Wall clock time and date at job start Tue Mar 31 2020 04:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47108 * 2 1 4 4 C 1.50697 * 109.47229 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99711 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00000 * 180.02562 * 4 3 2 7 7 C 1.46502 * 119.99905 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.46822 * 180.02562 * 7 6 4 9 9 O 1.21270 * 120.00367 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99716 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00140 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.45679 * 35.00395 * 11 10 8 13 13 C 1.53038 * 109.45878 * 275.02731 * 11 10 8 14 14 C 1.53202 * 109.30835 * 178.59693 * 13 11 10 15 15 N 1.46926 * 108.76255 * 54.65756 * 14 13 11 16 16 C 1.36937 * 120.62820 * 126.35680 * 15 14 13 17 17 H 1.08001 * 120.00249 * 208.01670 * 16 15 14 18 18 C 1.38810 * 120.00296 * 28.02373 * 16 15 14 19 19 N 1.31624 * 119.99593 * 17.51919 * 18 16 15 20 20 Si 1.86797 * 120.00526 * 197.52423 * 18 16 15 21 21 H 1.48499 * 109.47250 * 94.06140 * 20 18 16 22 22 H 1.48497 * 109.47413 * 214.06772 * 20 18 16 23 23 H 1.48506 * 109.46707 * 334.06393 * 20 18 16 24 24 C 1.46924 * 118.73912 * 306.38530 * 15 14 13 25 25 C 1.53039 * 109.45987 * 154.97131 * 11 10 8 26 26 H 1.08995 * 109.49521 * 61.43641 * 25 11 10 27 27 O 1.42903 * 109.50033 * 301.37218 * 25 11 10 28 28 H 1.08999 * 109.46682 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46472 * 299.99516 * 1 2 3 30 30 H 1.08996 * 109.47549 * 59.99928 * 1 2 3 31 31 H 1.09002 * 109.46472 * 240.00484 * 2 1 3 32 32 H 1.08990 * 109.47451 * 120.00785 * 2 1 3 33 33 H 1.09002 * 109.46964 * 60.00063 * 3 2 1 34 34 H 1.09005 * 109.47139 * 300.00591 * 3 2 1 35 35 H 0.97001 * 120.00075 * 359.97438 * 6 4 3 36 36 H 1.09005 * 109.47078 * 299.99599 * 7 6 4 37 37 H 1.08994 * 109.47114 * 59.99166 * 7 6 4 38 38 H 0.97000 * 120.00135 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.50024 * 298.56128 * 13 11 10 40 40 H 1.09003 * 109.49654 * 58.66574 * 13 11 10 41 41 H 1.08996 * 109.59897 * 294.87229 * 14 13 11 42 42 H 1.08998 * 109.69449 * 174.50346 * 14 13 11 43 43 H 0.97005 * 120.00001 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.58368 * 293.81555 * 24 15 14 45 45 H 1.08998 * 109.70198 * 173.46844 * 24 15 14 46 46 H 0.96691 * 114.00217 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0002 7 6 5.6859 2.6097 -0.0003 8 6 6.1881 4.0306 0.0009 9 8 5.4001 4.9523 0.0012 10 7 7.5133 4.2769 0.0016 11 6 8.0016 5.6581 0.0021 12 1 7.3287 6.2809 0.5915 13 6 8.0530 6.1812 -1.4352 14 6 8.5307 7.6368 -1.4276 15 7 9.8123 7.7100 -0.7129 16 6 10.9068 8.2862 -1.3004 17 1 11.9001 7.9659 -1.0226 18 6 10.7398 9.2820 -2.2529 19 7 9.5892 9.9140 -2.3493 20 14 12.1476 9.7251 -3.3978 21 1 12.0171 8.9582 -4.6627 22 1 12.1056 11.1796 -3.6942 23 1 13.4394 9.3897 -2.7467 24 6 9.8973 7.1527 0.6439 25 6 9.4040 5.7028 0.6132 26 1 10.0830 5.1002 0.0101 27 8 9.3610 5.1847 1.9444 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.7359 3.4498 0.0001 36 1 6.0493 2.0956 0.8896 37 1 6.0492 2.0961 -0.8903 38 1 8.1436 3.5396 0.0017 39 1 8.7450 5.5741 -2.0188 40 1 7.0584 6.1272 -1.8778 41 1 7.7940 8.2607 -0.9216 42 1 8.6631 7.9853 -2.4519 43 1 9.4725 10.6102 -3.0146 44 1 9.2720 7.7372 1.3188 45 1 10.9311 7.1798 0.9882 46 1 10.2171 5.1832 2.3937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099712646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:37 Heat of formation + Delta-G solvation = -115.954137 kcal Electronic energy + Delta-G solvation = -26258.465434 eV Core-core repulsion = 22376.124354 eV Total energy + Delta-G solvation = -3882.341080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35309 -39.49387 -38.04121 -35.47205 -34.90517 -34.56551 -34.29761 -32.06624 -30.35031 -29.28353 -28.55325 -26.93351 -24.96278 -22.58303 -22.24503 -21.79313 -20.57168 -20.37036 -19.57687 -17.92970 -17.15371 -16.79308 -16.42410 -16.32884 -16.10498 -15.56402 -15.39720 -14.87469 -14.34121 -14.26738 -13.97057 -13.85451 -13.46930 -13.33537 -13.15212 -12.98999 -12.75438 -12.35275 -12.24946 -12.07240 -12.03908 -11.64184 -11.49345 -11.16596 -11.04871 -10.92825 -10.75976 -10.40784 -10.30781 -10.11597 -10.04643 -9.95737 -9.79306 -9.51877 -9.36526 -8.87636 -8.51880 -6.82904 -5.89926 -3.34341 2.41763 2.61252 2.72333 3.31260 3.38604 3.40047 3.41578 4.30464 4.44274 4.47787 4.57920 4.69136 4.71723 5.09078 5.12463 5.20242 5.21424 5.22919 5.27002 5.31652 5.41767 5.43863 5.47831 5.70414 5.72427 5.84056 5.89212 5.98980 6.02613 6.10950 6.20870 6.41588 6.43821 6.58993 6.70586 6.74030 7.21719 7.28949 7.51973 7.56257 7.68610 7.85428 8.00130 8.21231 8.32572 9.07980 9.70275 10.25965 11.18699 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026600 B = 0.002356 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.359338 B =11882.517167 C =12444.414829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.514 3.486 5 O -0.545 6.545 6 N -0.718 5.718 7 C 0.099 3.901 8 C 0.507 3.493 9 O -0.541 6.541 10 N -0.709 5.709 11 C 0.163 3.837 12 H 0.089 0.911 13 C -0.146 4.146 14 C 0.171 3.829 15 N -0.588 5.588 16 C -0.261 4.261 17 H 0.068 0.932 18 C 0.005 3.995 19 N -0.898 5.898 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.121 3.879 25 C 0.079 3.921 26 H 0.057 0.943 27 O -0.572 6.572 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.413 0.587 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.399 0.601 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.024 0.976 42 H 0.093 0.907 43 H 0.256 0.744 44 H 0.029 0.971 45 H 0.061 0.939 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.017 -16.254 5.107 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.180 4.180 4 C 0.300 3.700 5 O -0.423 6.423 6 N -0.374 5.374 7 C -0.028 4.028 8 C 0.292 3.708 9 O -0.419 6.419 10 N -0.359 5.359 11 C 0.059 3.941 12 H 0.107 0.893 13 C -0.187 4.187 14 C 0.045 3.955 15 N -0.312 5.312 16 C -0.390 4.390 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.542 5.542 20 Si 0.735 3.265 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.007 4.007 25 C 0.018 3.982 26 H 0.075 0.925 27 O -0.376 6.376 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.251 0.749 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.233 0.767 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.042 0.958 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.800 -16.235 4.858 20.650 hybrid contribution 1.480 0.513 -0.500 1.645 sum -10.319 -15.722 4.359 19.305 Atomic orbital electron populations 1.21799 0.95438 1.01960 1.01882 1.21282 0.95291 0.94583 1.03564 1.21715 0.91227 1.00308 1.04754 1.20795 0.90527 0.83116 0.75519 1.90703 1.70575 1.31325 1.49682 1.45790 1.06096 1.09965 1.75536 1.21065 0.82248 0.94858 1.04661 1.20397 0.83192 0.90699 0.76508 1.90699 1.55132 1.45823 1.50197 1.46012 1.06243 1.09799 1.73811 1.21058 0.94016 0.81330 0.97684 0.89300 1.22609 1.00934 1.01277 0.93866 1.20831 0.86024 0.88980 0.99698 1.44040 1.09198 1.67669 1.10247 1.19173 0.86306 1.14058 1.19448 0.91475 1.25086 0.97119 0.95729 1.01476 1.70042 1.24388 1.24222 1.35539 0.86241 0.81740 0.77396 0.81160 1.21346 1.21677 1.20338 1.21520 0.99164 0.90769 0.89228 1.22780 0.95782 0.97210 0.82385 0.92486 1.86470 1.36316 1.86278 1.28547 0.92409 0.92630 0.92617 0.91224 0.91236 0.88687 0.88666 0.74914 0.88501 0.88525 0.76679 0.92241 0.91926 0.95772 0.88863 0.93405 0.95313 0.92091 0.77865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.11 -0.84 5.22 -26.73 -0.14 -0.98 16 3 C -0.14 -1.05 5.70 -27.88 -0.16 -1.20 16 4 C 0.51 5.61 7.83 -10.99 -0.09 5.52 16 5 O -0.55 -7.75 15.98 5.55 0.09 -7.66 16 6 N -0.72 -7.73 5.53 -61.47 -0.34 -8.07 16 7 C 0.10 1.09 6.15 -5.19 -0.03 1.06 16 8 C 0.51 7.03 7.86 -10.98 -0.09 6.94 16 9 O -0.54 -9.30 15.33 5.57 0.09 -9.22 16 10 N -0.71 -9.67 4.92 -53.77 -0.26 -9.94 16 11 C 0.16 2.76 2.12 -67.89 -0.14 2.62 16 12 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 13 C -0.15 -2.75 5.65 -26.61 -0.15 -2.90 16 14 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 15 N -0.59 -13.99 2.99 -172.32 -0.52 -14.50 16 16 C -0.26 -6.82 9.58 -15.06 -0.14 -6.97 16 17 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 18 C 0.01 0.14 4.90 -17.43 -0.09 0.06 16 19 N -0.90 -25.41 11.22 55.49 0.62 -24.79 16 20 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.12 2.37 6.14 -3.72 -0.02 2.35 16 25 C 0.08 1.28 3.14 -26.62 -0.08 1.20 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 O -0.57 -8.08 13.16 -35.23 -0.46 -8.55 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.41 4.28 7.44 -40.82 -0.30 3.98 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 4.41 8.60 -40.82 -0.35 4.06 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 1.13 7.94 -51.93 -0.41 0.71 16 46 H 0.37 3.76 9.08 45.56 0.41 4.17 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -32.78 376.37 -7.75 -40.54 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.82 Total: 9.44 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -0.78 Total: 11.13 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.50 Total: -57.31 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.29 Total: -25.43 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.78 -7.75 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099712646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.417 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds