Wall clock time and date at job start Tue Mar 31 2020 04:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41596 * 113.99936 * 2 1 4 4 C 1.46500 * 120.00199 * 269.99965 * 3 2 1 5 5 C 1.34777 * 119.99898 * 90.00312 * 3 2 1 6 6 O 1.21279 * 119.99992 * 180.02562 * 5 3 2 7 7 C 1.50702 * 120.00111 * 359.97438 * 5 3 2 8 8 H 1.08994 * 109.47177 * 300.00346 * 7 5 3 9 9 C 1.52993 * 109.46744 * 60.00524 * 7 5 3 10 10 N 1.46497 * 109.47052 * 180.02562 * 7 5 3 11 11 C 1.34769 * 119.99974 * 155.00320 * 10 7 5 12 12 O 1.21589 * 120.00105 * 354.88680 * 11 10 7 13 13 N 1.34780 * 119.99977 * 174.89008 * 11 10 7 14 14 C 1.46922 * 120.63191 * 5.04628 * 13 11 10 15 15 C 1.53189 * 108.77424 * 233.58616 * 14 13 11 16 16 C 1.53044 * 109.31442 * 305.36207 * 15 14 13 17 17 C 1.53039 * 109.53719 * 61.36700 * 16 15 14 18 18 H 1.09000 * 109.49808 * 58.58735 * 17 16 15 19 19 C 1.50697 * 109.50142 * 178.68312 * 17 16 15 20 20 H 1.07997 * 119.99542 * 35.06213 * 19 17 16 21 21 C 1.37877 * 120.00480 * 215.06259 * 19 17 16 22 22 N 1.31509 * 120.00463 * 174.98381 * 21 19 17 23 23 Si 1.86798 * 119.99706 * 354.98106 * 21 19 17 24 24 H 1.48497 * 109.47354 * 94.95136 * 23 21 19 25 25 H 1.48501 * 109.47421 * 214.95416 * 23 21 19 26 26 H 1.48502 * 109.47448 * 334.95023 * 23 21 19 27 27 C 1.46932 * 120.62959 * 184.76473 * 13 11 10 28 28 H 1.09003 * 109.47042 * 59.99993 * 1 2 3 29 29 H 1.08999 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47361 * 300.00076 * 1 2 3 31 31 H 1.08995 * 109.47499 * 270.00161 * 4 3 2 32 32 H 1.09000 * 109.47264 * 30.00212 * 4 3 2 33 33 H 1.09002 * 109.47302 * 150.00200 * 4 3 2 34 34 H 1.09001 * 109.47224 * 299.99891 * 9 7 5 35 35 H 1.08994 * 109.47429 * 59.99976 * 9 7 5 36 36 H 1.09002 * 109.47259 * 180.02562 * 9 7 5 37 37 H 0.96998 * 120.00211 * 335.00037 * 10 7 5 38 38 H 1.08996 * 109.58418 * 353.37024 * 14 13 11 39 39 H 1.08995 * 109.58723 * 113.65895 * 14 13 11 40 40 H 1.09000 * 109.49958 * 65.31373 * 15 14 13 41 41 H 1.09000 * 109.49739 * 185.41403 * 15 14 13 42 42 H 1.09001 * 109.46190 * 181.38626 * 16 15 14 43 43 H 1.08994 * 109.46154 * 301.36189 * 16 15 14 44 44 H 0.96993 * 120.00311 * 179.97438 * 22 21 19 45 45 H 1.08993 * 109.58692 * 246.20325 * 27 13 11 46 46 H 1.09002 * 109.58768 * 6.63130 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 2.2791 1.9091 1.1672 6 8 2.7719 3.0173 1.1672 7 6 1.9721 1.2210 2.4723 8 1 0.9042 1.0108 2.5299 9 6 2.7552 -0.0909 2.5536 10 7 2.3589 2.0909 3.5858 11 6 1.7590 1.9572 4.7852 12 8 0.8337 1.1798 4.9189 13 7 2.1848 2.6852 5.8365 14 6 3.2265 3.7072 5.6666 15 6 4.3514 3.4362 6.6705 16 6 3.7642 3.3660 8.0820 17 6 2.7585 2.2151 8.1613 18 1 3.2558 1.2793 7.9063 19 6 2.2048 2.1263 9.5600 20 1 2.0443 3.0261 10.1353 21 6 1.9030 0.8964 10.1053 22 7 1.5136 0.8103 11.3585 23 14 2.0472 -0.6476 9.0639 24 1 3.3769 -1.2710 9.2843 25 1 0.9810 -1.6065 9.4499 26 1 1.8984 -0.2931 7.6296 27 6 1.6115 2.4761 7.1731 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.3155 1.7108 -1.5834 32 1 1.5939 1.6337 -2.0284 33 1 2.2209 3.0419 -1.1384 34 1 2.4671 -0.7379 1.7251 35 1 3.8231 0.1193 2.4960 36 1 2.5329 -0.5889 3.4973 37 1 3.0468 2.7630 3.4599 38 1 3.6227 3.6599 4.6523 39 1 2.8025 4.6948 5.8477 40 1 4.8337 2.4889 6.4296 41 1 5.0847 4.2412 6.6213 42 1 4.5660 3.1977 8.8010 43 1 3.2605 4.3046 8.3129 44 1 1.3010 -0.0548 11.7419 45 1 1.0591 3.3652 7.4769 46 1 0.9419 1.6163 7.1532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858988673.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:51 Heat of formation + Delta-G solvation = -71.728371 kcal Electronic energy + Delta-G solvation = -27654.977633 eV Core-core repulsion = 23774.554325 eV Total energy + Delta-G solvation = -3880.423307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.85169 -40.88409 -38.72301 -38.48148 -36.22913 -35.25271 -34.16823 -33.68038 -32.25645 -31.45794 -28.40310 -27.45210 -27.08242 -26.38549 -24.50034 -23.39398 -21.80381 -21.40636 -20.67019 -19.73369 -18.91801 -18.30837 -18.08402 -17.35299 -16.99001 -16.63475 -16.41869 -16.07693 -15.68041 -15.37300 -15.33373 -15.24691 -15.00086 -14.69879 -14.41693 -14.28606 -14.03456 -13.81870 -13.68854 -13.51125 -13.33145 -13.07608 -12.96431 -12.77270 -12.64091 -12.56409 -12.03426 -11.78794 -11.66681 -11.60701 -11.35468 -11.10112 -11.09600 -10.94885 -10.76983 -10.38900 -10.22172 -9.44591 -8.33489 -6.35324 0.69052 1.13608 1.26510 1.34233 1.48600 1.57417 2.06138 2.31006 2.64512 2.87735 3.05593 3.80381 3.93518 3.97223 4.00575 4.13165 4.16962 4.31650 4.34044 4.39190 4.47049 4.53000 4.56003 4.64457 4.68871 4.71693 4.74541 4.77449 4.81500 4.97288 5.02467 5.09153 5.12207 5.19091 5.23068 5.31107 5.43635 5.59170 5.65121 5.70780 5.96890 6.13739 6.30936 6.68785 6.73247 6.93119 7.31229 7.47968 8.83043 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020278 B = 0.003665 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.463428 B = 7638.612889 C = 8535.030749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 O -0.144 6.144 3 N -0.475 5.475 4 C 0.082 3.918 5 C 0.528 3.472 6 O -0.541 6.541 7 C 0.146 3.854 8 H 0.104 0.896 9 C -0.151 4.151 10 N -0.726 5.726 11 C 0.703 3.297 12 O -0.634 6.634 13 N -0.626 5.626 14 C 0.110 3.890 15 C -0.127 4.127 16 C -0.100 4.100 17 C 0.006 3.994 18 H 0.023 0.977 19 C -0.509 4.509 20 H 0.044 0.956 21 C 0.023 3.977 22 N -0.942 5.942 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.289 1.289 26 H -0.259 1.259 27 C 0.141 3.859 28 H 0.072 0.928 29 H 0.134 0.866 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.410 0.590 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.104 0.896 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.266 0.734 45 H 0.059 0.941 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.455 1.592 -29.114 29.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 O -0.148 6.148 3 N -0.254 5.254 4 C -0.057 4.057 5 C 0.316 3.684 6 O -0.419 6.419 7 C 0.037 3.963 8 H 0.121 0.879 9 C -0.209 4.209 10 N -0.386 5.386 11 C 0.405 3.595 12 O -0.516 6.516 13 N -0.361 5.361 14 C -0.012 4.012 15 C -0.165 4.165 16 C -0.138 4.138 17 C -0.013 4.013 18 H 0.041 0.959 19 C -0.547 4.547 20 H 0.062 0.938 21 C -0.175 4.175 22 N -0.582 5.582 23 Si 0.756 3.244 24 H -0.193 1.193 25 H -0.215 1.215 26 H -0.183 1.183 27 C 0.018 3.982 28 H 0.091 0.909 29 H 0.151 0.849 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.251 0.749 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.122 0.878 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.132 1.343 -28.914 29.114 hybrid contribution -0.463 -0.644 0.364 0.872 sum 2.669 0.699 -28.550 28.683 Atomic orbital electron populations 1.23672 0.79802 1.05973 1.01894 1.90649 1.21884 1.05543 1.96735 1.49876 1.58119 1.10711 1.06657 1.22154 1.03220 0.97622 0.82710 1.20613 0.77664 0.84804 0.85291 1.90728 1.45343 1.19468 1.86345 1.20564 1.02068 0.90693 0.82985 0.87873 1.22128 1.00266 0.94910 1.03627 1.44922 1.44098 1.41055 1.08552 1.15950 0.81737 0.80847 0.80984 1.90849 1.32889 1.43441 1.84394 1.47625 1.41696 1.39322 1.07495 1.21882 0.87976 0.91145 1.00205 1.21942 0.97474 1.02905 0.94139 1.21451 0.97966 0.98055 0.96356 1.19521 0.93352 0.96030 0.92446 0.95860 1.21210 1.42020 0.93157 0.98343 0.93788 1.25772 0.94413 1.01930 0.95428 1.70017 1.47877 1.25955 1.14382 0.85987 0.78068 0.79975 0.80395 1.19326 1.21503 1.18275 1.21943 0.96957 1.00170 0.79085 0.90920 0.84851 0.93739 0.90402 0.87784 0.89772 0.88095 0.91477 0.93055 0.74908 0.88727 0.89862 0.92406 0.87753 0.92760 0.92421 0.92481 0.92256 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.17 11.44 113.37 1.30 1.13 16 2 O -0.14 -2.12 8.79 -38.78 -0.34 -2.46 16 3 N -0.48 -7.93 3.34 -484.53 -1.62 -9.55 16 4 C 0.08 0.87 10.82 127.77 1.38 2.25 16 5 C 0.53 11.83 7.17 87.66 0.63 12.46 16 6 O -0.54 -14.24 15.42 -3.03 -0.05 -14.28 16 7 C 0.15 3.70 2.62 44.24 0.12 3.82 16 8 H 0.10 2.82 6.49 -2.39 -0.02 2.81 16 9 C -0.15 -3.48 9.33 71.98 0.67 -2.81 16 10 N -0.73 -21.18 4.87 -461.44 -2.25 -23.43 16 11 C 0.70 26.57 8.26 179.06 1.48 28.05 16 12 O -0.63 -29.03 15.41 -4.00 -0.06 -29.09 16 13 N -0.63 -22.94 2.97 -836.08 -2.48 -25.42 16 14 C 0.11 2.94 6.43 86.36 0.56 3.49 16 15 C -0.13 -3.45 6.08 30.67 0.19 -3.26 16 16 C -0.10 -3.70 5.15 30.62 0.16 -3.54 16 17 C 0.01 0.30 1.79 -11.32 -0.02 0.28 16 18 H 0.02 1.13 5.59 -2.39 -0.01 1.12 16 19 C -0.51 -28.80 8.86 25.60 0.23 -28.57 16 20 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 21 C 0.02 1.34 5.47 84.66 0.46 1.81 16 22 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 23 Si 0.93 47.25 26.64 68.60 1.83 49.07 16 24 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 25 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 26 H -0.26 -13.29 6.01 99.48 0.60 -12.69 16 27 C 0.14 6.30 5.53 86.51 0.48 6.78 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.04 0.60 7.13 -2.39 -0.02 0.58 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 1.01 7.42 -2.39 -0.02 1.00 16 34 H 0.10 1.93 6.03 -2.39 -0.01 1.91 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.41 10.52 5.25 -92.71 -0.49 10.03 16 38 H 0.09 2.02 5.57 -2.39 -0.01 2.01 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 45 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 46 H 0.05 2.54 5.96 -2.39 -0.01 2.53 16 Total: -1.00 -77.17 364.06 3.35 -73.82 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.39 Total: 18.52 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 7.62 Total: 21.87 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -6.04 Total: -117.45 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -0.45 Total: -45.83 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.83 Total: 49.07 kcal Total: -77.17 3.35 -73.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858988673.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.091 kcal (2) G-P(sol) polarization free energy of solvation -77.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds