12 11 41 41 H 1.08999 * 110.72549 * 204.22245 * 14 13 12 42 42 H 1.09004 * 110.87044 * 81.01583 * 14 13 12 43 43 H 0.96701 * 113.99368 * 295.71243 * 16 15 14 44 44 H 0.96991 * 120.00526 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.91349 * 333.50437 * 25 12 11 46 46 H 1.08993 * 109.92082 * 94.60305 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 8 1.2442 -1.1715 2.0287 7 7 3.3574 -0.8330 1.4441 8 7 3.8243 -1.4938 2.5879 9 6 5.1493 -1.6214 2.7987 10 8 5.9376 -1.1598 2.0008 11 6 5.6517 -2.3376 4.0258 12 7 7.1206 -2.3412 4.0237 13 6 7.6561 -0.9668 3.8496 14 6 9.1044 -1.0796 4.3883 15 6 8.9528 -2.0421 5.5886 16 8 8.8453 -1.3026 6.8067 17 6 10.1239 -2.9883 5.6515 18 1 9.9697 -4.0483 5.5137 19 6 11.3924 -2.5008 5.8849 20 7 11.5802 -1.2100 6.0531 21 14 12.8440 -3.6738 5.9635 22 1 12.3697 -5.0638 5.7441 23 1 13.8280 -3.3150 4.9106 24 1 13.4886 -3.5751 7.2976 25 6 7.6513 -2.8197 5.3188 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8898 32 1 1.6767 -1.7490 -1.2490 33 1 1.6768 -0.2075 -2.1391 34 1 3.1301 -0.7217 -1.2489 35 1 3.9878 -0.4644 0.8056 36 1 3.1940 -1.8633 3.2259 37 1 5.2911 -1.8260 4.9181 38 1 5.2854 -3.3643 4.0227 39 1 7.6581 -0.6852 2.7966 40 1 7.0811 -0.2524 4.4388 41 1 9.4704 -0.1071 4.7175 42 1 9.7671 -1.5046 3.6344 43 1 9.6364 -0.7926 7.0283 44 1 12.4724 -0.8671 6.2177 45 1 6.9296 -2.6223 6.1114 46 1 7.8584 -3.8883 5.2632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829992197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:37 Heat of formation + Delta-G solvation = -85.070635 kcal Electronic energy + Delta-G solvation = -26715.924191 eV Core-core repulsion = 22834.922320 eV Total energy + Delta-G solvation = -3881.001871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84333 -39.65307 -37.93905 -36.15806 -35.51931 -34.58681 -32.04738 -31.81614 -30.04268 -28.02011 -27.82615 -27.55846 -26.30276 -24.20439 -23.31342 -21.54100 -20.64770 -19.56700 -19.40619 -18.02867 -17.39702 -17.08860 -16.22941 -15.90858 -15.38052 -15.26428 -14.93108 -14.82038 -14.47116 -14.33485 -13.95556 -13.84135 -13.47167 -13.13560 -12.85219 -12.69893 -12.44930 -12.40823 -12.15561 -12.03112 -11.72002 -11.55070 -11.43745 -11.40617 -11.28298 -11.15035 -10.90936 -10.58664 -10.47832 -10.35641 -10.22379 -9.91622 -9.64755 -9.12798 -8.56788 -8.53642 -8.04055 -7.84111 -6.17237 -4.23056 1.61725 2.10249 2.62931 3.25093 3.33513 3.38219 3.68370 4.15776 4.27468 4.34988 4.38026 4.57117 4.63921 4.85533 5.09882 5.10955 5.15251 5.26276 5.35804 5.38340 5.41544 5.43262 5.45968 5.64724 5.74839 5.75467 5.86312 6.08873 6.15775 6.28477 6.36073 6.43082 6.50859 6.72088 6.93716 7.16008 7.28652 7.30222 7.54017 7.63605 7.67336 7.72455 7.86935 8.17427 8.25215 8.78538 9.43542 9.54357 10.90626 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.035531 B = 0.002418 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.860173 B =11576.853479 C =11696.172339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 C -0.146 4.146 4 C -0.145 4.145 5 C 0.521 3.479 6 O -0.541 6.541 7 N -0.519 5.519 8 N -0.532 5.532 9 C 0.517 3.483 10 O -0.516 6.516 11 C 0.038 3.962 12 N -0.497 5.497 13 C 0.028 3.972 14 C -0.119 4.119 15 C 0.243 3.757 16 O -0.596 6.596 17 C -0.526 4.526 18 H 0.063 0.937 19 C 0.067 3.933 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.053 3.947 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.431 0.569 36 H 0.430 0.570 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.025 0.975 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.384 0.616 44 H 0.266 0.734 45 H 0.038 0.962 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.148 3.745 -12.027 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.078 4.078 3 C -0.203 4.203 4 C -0.203 4.203 5 C 0.307 3.693 6 O -0.416 6.416 7 N -0.266 5.266 8 N -0.283 5.283 9 C 0.303 3.697 10 O -0.389 6.389 11 C -0.095 4.095 12 N -0.222 5.222 13 C -0.099 4.099 14 C -0.158 4.158 15 C 0.202 3.798 16 O -0.406 6.406 17 C -0.565 4.565 18 H 0.081 0.919 19 C -0.135 4.135 20 N -0.540 5.540 21 Si 0.729 3.271 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.074 4.074 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.273 0.727 36 H 0.272 0.728 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.043 0.957 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.236 0.764 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.408 3.256 -12.407 23.263 hybrid contribution 1.126 0.192 0.733 1.357 sum -18.282 3.448 -11.674 21.964 Atomic orbital electron populations 1.21686 0.91249 1.03143 1.02426 1.20772 0.98306 0.96378 0.92387 1.21947 1.01571 0.93404 1.03407 1.21942 1.01569 1.00831 0.95959 1.20919 0.80196 0.80088 0.88119 1.90717 1.54799 1.49099 1.47025 1.44951 1.07191 1.56458 1.18034 1.45129 1.07394 1.57868 1.17922 1.21153 0.79694 0.80011 0.88803 1.90688 1.53881 1.47857 1.46453 1.22145 0.93037 1.01065 0.93252 1.64844 1.02049 1.22682 1.32646 1.23556 0.97002 0.87670 1.01625 1.23003 0.92840 1.00486 0.99482 1.19351 0.90463 0.88157 0.81785 1.86065 1.44577 1.66592 1.43375 1.21722 0.91748 0.94143 1.48839 0.91871 1.25021 0.99033 0.95312 0.94089 1.69625 1.22921 1.11935 1.49550 0.86398 0.82019 0.81160 0.77573 1.19655 1.20929 1.20968 1.22954 0.96797 1.00318 0.87315 0.91702 0.91558 0.91707 0.91829 0.90773 0.91706 0.91711 0.90783 0.91825 0.72689 0.72844 0.91510 0.87571 0.88813 0.95655 0.91804 0.91366 0.76402 0.92412 0.94346 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 7.76 37.16 0.29 -0.58 16 2 C -0.07 -0.53 0.87 -155.66 -0.14 -0.66 16 3 C -0.15 -0.86 8.37 37.16 0.31 -0.55 16 4 C -0.15 -0.84 8.37 37.15 0.31 -0.53 16 5 C 0.52 5.46 6.60 -10.99 -0.07 5.39 16 6 O -0.54 -7.31 15.82 5.55 0.09 -7.22 16 7 N -0.52 -5.59 6.04 31.22 0.19 -5.40 16 8 N -0.53 -6.31 6.26 31.22 0.20 -6.11 16 9 C 0.52 7.47 7.66 -10.98 -0.08 7.38 16 10 O -0.52 -9.02 13.36 5.55 0.07 -8.95 16 11 C 0.04 0.56 5.52 -4.98 -0.03 0.53 16 12 N -0.50 -9.67 5.26 -231.89 -1.22 -10.89 16 13 C 0.03 0.59 5.30 -1.90 -0.01 0.58 16 14 C -0.12 -2.87 5.49 -24.87 -0.14 -3.00 16 15 C 0.24 6.08 0.99 -90.42 -0.09 5.99 16 16 O -0.60 -15.60 12.93 -35.23 -0.46 -16.05 16 17 C -0.53 -14.21 8.10 -34.45 -0.28 -14.49 16 18 H 0.06 1.70 7.35 -52.48 -0.39 1.31 16 19 C 0.07 1.79 5.26 -17.82 -0.09 1.69 16 20 N -0.90 -24.30 10.88 55.43 0.60 -23.70 16 21 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.05 1.14 6.16 -2.75 -0.02 1.13 16 26 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.06 0.37 7.56 -51.93 -0.39 -0.02 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.36 7.56 -51.93 -0.39 -0.03 16 35 H 0.43 4.29 6.84 -182.59 -1.25 3.05 16 36 H 0.43 4.51 8.00 -182.59 -1.46 3.05 16 37 H 0.07 0.91 7.81 -51.93 -0.41 0.50 16 38 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.09 1.97 5.97 -51.93 -0.31 1.66 16 40 H 0.03 0.52 8.02 -51.93 -0.42 0.10 16 41 H 0.06 1.59 8.05 -51.93 -0.42 1.17 16 42 H 0.07 1.75 7.86 -51.93 -0.41 1.34 16 43 H 0.38 10.27 7.05 45.56 0.32 10.59 16 44 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.04 0.79 7.39 -51.93 -0.38 0.40 16 46 H 0.08 1.76 7.40 -51.93 -0.38 1.37 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -31.69 368.09 -8.83 -40.52 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -8.80 Total: 13.49 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.04 Total: 2.87 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.23 Total: -46.10 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.29 Total: -32.22 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.69 -8.83 -40.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829992197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.551 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds