Wall clock time and date at job start Tue Mar 31 2020 04:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47553 * 2 1 4 4 C 1.50706 * 109.46737 * 119.99858 * 2 1 3 5 5 O 1.21281 * 119.99968 * 101.37688 * 4 2 1 6 6 N 1.34775 * 120.00080 * 281.37392 * 4 2 1 7 7 C 1.46495 * 120.00016 * 180.02562 * 6 4 2 8 8 H 1.09001 * 110.64101 * 31.85878 * 7 6 4 9 9 C 1.54334 * 110.85493 * 268.69105 * 7 6 4 10 10 N 1.47020 * 107.27004 * 219.67655 * 9 7 6 11 11 C 1.36928 * 125.64832 * 178.84557 * 10 9 7 12 12 H 1.07995 * 120.00266 * 346.43384 * 11 10 9 13 13 C 1.38818 * 119.99770 * 166.42841 * 11 10 9 14 14 N 1.31611 * 120.00140 * 350.75931 * 13 11 10 15 15 Si 1.86806 * 119.99921 * 170.76248 * 13 11 10 16 16 H 1.48505 * 109.46786 * 265.12474 * 15 13 11 17 17 H 1.48498 * 109.46902 * 25.12138 * 15 13 11 18 18 H 1.48496 * 109.46937 * 145.12401 * 15 13 11 19 19 C 1.47431 * 108.70121 * 358.58209 * 10 9 7 20 20 C 1.54914 * 104.83267 * 24.35787 * 19 10 9 21 21 H 1.08998 * 111.00022 * 81.06459 * 20 19 10 22 22 O 1.42901 * 111.00454 * 204.91745 * 20 19 10 23 23 N 1.46901 * 109.47193 * 239.99364 * 2 1 3 24 24 C 1.47013 * 110.99619 * 75.07118 * 23 2 1 25 25 C 1.53098 * 109.25686 * 177.60722 * 24 23 2 26 26 O 1.43016 * 109.25852 * 56.85170 * 25 24 23 27 27 C 1.43021 * 113.73500 * 301.32661 * 26 25 24 28 28 C 1.47013 * 110.99925 * 311.43714 * 23 2 1 29 29 H 1.08998 * 109.46723 * 59.99823 * 1 2 3 30 30 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46937 * 300.00461 * 1 2 3 32 32 H 0.97001 * 119.99950 * 0.02562 * 6 4 2 33 33 H 1.08995 * 109.98998 * 100.19607 * 9 7 6 34 34 H 1.09010 * 109.77218 * 339.03276 * 9 7 6 35 35 H 0.97000 * 120.00628 * 180.02562 * 14 13 11 36 36 H 1.08998 * 110.36569 * 143.19702 * 19 10 9 37 37 H 1.09001 * 110.36234 * 265.41181 * 19 10 9 38 38 H 0.96702 * 113.99706 * 298.55180 * 22 20 19 39 39 H 1.09006 * 109.50664 * 297.54036 * 24 23 2 40 40 H 1.08996 * 109.51056 * 57.67160 * 24 23 2 41 41 H 1.08989 * 109.50699 * 296.91303 * 25 24 23 42 42 H 1.09000 * 109.50538 * 176.77864 * 25 24 23 43 43 H 1.09002 * 109.50842 * 298.73635 * 27 26 25 44 44 H 1.08998 * 109.50840 * 178.60921 * 27 26 25 45 45 H 1.09002 * 109.50577 * 302.32118 * 28 23 2 46 46 H 1.08998 * 109.50952 * 62.45544 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 2.4297 -1.8535 1.1511 6 7 2.0398 -0.0755 2.4193 7 6 2.5285 -0.7659 3.6154 8 1 3.3156 -1.4739 3.3557 9 6 1.3732 -1.4802 4.3481 10 7 1.5926 -1.2985 5.7905 11 6 0.7759 -1.7630 6.7866 12 1 -0.2161 -2.1183 6.5500 13 6 1.2231 -1.7771 8.1007 14 7 2.4854 -1.5187 8.3690 15 14 0.0333 -2.1630 9.4881 16 1 -0.4967 -0.8958 10.0525 17 1 -1.0906 -2.9796 8.9635 18 1 0.7415 -2.9204 10.5512 19 6 2.8408 -0.5389 5.9868 20 6 3.0338 0.2540 4.6700 21 1 2.4229 1.1567 4.6645 22 8 4.4116 0.5690 4.4590 23 7 2.0197 -0.6926 -1.1994 24 6 1.8619 0.1485 -2.3947 25 6 2.4378 -0.5858 -3.6084 26 8 1.7860 -1.8513 -3.7470 27 6 1.9200 -2.6964 -2.6011 28 6 1.3389 -1.9835 -1.3771 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7216 0.8387 2.4830 33 1 1.3771 -2.5424 4.1034 34 1 0.4215 -1.0345 4.0587 35 1 2.7981 -1.5289 9.2872 36 1 2.7402 0.1446 6.8299 37 1 3.6772 -1.2189 6.1482 38 1 4.7978 1.1259 5.1488 39 1 0.8037 0.3510 -2.5602 40 1 2.3949 1.0884 -2.2514 41 1 3.5072 -0.7408 -3.4663 42 1 2.2716 0.0093 -4.5064 43 1 2.9745 -2.9128 -2.4297 44 1 1.3797 -3.6277 -2.7704 45 1 1.4903 -2.5998 -0.4909 46 1 0.2724 -1.8151 -1.5263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078292170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:38 Heat of formation + Delta-G solvation = -84.148321 kcal Electronic energy + Delta-G solvation = -27350.260221 eV Core-core repulsion = 23469.298345 eV Total energy + Delta-G solvation = -3880.961877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.51389 -39.19847 -37.88461 -36.06165 -35.09842 -34.07303 -31.95633 -31.41624 -30.92740 -28.38846 -27.13228 -26.89478 -24.77505 -24.23398 -23.64391 -20.93810 -20.67027 -20.06327 -19.74761 -17.39379 -17.17355 -16.72572 -16.68018 -16.08197 -15.66689 -15.29562 -15.18276 -15.01825 -14.73651 -14.54924 -14.10185 -13.87216 -13.73172 -13.34134 -12.96810 -12.73793 -12.57372 -12.34003 -12.25594 -12.09866 -11.93428 -11.56834 -11.47188 -11.27622 -11.26467 -10.97390 -10.87731 -10.71852 -10.19482 -10.05090 -9.99798 -9.84903 -9.56996 -9.28425 -8.77239 -8.69914 -8.48984 -6.90246 -5.84524 -3.19994 2.75814 3.07875 3.34507 3.40432 3.42612 3.64158 3.79018 4.36833 4.56134 4.58562 4.61901 4.75189 4.83287 4.91773 4.96359 5.01100 5.12941 5.22786 5.31756 5.35058 5.36764 5.43732 5.51744 5.57369 5.58051 5.61967 5.72831 5.81207 5.86891 5.89545 6.05987 6.11565 6.45900 6.63731 6.67185 6.74752 6.91347 6.96502 7.18351 7.41840 7.65132 7.70515 8.04415 8.15009 8.42654 9.07565 9.69213 10.35327 11.28556 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025700 B = 0.002879 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.223329 B = 9722.770009 C =10210.939099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.065 3.935 3 H 0.103 0.897 4 C 0.523 3.477 5 O -0.525 6.525 6 N -0.714 5.714 7 C 0.144 3.856 8 H 0.102 0.898 9 C 0.130 3.870 10 N -0.597 5.597 11 C -0.233 4.233 12 H 0.078 0.922 13 C -0.004 4.004 14 N -0.917 5.917 15 Si 0.914 3.086 16 H -0.288 1.288 17 H -0.279 1.279 18 H -0.290 1.290 19 C 0.150 3.850 20 C 0.066 3.934 21 H 0.061 0.939 22 O -0.564 6.564 23 N -0.515 5.515 24 C 0.016 3.984 25 C 0.065 3.935 26 O -0.390 6.390 27 C 0.065 3.935 28 C 0.007 3.993 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.396 0.604 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.377 0.623 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 7.487 -19.719 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.047 4.047 3 H 0.121 0.879 4 C 0.308 3.692 5 O -0.401 6.401 6 N -0.365 5.365 7 C 0.039 3.961 8 H 0.120 0.880 9 C 0.003 3.997 10 N -0.325 5.325 11 C -0.361 4.361 12 H 0.096 0.904 13 C -0.201 4.201 14 N -0.563 5.563 15 Si 0.744 3.256 16 H -0.215 1.215 17 H -0.205 1.205 18 H -0.216 1.216 19 C 0.024 3.976 20 C 0.006 3.994 21 H 0.079 0.921 22 O -0.369 6.369 23 N -0.239 5.239 24 C -0.113 4.113 25 C -0.012 4.012 26 O -0.308 6.308 27 C -0.012 4.012 28 C -0.121 4.121 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.230 0.770 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.224 0.776 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.115 0.885 45 H 0.132 0.868 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.740 6.083 -20.201 21.110 hybrid contribution -1.371 0.919 1.588 2.290 sum -2.111 7.001 -18.613 19.998 Atomic orbital electron populations 1.22371 0.94811 1.03650 1.03206 1.21623 0.94560 0.98594 0.89913 0.87914 1.20261 0.78031 0.86972 0.83917 1.90633 1.46386 1.17765 1.85295 1.45938 1.65529 1.17220 1.07795 1.21971 0.96799 0.94357 0.82954 0.87955 1.21650 0.94683 0.97625 0.85770 1.44264 1.25590 1.63337 0.99326 1.19035 0.94497 1.36830 0.85788 0.90422 1.24901 0.96118 1.01392 0.97736 1.69928 1.13023 1.54743 1.18620 0.86080 0.79878 0.77821 0.81860 1.21530 1.20454 1.21629 1.21989 0.89724 0.93857 0.91989 1.23592 0.81870 0.96416 0.97542 0.92149 1.86436 1.25046 1.73883 1.51536 1.62076 1.56913 1.03752 1.01197 1.22844 1.00310 0.97183 0.90920 1.22621 0.96804 0.84734 0.97021 1.87958 1.76125 1.27508 1.39233 1.22692 1.01273 0.92983 0.84238 1.23107 0.96085 0.91667 1.01201 0.91518 0.91171 0.90982 0.76974 0.94875 0.95321 0.93523 0.91270 0.93917 0.77582 0.93707 0.89641 0.92218 0.88579 0.92089 0.88488 0.86836 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.31 37.16 0.31 -1.38 16 2 C 0.07 0.71 2.70 -68.86 -0.19 0.52 16 3 H 0.10 0.91 7.94 -51.93 -0.41 0.50 16 4 C 0.52 7.75 7.00 -10.98 -0.08 7.67 16 5 O -0.53 -9.77 13.79 5.56 0.08 -9.69 16 6 N -0.71 -10.34 5.11 -52.02 -0.27 -10.61 16 7 C 0.14 2.66 3.04 -66.09 -0.20 2.46 16 8 H 0.10 2.16 7.55 -51.93 -0.39 1.77 16 9 C 0.13 2.76 7.00 -3.06 -0.02 2.74 16 10 N -0.60 -15.01 3.39 -170.06 -0.58 -15.59 16 11 C -0.23 -6.40 10.22 -15.06 -0.15 -6.56 16 12 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 13 C 0.00 -0.12 5.39 -17.43 -0.09 -0.21 16 14 N -0.92 -26.29 10.81 55.49 0.60 -25.69 16 15 Si 0.91 21.63 29.56 -169.99 -5.03 16.60 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 C 0.15 3.49 5.11 -2.52 -0.01 3.48 16 20 C 0.07 1.20 4.06 -24.58 -0.10 1.10 16 21 H 0.06 0.99 8.01 -51.93 -0.42 0.58 16 22 O -0.56 -9.48 13.47 -35.23 -0.47 -9.96 16 23 N -0.51 -5.91 4.47 -227.72 -1.02 -6.92 16 24 C 0.02 0.14 5.44 -3.71 -0.02 0.12 16 25 C 0.07 0.58 7.01 37.21 0.26 0.84 16 26 O -0.39 -4.39 10.83 -35.23 -0.38 -4.77 16 27 C 0.06 0.70 7.01 37.21 0.26 0.97 16 28 C 0.01 0.08 4.53 -3.71 -0.02 0.06 16 29 H 0.07 0.53 6.95 -51.93 -0.36 0.16 16 30 H 0.07 0.74 6.37 -51.93 -0.33 0.41 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.40 4.57 8.56 -40.82 -0.35 4.22 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.58 8.03 -51.92 -0.42 0.17 16 35 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.07 1.72 7.16 -51.93 -0.37 1.35 16 37 H 0.04 1.11 8.00 -51.93 -0.42 0.70 16 38 H 0.38 4.81 9.11 45.56 0.42 5.22 16 39 H 0.04 0.38 6.94 -51.93 -0.36 0.02 16 40 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 41 H 0.06 0.54 8.14 -51.94 -0.42 0.12 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.11 1.61 5.75 -51.93 -0.30 1.31 16 46 H 0.04 0.48 6.36 -51.93 -0.33 0.15 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -33.37 359.36 -8.24 -41.61 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.54 Total: 7.79 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -0.05 Total: 11.81 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -1.26 Total: -58.81 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.78 Total: -24.42 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.37 -8.24 -41.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078292170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.536 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds