Wall clock time and date at job start Tue Mar 31 2020 04:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41596 * 113.99936 * 2 1 4 4 C 1.46500 * 120.00199 * 269.99965 * 3 2 1 5 5 C 1.34777 * 119.99898 * 90.00312 * 3 2 1 6 6 O 1.21279 * 119.99992 * 180.02562 * 5 3 2 7 7 C 1.50702 * 120.00111 * 359.97438 * 5 3 2 8 8 H 1.08994 * 109.47177 * 300.00346 * 7 5 3 9 9 C 1.52993 * 109.46744 * 60.00524 * 7 5 3 10 10 N 1.46497 * 109.47052 * 180.02562 * 7 5 3 11 11 C 1.34769 * 119.99974 * 155.00320 * 10 7 5 12 12 O 1.21589 * 120.00105 * 354.88680 * 11 10 7 13 13 N 1.34780 * 119.99977 * 174.89008 * 11 10 7 14 14 C 1.46922 * 120.63191 * 5.04628 * 13 11 10 15 15 C 1.53189 * 108.77424 * 233.58616 * 14 13 11 16 16 C 1.53044 * 109.31442 * 305.36207 * 15 14 13 17 17 C 1.53039 * 109.53719 * 61.36700 * 16 15 14 18 18 H 1.09000 * 109.49808 * 58.58735 * 17 16 15 19 19 C 1.50697 * 109.50142 * 178.68312 * 17 16 15 20 20 H 1.07997 * 119.99542 * 35.06213 * 19 17 16 21 21 C 1.37877 * 120.00480 * 215.06259 * 19 17 16 22 22 N 1.31509 * 120.00463 * 174.98381 * 21 19 17 23 23 Si 1.86798 * 119.99706 * 354.98106 * 21 19 17 24 24 H 1.48497 * 109.47354 * 94.95136 * 23 21 19 25 25 H 1.48501 * 109.47421 * 214.95416 * 23 21 19 26 26 H 1.48502 * 109.47448 * 334.95023 * 23 21 19 27 27 C 1.46932 * 120.62959 * 184.76473 * 13 11 10 28 28 H 1.09003 * 109.47042 * 59.99993 * 1 2 3 29 29 H 1.08999 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47361 * 300.00076 * 1 2 3 31 31 H 1.08995 * 109.47499 * 270.00161 * 4 3 2 32 32 H 1.09000 * 109.47264 * 30.00212 * 4 3 2 33 33 H 1.09002 * 109.47302 * 150.00200 * 4 3 2 34 34 H 1.09001 * 109.47224 * 299.99891 * 9 7 5 35 35 H 1.08994 * 109.47429 * 59.99976 * 9 7 5 36 36 H 1.09002 * 109.47259 * 180.02562 * 9 7 5 37 37 H 0.96998 * 120.00211 * 335.00037 * 10 7 5 38 38 H 1.08996 * 109.58418 * 353.37024 * 14 13 11 39 39 H 1.08995 * 109.58723 * 113.65895 * 14 13 11 40 40 H 1.09000 * 109.49958 * 65.31373 * 15 14 13 41 41 H 1.09000 * 109.49739 * 185.41403 * 15 14 13 42 42 H 1.09001 * 109.46190 * 181.38626 * 16 15 14 43 43 H 1.08994 * 109.46154 * 301.36189 * 16 15 14 44 44 H 0.96993 * 120.00311 * 179.97438 * 22 21 19 45 45 H 1.08993 * 109.58692 * 246.20325 * 27 13 11 46 46 H 1.09002 * 109.58768 * 6.63130 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 2.2791 1.9091 1.1672 6 8 2.7719 3.0173 1.1672 7 6 1.9721 1.2210 2.4723 8 1 0.9042 1.0108 2.5299 9 6 2.7552 -0.0909 2.5536 10 7 2.3589 2.0909 3.5858 11 6 1.7590 1.9572 4.7852 12 8 0.8337 1.1798 4.9189 13 7 2.1848 2.6852 5.8365 14 6 3.2265 3.7072 5.6666 15 6 4.3514 3.4362 6.6705 16 6 3.7642 3.3660 8.0820 17 6 2.7585 2.2151 8.1613 18 1 3.2558 1.2793 7.9063 19 6 2.2048 2.1263 9.5600 20 1 2.0443 3.0261 10.1353 21 6 1.9030 0.8964 10.1053 22 7 1.5136 0.8103 11.3585 23 14 2.0472 -0.6476 9.0639 24 1 3.3769 -1.2710 9.2843 25 1 0.9810 -1.6065 9.4499 26 1 1.8984 -0.2931 7.6296 27 6 1.6115 2.4761 7.1731 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.3155 1.7108 -1.5834 32 1 1.5939 1.6337 -2.0284 33 1 2.2209 3.0419 -1.1384 34 1 2.4671 -0.7379 1.7251 35 1 3.8231 0.1193 2.4960 36 1 2.5329 -0.5889 3.4973 37 1 3.0468 2.7630 3.4599 38 1 3.6227 3.6599 4.6523 39 1 2.8025 4.6948 5.8477 40 1 4.8337 2.4889 6.4296 41 1 5.0847 4.2412 6.6213 42 1 4.5660 3.1977 8.8010 43 1 3.2605 4.3046 8.3129 44 1 1.3010 -0.0548 11.7419 45 1 1.0591 3.3652 7.4769 46 1 0.9419 1.6163 7.1532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858988673.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:52 Heat of formation + Delta-G solvation = -47.254203 kcal Electronic energy + Delta-G solvation = -27653.916353 eV Core-core repulsion = 23774.554325 eV Total energy + Delta-G solvation = -3879.362028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71016 -39.65846 -37.83468 -37.10270 -34.94053 -33.46511 -33.36439 -31.93811 -30.78864 -30.04717 -27.80184 -26.76865 -25.18481 -24.98967 -23.37013 -21.84166 -20.78647 -20.04145 -19.23361 -18.37472 -17.40221 -17.11273 -16.70245 -16.55542 -15.85282 -15.29506 -15.05991 -14.78592 -14.70528 -14.19286 -13.98022 -13.75973 -13.63081 -13.57171 -13.12293 -12.93892 -12.85042 -12.57736 -12.48953 -12.37301 -12.21838 -12.17818 -11.76327 -11.24062 -11.04387 -10.92646 -10.59920 -10.51361 -10.18548 -10.00949 -9.75802 -9.66909 -9.51834 -9.31634 -9.07666 -9.02753 -8.58974 -7.91192 -6.08431 -4.08795 1.39309 2.05438 2.87829 3.33797 3.44276 3.45715 3.56374 3.64943 4.16912 4.46541 4.53678 4.78807 4.79699 4.81809 4.95966 4.99405 5.06329 5.17879 5.22597 5.24781 5.28053 5.41579 5.55524 5.63451 5.70387 5.85928 5.90218 6.04848 6.14469 6.21124 6.29454 6.45904 6.50181 6.66643 6.70164 6.80417 6.90722 6.98392 7.26898 7.35969 7.46030 7.54721 7.78201 8.29913 8.51772 8.94319 8.98165 9.55378 11.04073 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020278 B = 0.003665 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.463428 B = 7638.612889 C = 8535.030749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 O -0.137 6.137 3 N -0.480 5.480 4 C 0.086 3.914 5 C 0.525 3.475 6 O -0.517 6.517 7 C 0.151 3.849 8 H 0.112 0.888 9 C -0.160 4.160 10 N -0.741 5.741 11 C 0.707 3.293 12 O -0.594 6.594 13 N -0.622 5.622 14 C 0.114 3.886 15 C -0.137 4.137 16 C -0.103 4.103 17 C 0.006 3.994 18 H 0.034 0.966 19 C -0.513 4.513 20 H 0.075 0.925 21 C 0.075 3.925 22 N -0.897 5.897 23 Si 0.869 3.131 24 H -0.280 1.280 25 H -0.288 1.288 26 H -0.253 1.253 27 C 0.129 3.871 28 H 0.055 0.945 29 H 0.112 0.888 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.402 0.598 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.264 0.736 45 H 0.058 0.942 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 1.338 -25.763 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 O -0.141 6.141 3 N -0.260 5.260 4 C -0.054 4.054 5 C 0.314 3.686 6 O -0.393 6.393 7 C 0.042 3.958 8 H 0.130 0.870 9 C -0.219 4.219 10 N -0.402 5.402 11 C 0.409 3.591 12 O -0.473 6.473 13 N -0.358 5.358 14 C -0.009 4.009 15 C -0.175 4.175 16 C -0.141 4.141 17 C -0.014 4.014 18 H 0.053 0.947 19 C -0.551 4.551 20 H 0.093 0.907 21 C -0.127 4.127 22 N -0.534 5.534 23 Si 0.696 3.304 24 H -0.206 1.206 25 H -0.214 1.214 26 H -0.177 1.177 27 C 0.008 3.992 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.241 0.759 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.759 1.078 -25.492 25.576 hybrid contribution 0.002 -0.610 -0.618 0.868 sum 1.761 0.468 -26.110 26.174 Atomic orbital electron populations 1.23485 0.81195 1.04514 1.01759 1.90665 1.20485 1.06291 1.96697 1.49884 1.59029 1.10515 1.06582 1.21924 1.01815 0.98045 0.83593 1.20996 0.77485 0.85099 0.85067 1.90741 1.43949 1.18673 1.85902 1.20421 1.02306 0.90376 0.82746 0.87012 1.22212 1.00010 0.95429 1.04220 1.45081 1.44761 1.40957 1.09362 1.15823 0.81950 0.81313 0.80062 1.90880 1.31022 1.41761 1.83593 1.47736 1.40832 1.38386 1.08853 1.21572 0.89111 0.91659 0.98592 1.22005 0.96887 1.01373 0.97227 1.21549 0.99168 0.99946 0.93423 1.19568 0.92229 0.94644 0.94913 0.94737 1.20905 1.43242 0.94507 0.96432 0.90702 1.25065 0.94127 0.98973 0.94570 1.69902 1.45602 1.25183 1.12719 0.86960 0.77758 0.83243 0.82474 1.20623 1.21410 1.17660 1.22490 0.98021 1.01530 0.77183 0.92644 0.86961 0.92332 0.91375 0.90391 0.89325 0.89921 0.92216 0.90650 0.75899 0.91636 0.91575 0.92146 0.91784 0.92203 0.92757 0.92599 0.92325 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 11.44 101.05 1.16 1.08 16 2 O -0.14 -1.18 8.79 -11.47 -0.10 -1.28 16 3 N -0.48 -4.58 3.34 -67.08 -0.22 -4.81 16 4 C 0.09 0.58 10.82 59.85 0.65 1.23 16 5 C 0.52 6.37 7.17 -10.98 -0.08 6.29 16 6 O -0.52 -7.32 15.42 5.56 0.09 -7.24 16 7 C 0.15 2.01 2.62 -69.09 -0.18 1.83 16 8 H 0.11 1.55 6.49 -51.93 -0.34 1.21 16 9 C -0.16 -1.96 9.33 37.15 0.35 -1.61 16 10 N -0.74 -11.37 4.87 -59.82 -0.29 -11.66 16 11 C 0.71 13.59 8.26 -86.92 -0.72 12.87 16 12 O -0.59 -13.44 15.41 5.29 0.08 -13.36 16 13 N -0.62 -11.77 2.97 -178.24 -0.53 -12.30 16 14 C 0.11 1.71 6.43 -3.71 -0.02 1.69 16 15 C -0.14 -2.09 6.08 -26.61 -0.16 -2.26 16 16 C -0.10 -1.97 5.15 -26.69 -0.14 -2.11 16 17 C 0.01 0.15 1.79 -91.43 -0.16 -0.02 16 18 H 0.03 0.84 5.59 -51.93 -0.29 0.55 16 19 C -0.51 -14.13 8.86 -34.44 -0.31 -14.43 16 20 H 0.07 2.22 8.06 -52.49 -0.42 1.79 16 21 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 22 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 23 Si 0.87 22.21 26.64 -169.99 -4.53 17.68 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 26 H -0.25 -6.50 6.01 56.52 0.34 -6.16 16 27 C 0.13 2.85 5.53 -3.48 -0.02 2.83 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.43 7.13 -51.93 -0.37 0.06 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.63 7.42 -51.93 -0.39 0.25 16 34 H 0.08 0.87 6.03 -51.93 -0.31 0.55 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.40 5.66 5.25 -40.82 -0.21 5.45 16 38 H 0.07 0.83 5.57 -51.93 -0.29 0.54 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.08 2.07 5.96 -51.93 -0.31 1.76 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -34.43 364.06 -6.19 -40.61 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.20 Total: 4.00 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 0.26 Total: 9.47 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.27 Total: -55.38 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.07 Total: -21.87 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.53 Total: 17.68 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.43 -6.19 -40.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858988673.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.643 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds