Wall clock time and date at job start Tue Mar 31 2020 04:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47098 * 2 1 4 4 C 1.52992 * 109.47416 * 239.99678 * 2 1 3 5 5 C 1.50702 * 109.46878 * 119.99363 * 2 1 3 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 2 1 7 7 N 1.34775 * 119.99786 * 180.02562 * 5 2 1 8 8 N 1.40105 * 119.99633 * 180.02562 * 7 5 2 9 9 C 1.34777 * 119.99775 * 179.72021 * 8 7 5 10 10 O 1.21283 * 120.00222 * 0.28016 * 9 8 7 11 11 C 1.50703 * 120.00290 * 180.27576 * 9 8 7 12 12 N 1.46896 * 109.47254 * 180.02562 * 11 9 8 13 13 C 1.48525 * 111.00193 * 52.60384 * 12 11 9 14 14 C 1.54940 * 103.22735 * 159.71854 * 13 12 11 15 15 C 1.54596 * 102.92265 * 322.58855 * 14 13 12 16 16 O 1.42906 * 110.30489 * 263.04302 * 15 14 13 17 17 C 1.50689 * 110.31052 * 140.87296 * 15 14 13 18 18 H 1.08004 * 120.00236 * 244.28157 * 17 15 14 19 19 C 1.37878 * 120.00207 * 64.27960 * 17 15 14 20 20 N 1.31515 * 120.00171 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 120.00200 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47102 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46961 * 120.00209 * 21 19 17 24 24 H 1.48491 * 109.47400 * 240.00107 * 21 19 17 25 25 C 1.47907 * 110.99703 * 170.00417 * 12 11 9 26 26 H 1.09003 * 109.46965 * 300.00653 * 1 2 3 27 27 H 1.09003 * 109.47064 * 60.00512 * 1 2 3 28 28 H 1.08998 * 109.46943 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46985 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46745 * 299.99683 * 3 2 1 31 31 H 1.08994 * 109.47484 * 59.99273 * 3 2 1 32 32 H 1.09004 * 109.46913 * 300.00154 * 4 2 1 33 33 H 1.08994 * 109.47286 * 60.00105 * 4 2 1 34 34 H 1.09001 * 109.47300 * 180.02562 * 4 2 1 35 35 H 0.97000 * 120.00523 * 359.97438 * 7 5 2 36 36 H 0.97001 * 120.00437 * 0.02562 * 8 7 5 37 37 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 38 38 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 39 39 H 1.08999 * 110.66733 * 278.15758 * 13 12 11 40 40 H 1.09000 * 110.66754 * 41.28792 * 13 12 11 41 41 H 1.08999 * 110.72549 * 204.22245 * 14 13 12 42 42 H 1.09004 * 110.87044 * 81.01583 * 14 13 12 43 43 H 0.96701 * 113.99368 * 295.71243 * 16 15 14 44 44 H 0.96991 * 120.00526 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.91349 * 333.50437 * 25 12 11 46 46 H 1.08993 * 109.92082 * 94.60305 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 8 1.2442 -1.1715 2.0287 7 7 3.3574 -0.8330 1.4441 8 7 3.8243 -1.4938 2.5879 9 6 5.1493 -1.6214 2.7987 10 8 5.9376 -1.1598 2.0008 11 6 5.6517 -2.3376 4.0258 12 7 7.1206 -2.3412 4.0237 13 6 7.6561 -0.9668 3.8496 14 6 9.1044 -1.0796 4.3883 15 6 8.9528 -2.0421 5.5886 16 8 8.8453 -1.3026 6.8067 17 6 10.1239 -2.9883 5.6515 18 1 9.9697 -4.0483 5.5137 19 6 11.3924 -2.5008 5.8849 20 7 11.5802 -1.2100 6.0531 21 14 12.8440 -3.6738 5.9635 22 1 12.3697 -5.0638 5.7441 23 1 13.8280 -3.3150 4.9106 24 1 13.4886 -3.5751 7.2976 25 6 7.6513 -2.8197 5.3188 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8898 32 1 1.6767 -1.7490 -1.2490 33 1 1.6768 -0.2075 -2.1391 34 1 3.1301 -0.7217 -1.2489 35 1 3.9878 -0.4644 0.8056 36 1 3.1940 -1.8633 3.2259 37 1 5.2911 -1.8260 4.9181 38 1 5.2854 -3.3643 4.0227 39 1 7.6581 -0.6852 2.7966 40 1 7.0811 -0.2524 4.4388 41 1 9.4704 -0.1071 4.7175 42 1 9.7671 -1.5046 3.6344 43 1 9.6364 -0.7926 7.0283 44 1 12.4724 -0.8671 6.2177 45 1 6.9296 -2.6223 6.1114 46 1 7.8584 -3.8883 5.2632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829992197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:36 Heat of formation + Delta-G solvation = -110.941038 kcal Electronic energy + Delta-G solvation = -26717.046016 eV Core-core repulsion = 22834.922320 eV Total energy + Delta-G solvation = -3882.123696 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.79405 -40.82622 -39.53376 -36.94026 -36.63753 -36.19957 -34.11159 -32.98103 -31.53353 -29.82696 -28.27067 -28.19284 -27.75996 -25.91362 -24.22823 -22.69406 -22.15486 -21.28081 -20.45669 -19.12458 -19.02228 -18.28367 -17.24760 -17.00743 -16.88831 -16.79768 -16.35145 -15.97106 -15.71107 -15.68174 -14.89439 -14.86923 -14.75423 -14.50342 -14.18395 -13.83610 -13.39841 -13.36167 -13.21513 -13.11238 -12.99026 -12.96107 -12.74958 -12.65189 -12.46153 -12.37044 -12.28934 -12.10085 -11.95795 -11.92183 -11.88333 -11.25215 -11.09710 -10.82232 -10.58451 -10.04687 -9.54699 -9.34957 -8.20184 -6.33373 0.68706 1.16646 1.40765 1.43785 1.54768 1.60770 2.40578 2.74357 3.03312 3.14434 3.34572 3.71914 3.80126 3.85857 3.90423 4.17460 4.24533 4.25130 4.32637 4.44715 4.52542 4.62861 4.68827 4.68973 4.80315 4.89806 4.91643 4.93367 4.97223 5.10468 5.20249 5.29718 5.30332 5.33329 5.40429 5.54251 5.60237 5.61135 5.77476 5.91802 6.06874 6.16054 6.41890 6.71594 6.77409 7.23945 7.36189 7.44922 8.86281 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.035531 B = 0.002418 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.860173 B =11576.853479 C =11696.172339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 C -0.145 4.145 4 C -0.144 4.144 5 C 0.519 3.481 6 O -0.573 6.573 7 N -0.518 5.518 8 N -0.522 5.522 9 C 0.521 3.479 10 O -0.550 6.550 11 C 0.034 3.966 12 N -0.505 5.505 13 C 0.046 3.954 14 C -0.113 4.113 15 C 0.225 3.775 16 O -0.601 6.601 17 C -0.550 4.550 18 H 0.058 0.942 19 C 0.024 3.976 20 N -0.917 5.917 21 Si 0.961 3.039 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.279 1.279 25 C 0.062 3.938 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.435 0.565 36 H 0.438 0.562 37 H 0.085 0.915 38 H 0.138 0.862 39 H 0.093 0.907 40 H 0.029 0.971 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.378 0.622 44 H 0.268 0.732 45 H 0.049 0.951 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.356 3.500 -13.072 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.201 4.201 5 C 0.307 3.693 6 O -0.451 6.451 7 N -0.266 5.266 8 N -0.272 5.272 9 C 0.308 3.692 10 O -0.426 6.426 11 C -0.098 4.098 12 N -0.231 5.231 13 C -0.082 4.082 14 C -0.152 4.152 15 C 0.185 3.815 16 O -0.410 6.410 17 C -0.588 4.588 18 H 0.076 0.924 19 C -0.176 4.176 20 N -0.558 5.558 21 Si 0.787 3.213 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.205 1.205 25 C -0.065 4.065 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.278 0.722 36 H 0.281 0.719 37 H 0.103 0.897 38 H 0.155 0.845 39 H 0.111 0.889 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.228 0.772 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.657 3.007 -13.453 24.834 hybrid contribution 1.425 0.285 1.046 1.791 sum -19.232 3.292 -12.407 23.123 Atomic orbital electron populations 1.21706 0.90966 1.02630 1.03107 1.20856 0.98416 0.96877 0.91169 1.21971 1.01647 0.92424 1.04157 1.21965 1.01659 1.00547 0.95964 1.21688 0.79557 0.79380 0.88664 1.90701 1.55468 1.50528 1.48380 1.45148 1.07544 1.56273 1.17607 1.44927 1.06818 1.57087 1.18375 1.20990 0.80152 0.79669 0.88353 1.90676 1.54871 1.49484 1.47551 1.22280 0.89945 1.03407 0.94137 1.64731 1.05328 1.21549 1.31461 1.23320 0.94808 0.88732 1.01305 1.22807 0.94613 0.99079 0.98716 1.19620 0.92059 0.88328 0.81450 1.86056 1.44170 1.66642 1.44147 1.21996 0.93007 0.94290 1.49503 0.92385 1.25735 1.01328 0.96785 0.93746 1.69710 1.23477 1.13052 1.49546 0.85459 0.78945 0.79320 0.77576 1.19367 1.20705 1.20462 1.22775 0.95428 0.99751 0.88576 0.92936 0.88945 0.92828 0.91746 0.88492 0.92527 0.92389 0.88520 0.91720 0.72162 0.71917 0.89717 0.84458 0.88854 0.95313 0.93600 0.93777 0.77156 0.92232 0.93272 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 7.76 71.98 0.56 -0.97 16 2 C -0.07 -0.86 0.87 -52.93 -0.05 -0.91 16 3 C -0.14 -1.40 8.37 71.98 0.60 -0.80 16 4 C -0.14 -1.34 8.37 71.98 0.60 -0.74 16 5 C 0.52 10.32 6.60 87.66 0.58 10.90 16 6 O -0.57 -15.12 15.82 -3.04 -0.05 -15.17 16 7 N -0.52 -10.49 6.04 -173.53 -1.05 -11.54 16 8 N -0.52 -11.56 6.26 -173.53 -1.09 -12.64 16 9 C 0.52 14.22 7.66 87.66 0.67 14.90 16 10 O -0.55 -18.68 13.36 -3.04 -0.04 -18.72 16 11 C 0.03 0.93 5.52 85.56 0.47 1.40 16 12 N -0.51 -19.06 5.26 -887.58 -4.67 -23.73 16 13 C 0.05 1.88 5.30 86.65 0.46 2.34 16 14 C -0.11 -5.55 5.49 31.80 0.17 -5.38 16 15 C 0.23 11.36 0.99 -10.66 -0.01 11.35 16 16 O -0.60 -31.73 12.93 -148.98 -1.93 -33.65 16 17 C -0.55 -29.95 8.10 25.60 0.21 -29.74 16 18 H 0.06 3.14 7.35 -2.91 -0.02 3.11 16 19 C 0.02 1.27 5.26 84.65 0.45 1.71 16 20 N -0.92 -50.15 10.88 21.45 0.23 -49.91 16 21 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 C 0.06 2.61 6.16 86.45 0.53 3.14 16 26 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 27 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 29 H 0.06 0.62 7.56 -2.39 -0.02 0.61 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.60 7.56 -2.39 -0.02 0.58 16 35 H 0.44 8.13 6.84 -213.32 -1.46 6.67 16 36 H 0.44 8.42 8.00 -213.32 -1.71 6.72 16 37 H 0.09 2.06 7.81 -2.39 -0.02 2.04 16 38 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.09 3.91 5.97 -2.39 -0.01 3.90 16 40 H 0.03 1.16 8.02 -2.39 -0.02 1.14 16 41 H 0.05 2.35 8.05 -2.39 -0.02 2.33 16 42 H 0.04 2.32 7.86 -2.38 -0.02 2.30 16 43 H 0.38 20.64 7.05 -74.06 -0.52 20.12 16 44 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 45 H 0.05 1.93 7.39 -2.39 -0.02 1.91 16 46 H 0.08 3.46 7.40 -2.39 -0.02 3.44 16 Total: -1.00 -68.25 368.09 -3.99 -72.24 By element: Atomic # 1 Polarization: 43.59 SS G_CDS: -2.67 Total: 40.91 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 5.25 Total: 7.23 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -6.57 Total: -97.83 kcal Atomic # 8 Polarization: -65.53 SS G_CDS: -2.02 Total: -67.54 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -68.25 -3.99 -72.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829992197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.704 kcal (2) G-P(sol) polarization free energy of solvation -68.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds