Wall clock time and date at job start Tue Mar 31 2020 04:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99902 * 2 1 4 4 H 1.09004 * 109.47219 * 329.99561 * 3 2 1 5 5 C 1.52999 * 109.47714 * 89.99647 * 3 2 1 6 6 C 1.50704 * 109.47122 * 209.99642 * 3 2 1 7 7 O 1.21282 * 119.99783 * 350.83253 * 6 3 2 8 8 N 1.34770 * 120.00059 * 170.55104 * 6 3 2 9 9 C 1.47758 * 121.66041 * 355.91321 * 8 6 3 10 10 C 1.52974 * 108.82326 * 270.98141 * 9 8 6 11 11 C 1.50706 * 109.53620 * 306.58387 * 10 9 8 12 12 O 1.21283 * 120.45792 * 295.50064 * 11 10 9 13 13 N 1.36132 * 119.07437 * 115.52237 * 11 10 9 14 14 C 1.47659 * 116.57415 * 176.88261 * 13 11 10 15 15 C 1.52979 * 108.91311 * 97.50273 * 14 13 11 16 16 N 1.47739 * 108.82101 * 305.17536 * 15 14 13 17 17 C 1.36938 * 121.65862 * 275.72733 * 16 15 14 18 18 H 1.08003 * 120.00171 * 33.53993 * 17 16 15 19 19 C 1.38814 * 120.00198 * 213.54524 * 17 16 15 20 20 N 1.31617 * 119.99739 * 18.87113 * 19 17 16 21 21 Si 1.86800 * 120.00226 * 198.87611 * 19 17 16 22 22 H 1.48496 * 109.46821 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46981 * 119.99501 * 21 19 17 24 24 H 1.48492 * 109.46917 * 240.00003 * 21 19 17 25 25 C 1.47766 * 116.68795 * 95.70598 * 16 15 14 26 26 C 1.47747 * 121.65986 * 175.61920 * 8 6 3 27 27 H 1.08999 * 109.47301 * 300.00746 * 1 2 3 28 28 H 1.08998 * 109.46658 * 60.00330 * 1 2 3 29 29 H 1.08998 * 109.46812 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46804 * 296.64294 * 5 3 2 31 31 H 1.09006 * 109.46602 * 56.63685 * 5 3 2 32 32 H 1.08994 * 109.47183 * 176.64191 * 5 3 2 33 33 H 1.08991 * 109.57932 * 30.78291 * 9 8 6 34 34 H 1.09004 * 109.57943 * 151.04843 * 9 8 6 35 35 H 1.09002 * 109.46129 * 66.59730 * 10 9 8 36 36 H 1.09004 * 109.46448 * 186.56040 * 10 9 8 37 37 H 0.96993 * 121.71049 * 356.91044 * 13 11 10 38 38 H 1.08998 * 109.55911 * 217.32792 * 14 13 11 39 39 H 1.09000 * 109.56302 * 337.66973 * 14 13 11 40 40 H 1.08997 * 109.58067 * 64.97984 * 15 14 13 41 41 H 1.09003 * 109.57566 * 185.37528 * 15 14 13 42 42 H 0.97006 * 120.00230 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.58135 * 341.72030 * 25 16 15 44 44 H 1.09002 * 109.58319 * 102.12821 * 25 16 15 45 45 H 1.08991 * 109.58597 * 172.20238 * 26 8 6 46 46 H 1.09008 * 109.57967 * 292.61165 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2176 1.7715 1.4424 6 6 3.3387 1.2639 -0.7104 7 8 3.8255 0.1983 -1.0240 8 7 3.9831 2.4111 -1.0021 9 6 3.3811 3.7313 -0.7229 10 6 2.5574 4.1648 -1.9369 11 6 3.4139 4.1024 -3.1754 12 8 4.3773 4.8296 -3.2939 13 7 3.0909 3.2188 -4.1593 14 6 3.9242 3.2532 -5.3777 15 6 4.9870 2.1569 -5.2828 16 7 5.7420 2.3327 -4.0252 17 6 6.8008 3.1967 -3.9372 18 1 6.8004 4.1115 -4.5114 19 6 7.8745 2.8968 -3.1102 20 7 8.0683 1.6593 -2.7060 21 14 9.0444 4.2495 -2.5708 22 1 8.6104 5.5425 -3.1582 23 1 9.0351 4.3504 -1.0893 24 1 10.4179 3.9309 -3.0367 25 6 5.2977 1.5301 -2.8667 26 6 5.3292 2.4111 -1.6110 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.2510 1.8589 1.9385 31 1 2.8343 1.0463 1.9734 32 1 2.7153 2.7413 1.4429 33 1 2.7338 3.6601 0.1510 34 1 4.1697 4.4600 -0.5351 35 1 1.7027 3.4982 -2.0527 36 1 2.2044 5.1856 -1.7906 37 1 2.3511 2.5987 -4.0649 38 1 3.2982 3.0799 -6.2530 39 1 4.4094 4.2258 -5.4607 40 1 4.5047 1.1795 -5.2859 41 1 5.6673 2.2334 -6.1311 42 1 8.8189 1.4496 -2.1283 43 1 4.2824 1.1724 -3.0379 44 1 5.9683 0.6814 -2.7315 45 1 5.6045 3.4285 -1.8887 46 1 6.0529 2.0165 -0.8977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070944640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:36 Heat of formation + Delta-G solvation = -91.383087 kcal Electronic energy + Delta-G solvation = -29672.207903 eV Core-core repulsion = 25790.932303 eV Total energy + Delta-G solvation = -3881.275600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48951 -40.19199 -38.58260 -37.54445 -36.84125 -35.24922 -33.26370 -32.76244 -31.83668 -30.52566 -28.33145 -27.63394 -26.59284 -25.14311 -24.71942 -23.16379 -21.98553 -21.13723 -20.16103 -18.72161 -18.24298 -17.94841 -17.49607 -17.22109 -16.73277 -16.37038 -16.29640 -16.07455 -15.59536 -15.38182 -15.09745 -14.96714 -14.68414 -14.47102 -14.26312 -13.91636 -13.81403 -13.53815 -13.31610 -13.18615 -13.09682 -12.83218 -12.78873 -12.59065 -12.42179 -12.25901 -12.04484 -11.91261 -11.88470 -11.80254 -11.62078 -10.88252 -10.63933 -10.45476 -10.33791 -9.84223 -9.62785 -8.47084 -7.71156 -5.28536 1.38880 1.42761 1.54341 1.64903 1.78356 2.04069 2.52517 2.66462 2.97840 3.33480 3.48715 3.69817 3.86009 3.91020 4.03988 4.12305 4.32158 4.39586 4.48342 4.52298 4.55850 4.60973 4.63165 4.66018 4.71353 4.76102 4.81804 4.84281 4.88310 4.92765 4.96710 5.06353 5.16549 5.25662 5.30175 5.64288 5.71615 5.78222 5.80401 6.17349 6.43652 6.59588 6.91870 7.18837 7.27753 7.69559 7.87633 8.50290 9.24065 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.005857 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.962961 B = 4779.520593 C = 5266.658974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.399 6.399 3 C 0.079 3.921 4 H 0.122 0.878 5 C -0.171 4.171 6 C 0.503 3.497 7 O -0.572 6.572 8 N -0.611 5.611 9 C 0.101 3.899 10 C -0.151 4.151 11 C 0.506 3.494 12 O -0.558 6.558 13 N -0.722 5.722 14 C 0.104 3.896 15 C 0.118 3.882 16 N -0.594 5.594 17 C -0.211 4.211 18 H 0.048 0.952 19 C -0.042 4.042 20 N -0.925 5.925 21 Si 0.940 3.060 22 H -0.272 1.272 23 H -0.292 1.292 24 H -0.293 1.293 25 C 0.194 3.806 26 C 0.137 3.863 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.135 0.865 37 H 0.408 0.592 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.243 0.757 43 H 0.040 0.960 44 H -0.007 1.007 45 H 0.092 0.908 46 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.551 4.868 5.705 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.318 6.318 3 C 0.019 3.981 4 H 0.140 0.860 5 C -0.229 4.229 6 C 0.292 3.708 7 O -0.450 6.450 8 N -0.346 5.346 9 C -0.021 4.021 10 C -0.192 4.192 11 C 0.293 3.707 12 O -0.435 6.435 13 N -0.375 5.375 14 C -0.023 4.023 15 C -0.009 4.009 16 N -0.317 5.317 17 C -0.342 4.342 18 H 0.066 0.934 19 C -0.238 4.238 20 N -0.571 5.571 21 Si 0.769 3.231 22 H -0.197 1.197 23 H -0.219 1.219 24 H -0.221 1.221 25 C 0.068 3.932 26 C 0.014 3.986 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.152 0.848 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.153 0.847 37 H 0.244 0.756 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.011 0.989 45 H 0.110 0.890 46 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -21.402 4.575 5.539 22.576 hybrid contribution 1.219 0.031 0.237 1.243 sum -20.182 4.606 5.776 21.492 Atomic orbital electron populations 1.23115 0.78480 1.04084 1.01781 1.88046 1.22120 1.26407 1.95182 1.22038 0.91395 0.87046 0.97665 0.86033 1.22370 1.04805 1.02193 0.93490 1.21235 0.87707 0.82919 0.78933 1.90728 1.68972 1.31354 1.53995 1.48959 1.18020 1.06451 1.61169 1.22296 0.98632 0.83098 0.98091 1.22266 0.98558 1.06601 0.91810 1.21327 0.84701 0.79553 0.85107 1.90751 1.28985 1.44218 1.79577 1.46303 1.34387 1.38870 1.17971 1.22057 0.93121 1.00023 0.87073 1.21668 0.93661 0.96517 0.89024 1.44568 1.33183 1.48300 1.05675 1.18817 0.94061 0.97208 1.24080 0.93388 1.25642 0.98134 0.96638 1.03370 1.70251 1.30596 1.17815 1.38468 0.85604 0.79171 0.80648 0.77627 1.19673 1.21913 1.22079 1.20783 0.93995 0.92153 0.86248 1.21976 0.80697 1.02356 0.93592 0.91523 0.92317 0.89044 0.87814 0.93422 0.89091 0.84803 0.90367 0.87382 0.84668 0.75607 0.88424 0.92404 0.93764 0.93787 0.94800 0.94168 0.98892 0.88982 0.97098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.52 16 2 O -0.40 -10.31 9.90 -130.10 -1.29 -11.60 16 3 C 0.08 1.75 2.33 29.85 0.07 1.82 16 4 H 0.12 1.60 6.55 -2.39 -0.02 1.59 16 5 C -0.17 -2.84 9.19 71.98 0.66 -2.18 16 6 C 0.50 17.48 6.49 87.66 0.57 18.05 16 7 O -0.57 -27.06 14.88 15.84 0.24 -26.83 16 8 N -0.61 -20.82 2.39 -814.63 -1.95 -22.77 16 9 C 0.10 2.28 5.18 86.13 0.45 2.73 16 10 C -0.15 -2.92 6.17 29.84 0.18 -2.73 16 11 C 0.51 15.98 4.52 87.44 0.40 16.38 16 12 O -0.56 -23.75 13.59 -3.04 -0.04 -23.79 16 13 N -0.72 -20.79 4.58 -458.67 -2.10 -22.89 16 14 C 0.10 3.39 6.56 86.15 0.57 3.96 16 15 C 0.12 4.88 6.10 86.14 0.53 5.41 16 16 N -0.59 -30.31 1.80 -694.78 -1.25 -31.56 16 17 C -0.21 -11.96 7.32 84.03 0.61 -11.34 16 18 H 0.05 2.84 7.90 -2.91 -0.02 2.82 16 19 C -0.04 -2.45 4.16 84.86 0.35 -2.10 16 20 N -0.93 -57.99 11.32 21.65 0.25 -57.75 16 21 Si 0.94 47.92 29.59 68.60 2.03 49.95 16 22 H -0.27 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.29 -14.80 7.11 99.48 0.71 -14.10 16 24 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 25 C 0.19 9.99 3.49 86.28 0.30 10.30 16 26 C 0.14 6.51 3.96 86.28 0.34 6.85 16 27 H 0.07 0.60 7.95 -2.39 -0.02 0.58 16 28 H 0.06 0.62 8.08 -2.39 -0.02 0.60 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 1.00 7.95 -2.39 -0.02 0.98 16 31 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.09 1.24 5.56 -2.39 -0.01 1.23 16 33 H 0.13 1.73 4.53 -2.39 -0.01 1.72 16 34 H 0.08 2.05 7.81 -2.38 -0.02 2.03 16 35 H 0.11 1.33 7.12 -2.39 -0.02 1.31 16 36 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.41 9.20 8.73 -92.71 -0.81 8.39 16 38 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.06 2.24 7.03 -2.39 -0.02 2.22 16 40 H 0.04 1.75 7.83 -2.39 -0.02 1.73 16 41 H 0.04 1.87 8.13 -2.39 -0.02 1.85 16 42 H 0.24 14.97 8.31 -92.70 -0.77 14.20 16 43 H 0.04 1.95 5.80 -2.38 -0.01 1.94 16 44 H -0.01 -0.44 6.98 -2.39 -0.02 -0.45 16 45 H 0.09 4.74 4.39 -2.39 -0.01 4.73 16 46 H 0.01 0.59 8.10 -2.38 -0.02 0.57 16 Total: -1.00 -87.68 346.97 2.33 -85.35 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.19 Total: 13.24 kcal Atomic # 6 Polarization: 42.40 SS G_CDS: 6.25 Total: 48.65 kcal Atomic # 7 Polarization: -129.92 SS G_CDS: -5.05 Total: -134.97 kcal Atomic # 8 Polarization: -61.13 SS G_CDS: -1.09 Total: -62.22 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -87.68 2.33 -85.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070944640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.036 kcal (2) G-P(sol) polarization free energy of solvation -87.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds