Wall clock time and date at job start Tue Mar 31 2020 04:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47108 * 2 1 4 4 C 1.50697 * 109.47229 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99711 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00000 * 180.02562 * 4 3 2 7 7 C 1.46502 * 119.99905 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.46822 * 180.02562 * 7 6 4 9 9 O 1.21270 * 120.00367 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99716 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00140 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.45679 * 35.00395 * 11 10 8 13 13 C 1.53038 * 109.45878 * 275.02731 * 11 10 8 14 14 C 1.53202 * 109.30835 * 178.59693 * 13 11 10 15 15 N 1.46926 * 108.76255 * 54.65756 * 14 13 11 16 16 C 1.36937 * 120.62820 * 126.35680 * 15 14 13 17 17 H 1.08001 * 120.00249 * 208.01670 * 16 15 14 18 18 C 1.38810 * 120.00296 * 28.02373 * 16 15 14 19 19 N 1.31624 * 119.99593 * 17.51919 * 18 16 15 20 20 Si 1.86797 * 120.00526 * 197.52423 * 18 16 15 21 21 H 1.48499 * 109.47250 * 94.06140 * 20 18 16 22 22 H 1.48497 * 109.47413 * 214.06772 * 20 18 16 23 23 H 1.48506 * 109.46707 * 334.06393 * 20 18 16 24 24 C 1.46924 * 118.73912 * 306.38530 * 15 14 13 25 25 C 1.53039 * 109.45987 * 154.97131 * 11 10 8 26 26 H 1.08995 * 109.49521 * 61.43641 * 25 11 10 27 27 O 1.42903 * 109.50033 * 301.37218 * 25 11 10 28 28 H 1.08999 * 109.46682 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46472 * 299.99516 * 1 2 3 30 30 H 1.08996 * 109.47549 * 59.99928 * 1 2 3 31 31 H 1.09002 * 109.46472 * 240.00484 * 2 1 3 32 32 H 1.08990 * 109.47451 * 120.00785 * 2 1 3 33 33 H 1.09002 * 109.46964 * 60.00063 * 3 2 1 34 34 H 1.09005 * 109.47139 * 300.00591 * 3 2 1 35 35 H 0.97001 * 120.00075 * 359.97438 * 6 4 3 36 36 H 1.09005 * 109.47078 * 299.99599 * 7 6 4 37 37 H 1.08994 * 109.47114 * 59.99166 * 7 6 4 38 38 H 0.97000 * 120.00135 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.50024 * 298.56128 * 13 11 10 40 40 H 1.09003 * 109.49654 * 58.66574 * 13 11 10 41 41 H 1.08996 * 109.59897 * 294.87229 * 14 13 11 42 42 H 1.08998 * 109.69449 * 174.50346 * 14 13 11 43 43 H 0.97005 * 120.00001 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.58368 * 293.81555 * 24 15 14 45 45 H 1.08998 * 109.70198 * 173.46844 * 24 15 14 46 46 H 0.96691 * 114.00217 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0002 7 6 5.6859 2.6097 -0.0003 8 6 6.1881 4.0306 0.0009 9 8 5.4001 4.9523 0.0012 10 7 7.5133 4.2769 0.0016 11 6 8.0016 5.6581 0.0021 12 1 7.3287 6.2809 0.5915 13 6 8.0530 6.1812 -1.4352 14 6 8.5307 7.6368 -1.4276 15 7 9.8123 7.7100 -0.7129 16 6 10.9068 8.2862 -1.3004 17 1 11.9001 7.9659 -1.0226 18 6 10.7398 9.2820 -2.2529 19 7 9.5892 9.9140 -2.3493 20 14 12.1476 9.7251 -3.3978 21 1 12.0171 8.9582 -4.6627 22 1 12.1056 11.1796 -3.6942 23 1 13.4394 9.3897 -2.7467 24 6 9.8973 7.1527 0.6439 25 6 9.4040 5.7028 0.6132 26 1 10.0830 5.1002 0.0101 27 8 9.3610 5.1847 1.9444 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.7359 3.4498 0.0001 36 1 6.0493 2.0956 0.8896 37 1 6.0492 2.0961 -0.8903 38 1 8.1436 3.5396 0.0017 39 1 8.7450 5.5741 -2.0188 40 1 7.0584 6.1272 -1.8778 41 1 7.7940 8.2607 -0.9216 42 1 8.6631 7.9853 -2.4519 43 1 9.4725 10.6102 -3.0146 44 1 9.2720 7.7372 1.3188 45 1 10.9311 7.1798 0.9882 46 1 10.2171 5.1832 2.3937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099712646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:36 Heat of formation + Delta-G solvation = -142.627603 kcal Electronic energy + Delta-G solvation = -26259.622082 eV Core-core repulsion = 22376.124354 eV Total energy + Delta-G solvation = -3883.497729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43397 -40.56069 -39.41107 -36.97686 -35.95507 -35.52292 -35.20986 -33.82715 -31.93406 -30.48540 -29.77859 -27.91069 -26.62140 -24.10465 -23.62353 -22.74001 -21.63406 -21.33699 -21.09358 -19.10368 -18.62258 -18.04702 -17.69696 -17.20800 -17.14114 -16.86907 -16.48922 -16.32928 -15.69995 -15.53284 -15.19925 -15.08349 -14.91160 -14.49799 -14.30601 -13.95479 -13.91620 -13.80573 -13.47674 -13.28033 -12.98104 -12.83091 -12.74447 -12.65400 -12.39400 -12.12394 -12.05132 -12.01749 -11.89798 -11.61039 -11.43328 -11.13521 -11.02281 -10.92884 -10.58202 -10.27338 -10.06556 -8.77287 -7.91405 -5.38645 1.47020 1.48024 1.49600 1.58540 1.61011 1.75442 2.42895 2.48499 3.11361 3.25551 3.56921 3.62479 3.80773 3.87694 4.03748 4.05287 4.13258 4.21390 4.31266 4.33143 4.38917 4.52300 4.60197 4.67729 4.71559 4.78306 4.83801 4.92548 4.93285 5.01345 5.11924 5.20333 5.28539 5.29603 5.36578 5.41935 5.48508 5.60055 5.65642 6.33253 6.43749 6.46541 6.87854 7.09065 7.12337 7.16465 7.77407 8.29658 9.15846 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026600 B = 0.002356 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.359338 B =11882.517167 C =12444.414829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.135 4.135 4 C 0.512 3.488 5 O -0.582 6.582 6 N -0.718 5.718 7 C 0.107 3.893 8 C 0.509 3.491 9 O -0.576 6.576 10 N -0.698 5.698 11 C 0.171 3.829 12 H 0.059 0.941 13 C -0.129 4.129 14 C 0.179 3.821 15 N -0.603 5.603 16 C -0.264 4.264 17 H 0.076 0.924 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.286 1.286 22 H -0.299 1.299 23 H -0.264 1.264 24 C 0.117 3.883 25 C 0.101 3.899 26 H 0.075 0.925 27 O -0.571 6.571 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.416 0.584 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.416 0.584 39 H 0.070 0.930 40 H 0.060 0.940 41 H -0.008 1.008 42 H 0.062 0.938 43 H 0.251 0.749 44 H 0.012 0.988 45 H 0.075 0.925 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 -18.199 5.567 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.175 4.175 4 C 0.301 3.699 5 O -0.462 6.462 6 N -0.373 5.373 7 C -0.020 4.020 8 C 0.296 3.704 9 O -0.456 6.456 10 N -0.349 5.349 11 C 0.066 3.934 12 H 0.077 0.923 13 C -0.169 4.169 14 C 0.052 3.948 15 N -0.328 5.328 16 C -0.394 4.394 17 H 0.094 0.906 18 C -0.247 4.247 19 N -0.581 5.581 20 Si 0.798 3.202 21 H -0.212 1.212 22 H -0.226 1.226 23 H -0.188 1.188 24 C -0.010 4.010 25 C 0.040 3.960 26 H 0.092 0.908 27 O -0.378 6.378 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.254 0.746 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.253 0.747 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.010 0.990 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.030 0.970 45 H 0.093 0.907 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -11.316 -18.227 5.358 22.113 hybrid contribution 1.330 1.125 -0.542 1.824 sum -9.986 -17.102 4.816 20.381 Atomic orbital electron populations 1.21769 0.93816 1.02419 1.02651 1.21260 0.96635 0.94490 1.02276 1.21782 0.88627 1.00552 1.06536 1.21380 0.91810 0.82362 0.74388 1.90687 1.71537 1.32460 1.51473 1.45860 1.06054 1.10177 1.75233 1.21046 0.82560 0.92539 1.05891 1.20866 0.82758 0.91528 0.75290 1.90694 1.55999 1.47245 1.51652 1.45756 1.06731 1.08803 1.73569 1.20656 0.94238 0.82701 0.95816 0.92268 1.22320 1.00715 0.98282 0.95576 1.20560 0.85525 0.91303 0.97397 1.44249 1.08636 1.67892 1.12005 1.19566 0.87319 1.13419 1.19106 0.90590 1.25876 0.99369 0.96166 1.03248 1.70206 1.26497 1.25097 1.36331 0.85216 0.79517 0.76334 0.79137 1.21228 1.22566 1.18829 1.21691 0.99920 0.92584 0.86766 1.22311 0.94997 0.94885 0.83788 0.90760 1.86443 1.38299 1.85575 1.27478 0.92184 0.91800 0.91864 0.92598 0.92534 0.86752 0.86824 0.74601 0.87221 0.87172 0.74669 0.91158 0.92141 0.98953 0.92004 0.94030 0.97034 0.90699 0.75346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.11 -1.54 5.22 30.60 0.16 -1.38 16 3 C -0.14 -1.77 5.70 29.85 0.17 -1.60 16 4 C 0.51 10.45 7.83 87.66 0.69 11.13 16 5 O -0.58 -15.97 15.98 -3.04 -0.05 -16.02 16 6 N -0.72 -14.31 5.53 -466.79 -2.58 -16.89 16 7 C 0.11 2.13 6.15 85.63 0.53 2.66 16 8 C 0.51 13.33 7.86 87.66 0.69 14.02 16 9 O -0.58 -19.52 15.33 -3.00 -0.05 -19.56 16 10 N -0.70 -17.60 4.92 -442.41 -2.18 -19.77 16 11 C 0.17 5.64 2.12 45.02 0.10 5.74 16 12 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 13 C -0.13 -4.81 5.65 30.67 0.17 -4.64 16 14 C 0.18 8.57 5.31 86.37 0.46 9.03 16 15 N -0.60 -28.89 2.99 -699.10 -2.09 -30.99 16 16 C -0.26 -13.79 9.58 84.03 0.81 -12.98 16 17 H 0.08 3.77 7.89 -2.91 -0.02 3.74 16 18 C -0.05 -2.76 4.90 84.86 0.42 -2.35 16 19 N -0.94 -54.69 11.22 21.65 0.24 -54.45 16 20 Si 0.97 43.39 29.59 68.60 2.03 45.42 16 21 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 24 C 0.12 4.50 6.14 86.36 0.53 5.03 16 25 C 0.10 3.06 3.14 30.67 0.10 3.15 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 O -0.57 -14.40 13.16 -148.98 -1.96 -16.36 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.42 8.04 7.44 -92.71 -0.69 7.35 16 36 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.42 7.86 8.60 -92.71 -0.80 7.06 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.06 3.34 6.06 -2.39 -0.01 3.33 16 43 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 44 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.07 2.63 7.94 -2.39 -0.02 2.61 16 46 H 0.40 6.48 9.08 -74.06 -0.67 5.81 16 Total: -1.00 -72.57 376.37 -2.27 -74.83 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -1.16 Total: 26.72 kcal Atomic # 6 Polarization: 21.54 SS G_CDS: 5.52 Total: 27.06 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -6.60 Total: -122.09 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -2.06 Total: -51.94 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -72.57 -2.27 -74.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099712646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.794 kcal (2) G-P(sol) polarization free energy of solvation -72.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds