Wall clock time and date at job start Tue Mar 31 2020 04:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47553 * 2 1 4 4 C 1.50706 * 109.46737 * 119.99858 * 2 1 3 5 5 O 1.21281 * 119.99968 * 101.37688 * 4 2 1 6 6 N 1.34775 * 120.00080 * 281.37392 * 4 2 1 7 7 C 1.46495 * 120.00016 * 180.02562 * 6 4 2 8 8 H 1.09001 * 110.64101 * 31.85878 * 7 6 4 9 9 C 1.54334 * 110.85493 * 268.69105 * 7 6 4 10 10 N 1.47020 * 107.27004 * 219.67655 * 9 7 6 11 11 C 1.36928 * 125.64832 * 178.84557 * 10 9 7 12 12 H 1.07995 * 120.00266 * 346.43384 * 11 10 9 13 13 C 1.38818 * 119.99770 * 166.42841 * 11 10 9 14 14 N 1.31611 * 120.00140 * 350.75931 * 13 11 10 15 15 Si 1.86806 * 119.99921 * 170.76248 * 13 11 10 16 16 H 1.48505 * 109.46786 * 265.12474 * 15 13 11 17 17 H 1.48498 * 109.46902 * 25.12138 * 15 13 11 18 18 H 1.48496 * 109.46937 * 145.12401 * 15 13 11 19 19 C 1.47431 * 108.70121 * 358.58209 * 10 9 7 20 20 C 1.54914 * 104.83267 * 24.35787 * 19 10 9 21 21 H 1.08998 * 111.00022 * 81.06459 * 20 19 10 22 22 O 1.42901 * 111.00454 * 204.91745 * 20 19 10 23 23 N 1.46901 * 109.47193 * 239.99364 * 2 1 3 24 24 C 1.47013 * 110.99619 * 75.07118 * 23 2 1 25 25 C 1.53098 * 109.25686 * 177.60722 * 24 23 2 26 26 O 1.43016 * 109.25852 * 56.85170 * 25 24 23 27 27 C 1.43021 * 113.73500 * 301.32661 * 26 25 24 28 28 C 1.47013 * 110.99925 * 311.43714 * 23 2 1 29 29 H 1.08998 * 109.46723 * 59.99823 * 1 2 3 30 30 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46937 * 300.00461 * 1 2 3 32 32 H 0.97001 * 119.99950 * 0.02562 * 6 4 2 33 33 H 1.08995 * 109.98998 * 100.19607 * 9 7 6 34 34 H 1.09010 * 109.77218 * 339.03276 * 9 7 6 35 35 H 0.97000 * 120.00628 * 180.02562 * 14 13 11 36 36 H 1.08998 * 110.36569 * 143.19702 * 19 10 9 37 37 H 1.09001 * 110.36234 * 265.41181 * 19 10 9 38 38 H 0.96702 * 113.99706 * 298.55180 * 22 20 19 39 39 H 1.09006 * 109.50664 * 297.54036 * 24 23 2 40 40 H 1.08996 * 109.51056 * 57.67160 * 24 23 2 41 41 H 1.08989 * 109.50699 * 296.91303 * 25 24 23 42 42 H 1.09000 * 109.50538 * 176.77864 * 25 24 23 43 43 H 1.09002 * 109.50842 * 298.73635 * 27 26 25 44 44 H 1.08998 * 109.50840 * 178.60921 * 27 26 25 45 45 H 1.09002 * 109.50577 * 302.32118 * 28 23 2 46 46 H 1.08998 * 109.50952 * 62.45544 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 2.4297 -1.8535 1.1511 6 7 2.0398 -0.0755 2.4193 7 6 2.5285 -0.7659 3.6154 8 1 3.3156 -1.4739 3.3557 9 6 1.3732 -1.4802 4.3481 10 7 1.5926 -1.2985 5.7905 11 6 0.7759 -1.7630 6.7866 12 1 -0.2161 -2.1183 6.5500 13 6 1.2231 -1.7771 8.1007 14 7 2.4854 -1.5187 8.3690 15 14 0.0333 -2.1630 9.4881 16 1 -0.4967 -0.8958 10.0525 17 1 -1.0906 -2.9796 8.9635 18 1 0.7415 -2.9204 10.5512 19 6 2.8408 -0.5389 5.9868 20 6 3.0338 0.2540 4.6700 21 1 2.4229 1.1567 4.6645 22 8 4.4116 0.5690 4.4590 23 7 2.0197 -0.6926 -1.1994 24 6 1.8619 0.1485 -2.3947 25 6 2.4378 -0.5858 -3.6084 26 8 1.7860 -1.8513 -3.7470 27 6 1.9200 -2.6964 -2.6011 28 6 1.3389 -1.9835 -1.3771 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7216 0.8387 2.4830 33 1 1.3771 -2.5424 4.1034 34 1 0.4215 -1.0345 4.0587 35 1 2.7981 -1.5289 9.2872 36 1 2.7402 0.1446 6.8299 37 1 3.6772 -1.2189 6.1482 38 1 4.7978 1.1259 5.1488 39 1 0.8037 0.3510 -2.5602 40 1 2.3949 1.0884 -2.2514 41 1 3.5072 -0.7408 -3.4663 42 1 2.2716 0.0093 -4.5064 43 1 2.9745 -2.9128 -2.4297 44 1 1.3797 -3.6277 -2.7704 45 1 1.4903 -2.5998 -0.4909 46 1 0.2724 -1.8151 -1.5263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078292170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:38 Heat of formation + Delta-G solvation = -113.386853 kcal Electronic energy + Delta-G solvation = -27351.528099 eV Core-core repulsion = 23469.298345 eV Total energy + Delta-G solvation = -3882.229755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.55275 -40.34367 -39.28888 -36.99040 -36.68460 -35.56408 -33.72393 -32.21014 -31.94567 -30.11265 -28.80985 -27.68581 -26.50927 -25.01649 -24.81238 -22.56748 -21.97680 -21.47588 -20.74047 -19.06006 -18.52211 -18.02759 -17.73390 -17.17614 -16.94365 -16.51579 -16.19881 -16.05900 -15.90424 -15.81183 -15.45376 -15.18308 -14.89538 -14.79683 -14.48685 -14.07541 -13.89311 -13.53807 -13.30729 -13.19436 -13.05808 -13.01693 -12.87606 -12.76422 -12.71064 -12.34172 -12.08081 -12.03471 -11.94016 -11.55407 -11.51282 -11.08993 -10.89941 -10.76609 -10.42901 -10.14039 -9.32510 -8.94506 -7.94130 -5.32922 1.46187 1.47432 1.57047 1.62125 1.94974 2.45742 2.80382 2.99610 3.05289 3.26272 3.58490 3.62155 3.83208 3.89718 3.98589 4.03315 4.06045 4.14127 4.18333 4.19887 4.31075 4.34110 4.42402 4.55513 4.63106 4.65534 4.72137 4.77679 4.82850 4.86912 4.90412 4.98761 5.02924 5.15050 5.26207 5.43903 5.48955 5.58673 5.83281 5.97211 6.11166 6.18588 6.57947 6.83964 7.00190 7.28739 7.65144 8.31036 9.17438 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025700 B = 0.002879 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.223329 B = 9722.770009 C =10210.939099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.074 3.926 3 H 0.134 0.866 4 C 0.518 3.482 5 O -0.569 6.569 6 N -0.701 5.701 7 C 0.159 3.841 8 H 0.072 0.928 9 C 0.132 3.868 10 N -0.616 5.616 11 C -0.251 4.251 12 H 0.080 0.920 13 C -0.057 4.057 14 N -0.945 5.945 15 Si 0.981 3.019 16 H -0.281 1.281 17 H -0.269 1.269 18 H -0.295 1.295 19 C 0.156 3.844 20 C 0.093 3.907 21 H 0.093 0.907 22 O -0.568 6.568 23 N -0.535 5.535 24 C 0.018 3.982 25 C 0.059 3.941 26 O -0.402 6.402 27 C 0.067 3.933 28 C 0.013 3.987 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.416 0.584 33 H 0.008 0.992 34 H 0.046 0.954 35 H 0.251 0.749 36 H 0.048 0.952 37 H 0.003 0.997 38 H 0.397 0.603 39 H 0.054 0.946 40 H 0.107 0.893 41 H 0.053 0.947 42 H 0.123 0.877 43 H 0.049 0.951 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 9.860 -21.211 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.038 4.038 3 H 0.152 0.848 4 C 0.305 3.695 5 O -0.447 6.447 6 N -0.353 5.353 7 C 0.052 3.948 8 H 0.090 0.910 9 C 0.005 3.995 10 N -0.344 5.344 11 C -0.380 4.380 12 H 0.098 0.902 13 C -0.251 4.251 14 N -0.593 5.593 15 Si 0.809 3.191 16 H -0.207 1.207 17 H -0.194 1.194 18 H -0.221 1.221 19 C 0.030 3.970 20 C 0.032 3.968 21 H 0.111 0.889 22 O -0.375 6.375 23 N -0.260 5.260 24 C -0.109 4.109 25 C -0.018 4.018 26 O -0.321 6.321 27 C -0.009 4.009 28 C -0.115 4.115 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.253 0.747 33 H 0.027 0.973 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.021 0.979 38 H 0.247 0.753 39 H 0.072 0.928 40 H 0.125 0.875 41 H 0.072 0.928 42 H 0.140 0.860 43 H 0.067 0.933 44 H 0.126 0.874 45 H 0.102 0.898 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.011 8.509 -21.725 23.418 hybrid contribution -0.922 0.143 2.006 2.212 sum -2.932 8.652 -19.719 21.732 Atomic orbital electron populations 1.22339 0.93303 1.02982 1.04804 1.21641 0.95507 0.99077 0.87543 0.84826 1.21142 0.76913 0.86574 0.84881 1.90634 1.48159 1.19926 1.85961 1.45724 1.65268 1.17867 1.06483 1.21446 0.94902 0.94112 0.84312 0.91002 1.21699 0.96649 0.96807 0.84307 1.44538 1.25710 1.63615 1.00542 1.19396 0.95076 1.36746 0.86782 0.90226 1.25740 0.97738 1.01653 1.00007 1.70118 1.14668 1.55771 1.18718 0.85032 0.77905 0.77730 0.78452 1.20714 1.19413 1.22149 1.21812 0.87780 0.93052 0.94335 1.23238 0.83175 0.96535 0.93856 0.88949 1.86406 1.24305 1.74462 1.52376 1.62025 1.57402 1.04103 1.02439 1.22931 1.01209 0.97376 0.89419 1.22853 0.96364 0.84132 0.98429 1.87942 1.76462 1.28539 1.39182 1.22657 1.00651 0.93529 0.84106 1.22936 0.96553 0.91921 1.00120 0.89371 0.92985 0.89895 0.74685 0.97346 0.93614 0.93948 0.93338 0.97924 0.75297 0.92778 0.87460 0.92823 0.85958 0.93300 0.87382 0.89840 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 8.31 71.98 0.60 -2.15 16 2 C 0.07 1.41 2.70 44.17 0.12 1.53 16 3 H 0.13 1.76 7.94 -2.39 -0.02 1.74 16 4 C 0.52 14.77 7.00 87.66 0.61 15.38 16 5 O -0.57 -21.62 13.79 -3.03 -0.04 -21.66 16 6 N -0.70 -19.05 5.11 -436.89 -2.23 -21.28 16 7 C 0.16 5.83 3.04 46.19 0.14 5.98 16 8 H 0.07 3.12 7.55 -2.39 -0.02 3.11 16 9 C 0.13 5.69 7.00 86.73 0.61 6.30 16 10 N -0.62 -31.58 3.39 -691.95 -2.35 -33.93 16 11 C -0.25 -13.99 10.22 84.04 0.86 -13.13 16 12 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 13 C -0.06 -3.20 5.39 84.86 0.46 -2.74 16 14 N -0.95 -55.61 10.81 21.65 0.23 -55.38 16 15 Si 0.98 44.75 29.56 68.60 2.03 46.78 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 C 0.16 7.43 5.11 86.86 0.44 7.87 16 20 C 0.09 3.25 4.06 31.99 0.13 3.38 16 21 H 0.09 2.74 8.01 -2.39 -0.02 2.72 16 22 O -0.57 -18.25 13.47 -148.98 -2.01 -20.25 16 23 N -0.53 -11.29 4.47 -874.36 -3.91 -15.20 16 24 C 0.02 0.26 5.44 86.31 0.47 0.73 16 25 C 0.06 0.91 7.01 72.01 0.50 1.41 16 26 O -0.40 -8.48 10.83 -148.98 -1.61 -10.09 16 27 C 0.07 1.45 7.01 72.02 0.50 1.95 16 28 C 0.01 0.29 4.53 86.32 0.39 0.68 16 29 H 0.09 1.04 6.95 -2.39 -0.02 1.02 16 30 H 0.05 1.02 6.37 -2.39 -0.02 1.00 16 31 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.42 8.14 8.56 -92.71 -0.79 7.34 16 33 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 34 H 0.05 1.82 8.03 -2.38 -0.02 1.80 16 35 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 36 H 0.05 2.47 7.16 -2.39 -0.02 2.46 16 37 H 0.00 0.15 8.00 -2.39 -0.02 0.13 16 38 H 0.40 9.41 9.11 -74.06 -0.67 8.73 16 39 H 0.05 0.71 6.94 -2.38 -0.02 0.69 16 40 H 0.11 1.10 8.05 -2.39 -0.02 1.08 16 41 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.08 2.47 5.75 -2.39 -0.01 2.45 16 46 H 0.05 1.05 6.36 -2.39 -0.02 1.04 16 Total: -1.00 -75.16 359.36 -4.52 -79.67 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -0.47 Total: 24.14 kcal Atomic # 6 Polarization: 21.36 SS G_CDS: 5.84 Total: 27.19 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -8.26 Total: -125.79 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -3.66 Total: -52.00 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.16 -4.52 -79.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078292170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.713 kcal (2) G-P(sol) polarization free energy of solvation -75.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds