Wall clock time and date at job start Tue Mar 31 2020 04:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99902 * 2 1 4 4 H 1.09004 * 109.47219 * 329.99561 * 3 2 1 5 5 C 1.52999 * 109.47714 * 89.99647 * 3 2 1 6 6 C 1.50704 * 109.47122 * 209.99642 * 3 2 1 7 7 O 1.21282 * 119.99783 * 350.83253 * 6 3 2 8 8 N 1.34770 * 120.00059 * 170.55104 * 6 3 2 9 9 C 1.47758 * 121.66041 * 355.91321 * 8 6 3 10 10 C 1.52974 * 108.82326 * 270.98141 * 9 8 6 11 11 C 1.50706 * 109.53620 * 306.58387 * 10 9 8 12 12 O 1.21283 * 120.45792 * 295.50064 * 11 10 9 13 13 N 1.36132 * 119.07437 * 115.52237 * 11 10 9 14 14 C 1.47659 * 116.57415 * 176.88261 * 13 11 10 15 15 C 1.52979 * 108.91311 * 97.50273 * 14 13 11 16 16 N 1.47739 * 108.82101 * 305.17536 * 15 14 13 17 17 C 1.36938 * 121.65862 * 275.72733 * 16 15 14 18 18 H 1.08003 * 120.00171 * 33.53993 * 17 16 15 19 19 C 1.38814 * 120.00198 * 213.54524 * 17 16 15 20 20 N 1.31617 * 119.99739 * 18.87113 * 19 17 16 21 21 Si 1.86800 * 120.00226 * 198.87611 * 19 17 16 22 22 H 1.48496 * 109.46821 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46981 * 119.99501 * 21 19 17 24 24 H 1.48492 * 109.46917 * 240.00003 * 21 19 17 25 25 C 1.47766 * 116.68795 * 95.70598 * 16 15 14 26 26 C 1.47747 * 121.65986 * 175.61920 * 8 6 3 27 27 H 1.08999 * 109.47301 * 300.00746 * 1 2 3 28 28 H 1.08998 * 109.46658 * 60.00330 * 1 2 3 29 29 H 1.08998 * 109.46812 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46804 * 296.64294 * 5 3 2 31 31 H 1.09006 * 109.46602 * 56.63685 * 5 3 2 32 32 H 1.08994 * 109.47183 * 176.64191 * 5 3 2 33 33 H 1.08991 * 109.57932 * 30.78291 * 9 8 6 34 34 H 1.09004 * 109.57943 * 151.04843 * 9 8 6 35 35 H 1.09002 * 109.46129 * 66.59730 * 10 9 8 36 36 H 1.09004 * 109.46448 * 186.56040 * 10 9 8 37 37 H 0.96993 * 121.71049 * 356.91044 * 13 11 10 38 38 H 1.08998 * 109.55911 * 217.32792 * 14 13 11 39 39 H 1.09000 * 109.56302 * 337.66973 * 14 13 11 40 40 H 1.08997 * 109.58067 * 64.97984 * 15 14 13 41 41 H 1.09003 * 109.57566 * 185.37528 * 15 14 13 42 42 H 0.97006 * 120.00230 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.58135 * 341.72030 * 25 16 15 44 44 H 1.09002 * 109.58319 * 102.12821 * 25 16 15 45 45 H 1.08991 * 109.58597 * 172.20238 * 26 8 6 46 46 H 1.09008 * 109.57967 * 292.61165 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2176 1.7715 1.4424 6 6 3.3387 1.2639 -0.7104 7 8 3.8255 0.1983 -1.0240 8 7 3.9831 2.4111 -1.0021 9 6 3.3811 3.7313 -0.7229 10 6 2.5574 4.1648 -1.9369 11 6 3.4139 4.1024 -3.1754 12 8 4.3773 4.8296 -3.2939 13 7 3.0909 3.2188 -4.1593 14 6 3.9242 3.2532 -5.3777 15 6 4.9870 2.1569 -5.2828 16 7 5.7420 2.3327 -4.0252 17 6 6.8008 3.1967 -3.9372 18 1 6.8004 4.1115 -4.5114 19 6 7.8745 2.8968 -3.1102 20 7 8.0683 1.6593 -2.7060 21 14 9.0444 4.2495 -2.5708 22 1 8.6104 5.5425 -3.1582 23 1 9.0351 4.3504 -1.0893 24 1 10.4179 3.9309 -3.0367 25 6 5.2977 1.5301 -2.8667 26 6 5.3292 2.4111 -1.6110 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.2510 1.8589 1.9385 31 1 2.8343 1.0463 1.9734 32 1 2.7153 2.7413 1.4429 33 1 2.7338 3.6601 0.1510 34 1 4.1697 4.4600 -0.5351 35 1 1.7027 3.4982 -2.0527 36 1 2.2044 5.1856 -1.7906 37 1 2.3511 2.5987 -4.0649 38 1 3.2982 3.0799 -6.2530 39 1 4.4094 4.2258 -5.4607 40 1 4.5047 1.1795 -5.2859 41 1 5.6673 2.2334 -6.1311 42 1 8.8189 1.4496 -2.1283 43 1 4.2824 1.1724 -3.0379 44 1 5.9683 0.6814 -2.7315 45 1 5.6045 3.4285 -1.8887 46 1 6.0529 2.0165 -0.8977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070944640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:36 Heat of formation + Delta-G solvation = -64.017204 kcal Electronic energy + Delta-G solvation = -29671.021229 eV Core-core repulsion = 25790.932303 eV Total energy + Delta-G solvation = -3880.088926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.14517 -38.87814 -37.46831 -35.74060 -35.41676 -33.68939 -31.74742 -31.33496 -30.39839 -28.95117 -26.94208 -26.54235 -24.98379 -23.67176 -23.45041 -21.73358 -20.14821 -19.76097 -18.85240 -17.37848 -16.80770 -16.40932 -16.24978 -15.83455 -15.29747 -15.13678 -14.86061 -14.48094 -14.13022 -13.98075 -13.60849 -13.39140 -13.35259 -13.22145 -12.79850 -12.73234 -12.56165 -12.32864 -11.98283 -11.79061 -11.65937 -11.48871 -11.22753 -11.10668 -11.03913 -10.77003 -10.41829 -10.24775 -9.99444 -9.94212 -9.77436 -9.68986 -9.08867 -8.99279 -8.63344 -8.22049 -8.09526 -6.38911 -5.55884 -3.09576 2.99555 3.04144 3.31495 3.45220 3.54106 3.59916 3.85469 3.94903 4.56525 4.63251 4.72801 4.89341 4.96235 5.10009 5.14322 5.21591 5.24225 5.40390 5.47892 5.50649 5.54524 5.57395 5.59979 5.68374 5.82256 6.02981 6.06468 6.18872 6.26365 6.47332 6.57257 6.64634 6.81268 6.87829 6.97289 7.02466 7.16840 7.49340 7.74525 8.03089 8.06946 8.13776 8.56216 8.66671 8.94876 9.34719 9.95558 10.61961 11.43344 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.005857 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.962961 B = 4779.520593 C = 5266.658974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.069 3.931 4 H 0.079 0.921 5 C -0.175 4.175 6 C 0.511 3.489 7 O -0.509 6.509 8 N -0.613 5.613 9 C 0.106 3.894 10 C -0.161 4.161 11 C 0.518 3.482 12 O -0.505 6.505 13 N -0.728 5.728 14 C 0.090 3.910 15 C 0.126 3.874 16 N -0.583 5.583 17 C -0.224 4.224 18 H 0.061 0.939 19 C 0.004 3.996 20 N -0.892 5.892 21 Si 0.887 3.113 22 H -0.276 1.276 23 H -0.291 1.291 24 H -0.293 1.293 25 C 0.170 3.830 26 C 0.112 3.888 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.392 0.608 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.052 0.948 42 H 0.250 0.750 43 H 0.030 0.970 44 H 0.053 0.947 45 H 0.110 0.890 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.366 3.124 4.866 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C 0.007 3.993 4 H 0.096 0.904 5 C -0.232 4.232 6 C 0.297 3.703 7 O -0.382 6.382 8 N -0.350 5.350 9 C -0.018 4.018 10 C -0.202 4.202 11 C 0.303 3.697 12 O -0.379 6.379 13 N -0.381 5.381 14 C -0.037 4.037 15 C -0.002 4.002 16 N -0.306 5.306 17 C -0.354 4.354 18 H 0.079 0.921 19 C -0.195 4.195 20 N -0.536 5.536 21 Si 0.717 3.283 22 H -0.201 1.201 23 H -0.218 1.218 24 H -0.220 1.220 25 C 0.045 3.955 26 C -0.008 4.008 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.225 0.775 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.128 0.872 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.126 2.802 4.709 17.981 hybrid contribution 0.000 0.623 0.566 0.842 sum -17.126 3.425 5.274 18.244 Atomic orbital electron populations 1.22848 0.81180 1.03008 0.99734 1.88082 1.19146 1.25462 1.94911 1.22018 0.94293 0.86268 0.96680 0.90360 1.22348 1.03001 1.02555 0.95334 1.20072 0.86090 0.84191 0.79983 1.90752 1.66972 1.29031 1.51496 1.49034 1.19989 1.04096 1.61862 1.21938 0.98172 0.86106 0.95544 1.22224 0.98924 1.03498 0.95601 1.20348 0.84905 0.80593 0.83854 1.90766 1.26416 1.42211 1.78460 1.46303 1.34483 1.38760 1.18537 1.22387 0.93395 1.03303 0.84590 1.21429 0.93037 0.94607 0.91152 1.44427 1.33070 1.48966 1.04103 1.18844 0.93808 0.97594 1.25154 0.92092 1.25108 0.96517 0.95248 1.02628 1.70097 1.29988 1.16160 1.37319 0.86444 0.80933 0.82670 0.78256 1.20058 1.21813 1.22014 1.21207 0.95392 0.93701 0.85181 1.22711 0.78102 1.04747 0.95241 0.94105 0.94023 0.89349 0.91568 0.90918 0.90386 0.89786 0.88960 0.91043 0.88118 0.77493 0.92918 0.89837 0.94498 0.92998 0.94018 0.95124 0.92925 0.87232 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.36 -5.12 9.90 -54.97 -0.54 -5.66 16 3 C 0.07 0.89 2.33 -27.88 -0.06 0.82 16 4 H 0.08 0.78 6.55 -51.93 -0.34 0.44 16 5 C -0.17 -1.82 9.19 37.16 0.34 -1.48 16 6 C 0.51 9.13 6.49 -10.99 -0.07 9.06 16 7 O -0.51 -11.65 14.88 -14.19 -0.21 -11.86 16 8 N -0.61 -10.71 2.39 -171.41 -0.41 -11.12 16 9 C 0.11 1.39 5.18 -3.37 -0.02 1.37 16 10 C -0.16 -1.93 6.17 -27.89 -0.17 -2.10 16 11 C 0.52 8.75 4.52 -10.37 -0.05 8.71 16 12 O -0.51 -10.86 13.59 5.55 0.08 -10.79 16 13 N -0.73 -11.38 4.58 -59.15 -0.27 -11.65 16 14 C 0.09 1.53 6.56 -3.42 -0.02 1.51 16 15 C 0.13 2.59 6.10 -3.37 -0.02 2.57 16 16 N -0.58 -14.38 1.80 -170.96 -0.31 -14.68 16 17 C -0.22 -6.13 7.32 -15.06 -0.11 -6.24 16 18 H 0.06 1.74 7.90 -52.48 -0.41 1.33 16 19 C 0.00 0.12 4.16 -17.43 -0.07 0.05 16 20 N -0.89 -26.42 11.32 55.49 0.63 -25.79 16 21 Si 0.89 22.44 29.59 -169.99 -5.03 17.41 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 C 0.17 4.19 3.49 -3.13 -0.01 4.18 16 26 C 0.11 2.57 3.96 -3.14 -0.01 2.55 16 27 H 0.04 0.29 7.95 -51.93 -0.41 -0.12 16 28 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.52 7.95 -51.93 -0.41 0.11 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.72 5.56 -51.93 -0.29 0.44 16 33 H 0.08 0.79 4.53 -51.93 -0.24 0.55 16 34 H 0.09 1.30 7.81 -51.93 -0.41 0.90 16 35 H 0.07 0.69 7.12 -51.93 -0.37 0.32 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.39 5.16 8.73 -40.82 -0.36 4.80 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.64 7.03 -51.93 -0.37 1.27 16 40 H 0.04 0.73 7.83 -51.93 -0.41 0.33 16 41 H 0.05 1.08 8.13 -51.93 -0.42 0.66 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.03 0.72 5.80 -51.93 -0.30 0.42 16 44 H 0.05 1.56 6.98 -51.93 -0.36 1.20 16 45 H 0.11 2.72 4.39 -51.93 -0.23 2.49 16 46 H 0.05 1.39 8.10 -51.92 -0.42 0.97 16 LS Contribution 346.97 15.07 5.23 5.23 Total: -1.00 -35.63 346.97 -7.02 -42.65 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.99 Total: 3.92 kcal Atomic # 6 Polarization: 21.54 SS G_CDS: 0.81 Total: 22.36 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.36 Total: -63.25 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.68 Total: -28.31 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.63 -7.02 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070944640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.370 kcal (2) G-P(sol) polarization free energy of solvation -35.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds