Wall clock time and date at job start Tue Mar 31 2020 04:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47279 * 2 1 4 4 O 1.21284 * 119.99791 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00067 * 180.02562 * 3 2 1 6 6 C 1.46497 * 120.00012 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47106 * 179.97438 * 6 5 3 8 8 O 1.21275 * 120.00018 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99980 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00121 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47205 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.55500 * 304.87375 * 11 10 9 13 13 C 1.53298 * 109.51390 * 184.74228 * 11 10 9 14 14 N 1.47151 * 108.38467 * 187.77317 * 13 11 10 15 15 C 1.36933 * 120.98034 * 230.55553 * 14 13 11 16 16 H 1.08004 * 119.99835 * 153.30360 * 15 14 13 17 17 C 1.38817 * 120.00467 * 333.30764 * 15 14 13 18 18 N 1.31619 * 119.99654 * 343.55139 * 17 15 14 19 19 Si 1.86796 * 120.00056 * 163.55185 * 17 15 14 20 20 H 1.48496 * 109.47112 * 94.83196 * 19 17 15 21 21 H 1.48498 * 109.47020 * 214.83071 * 19 17 15 22 22 H 1.48497 * 109.47184 * 334.83052 * 19 17 15 23 23 C 1.47151 * 118.03597 * 50.53995 * 14 13 11 24 24 C 1.53294 * 108.38487 * 309.46342 * 23 14 13 25 25 O 1.42962 * 109.51318 * 65.00231 * 11 10 9 26 26 H 1.08999 * 109.47363 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47047 * 300.00515 * 1 2 3 28 28 H 1.09005 * 109.47264 * 60.00232 * 1 2 3 29 29 H 1.09003 * 109.46857 * 240.00004 * 2 1 3 30 30 H 1.09002 * 109.47234 * 120.00298 * 2 1 3 31 31 H 0.96999 * 119.99881 * 359.97438 * 5 3 2 32 32 H 1.08994 * 109.47581 * 59.98874 * 6 5 3 33 33 H 1.09005 * 109.46763 * 299.98798 * 6 5 3 34 34 H 0.96996 * 120.00140 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47155 * 59.99330 * 10 9 7 36 36 H 1.09005 * 109.47132 * 299.99626 * 10 9 7 37 37 H 1.09010 * 109.47184 * 180.13002 * 12 11 10 38 38 H 1.08998 * 109.47124 * 300.12332 * 12 11 10 39 39 H 1.08998 * 109.47470 * 60.12940 * 12 11 10 40 40 H 1.09000 * 109.68350 * 307.50368 * 13 11 10 41 41 H 1.09003 * 109.67500 * 68.01332 * 13 11 10 42 42 H 0.97002 * 120.00107 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.68306 * 189.73649 * 23 14 13 44 44 H 1.09005 * 109.67737 * 69.18539 * 23 14 13 45 45 H 1.08993 * 109.51453 * 172.22607 * 24 23 14 46 46 H 1.08999 * 109.50743 * 292.33075 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0482 0.0000 7 6 5.3528 3.0482 -0.0001 8 8 5.9591 1.9979 -0.0001 9 7 6.0267 4.2154 -0.0001 10 6 7.4917 4.2154 0.0003 11 6 8.0017 5.6579 -0.0005 12 6 7.3956 6.4146 -1.1840 13 6 9.5300 5.6605 -0.1195 14 7 10.0079 7.0393 0.0700 15 6 10.8702 7.6156 -0.8241 16 1 10.8843 8.6887 -0.9459 17 6 11.7261 6.8207 -1.5742 18 7 11.9502 5.5744 -1.2154 19 14 12.5597 7.5199 -3.0925 20 1 13.9098 8.0206 -2.7297 21 1 12.6861 6.4568 -4.1216 22 1 11.7459 8.6381 -3.6334 23 6 9.5314 7.7807 1.2484 24 6 8.0030 7.6747 1.3009 25 8 7.6236 6.2987 1.2202 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.9877 0.9298 -0.0005 32 1 3.4828 3.5617 0.8903 33 1 3.4821 3.5625 -0.8896 34 1 5.5417 5.0554 -0.0005 35 1 7.8553 3.7013 -0.8894 36 1 7.8548 3.7018 0.8906 37 1 7.7616 7.4414 -1.1846 38 1 7.6843 5.9255 -2.1143 39 1 6.3091 6.4163 -1.0963 40 1 9.9591 5.0147 0.6466 41 1 9.8219 5.3026 -1.1069 42 1 12.5479 5.0187 -1.7397 43 1 9.8243 8.8274 1.1668 44 1 9.9607 7.3483 2.1523 45 1 7.6407 8.0980 2.2376 46 1 7.5713 8.2219 0.4629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107817540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:04 Heat of formation + Delta-G solvation = -98.187718 kcal Electronic energy + Delta-G solvation = -26693.192483 eV Core-core repulsion = 22811.621813 eV Total energy + Delta-G solvation = -3881.570671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36756 -39.54955 -38.77245 -35.22290 -34.58480 -34.37873 -33.08801 -31.90146 -31.30429 -28.67981 -27.99078 -26.42225 -25.47226 -23.99069 -23.27863 -21.35978 -20.64334 -20.48104 -18.80436 -17.98665 -17.17817 -16.53488 -16.37275 -16.31276 -15.83745 -15.37785 -15.11966 -14.99375 -14.41909 -14.22243 -14.03638 -13.84824 -13.59843 -13.36005 -13.05664 -12.99117 -12.69961 -12.60008 -12.36807 -12.05120 -11.95289 -11.64789 -11.46871 -11.24795 -11.07239 -10.87498 -10.70843 -10.37364 -10.30629 -10.16817 -10.14176 -9.95341 -9.59621 -9.41625 -9.11287 -8.98842 -8.58801 -6.78543 -5.89563 -3.33251 2.37620 2.52038 2.67583 3.29818 3.36465 3.38449 3.39406 4.17867 4.39225 4.44029 4.61734 4.78063 4.78892 5.07029 5.10398 5.12113 5.27614 5.28972 5.40352 5.45625 5.49635 5.60667 5.62429 5.86630 5.87733 5.89684 5.93056 5.99698 6.07229 6.08781 6.23333 6.36776 6.47134 6.59470 6.69600 6.77294 7.01176 7.24375 7.39980 7.45082 7.66391 7.81842 7.96287 8.10511 8.28238 9.05932 9.68877 10.26101 11.18531 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.002561 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.640749 B =10931.636874 C =11469.355172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.512 3.488 4 O -0.544 6.544 5 N -0.719 5.719 6 C 0.099 3.901 7 C 0.505 3.495 8 O -0.544 6.544 9 N -0.710 5.710 10 C 0.139 3.861 11 C 0.077 3.923 12 C -0.163 4.163 13 C 0.160 3.840 14 N -0.590 5.590 15 C -0.254 4.254 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.384 6.384 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.413 0.587 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.405 0.595 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.030 0.970 41 H 0.096 0.904 42 H 0.256 0.744 43 H 0.061 0.939 44 H 0.026 0.974 45 H 0.081 0.919 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.559 -6.550 2.221 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.299 3.701 4 O -0.422 6.422 5 N -0.375 5.375 6 C -0.029 4.029 7 C 0.290 3.710 8 O -0.422 6.422 9 N -0.362 5.362 10 C 0.016 3.984 11 C 0.036 3.964 12 C -0.220 4.220 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.018 4.018 24 C -0.032 4.032 25 O -0.304 6.304 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.251 0.749 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.241 0.759 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.099 0.901 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.618 -6.822 2.277 19.029 hybrid contribution 0.934 0.613 -0.917 1.445 sum -16.684 -6.209 1.360 17.854 Atomic orbital electron populations 1.21533 0.92908 1.01631 1.03385 1.21621 0.98639 0.93399 1.04670 1.20827 0.81556 0.92150 0.75532 1.90709 1.55327 1.46566 1.49552 1.45783 1.07685 1.08342 1.75647 1.21058 0.91437 0.85547 1.04828 1.20437 0.89501 0.84388 0.76688 1.90697 1.69891 1.31214 1.50396 1.45947 1.08236 1.08243 1.73772 1.21402 0.77907 0.95972 1.03128 1.22557 0.99002 0.90236 0.84589 1.22213 0.98566 1.02865 0.98363 1.21285 0.85705 0.86769 1.02910 1.43987 1.52266 1.11807 1.23333 1.19152 1.12779 0.91863 1.14571 0.91431 1.25056 0.97184 0.96678 1.00613 1.70010 1.38152 1.07647 1.38764 0.86276 0.79461 0.78144 0.82885 1.21374 1.21451 1.20394 1.21605 0.92189 0.96916 0.91054 1.23040 0.97061 0.82693 1.00392 1.87819 1.80224 1.24325 1.38023 0.92014 0.91961 0.91961 0.88706 0.88702 0.74936 0.88368 0.88429 0.75942 0.89787 0.90604 0.90678 0.91823 0.93932 0.95228 0.88558 0.93420 0.92007 0.95631 0.90136 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.20 37.16 0.34 -0.62 16 2 C -0.14 -0.98 6.42 -27.88 -0.18 -1.15 16 3 C 0.51 5.34 7.83 -10.99 -0.09 5.25 16 4 O -0.54 -7.56 15.98 5.55 0.09 -7.47 16 5 N -0.72 -7.23 5.53 -61.47 -0.34 -7.57 16 6 C 0.10 1.02 6.15 -5.20 -0.03 0.99 16 7 C 0.50 6.49 7.90 -10.99 -0.09 6.41 16 8 O -0.54 -8.66 15.67 5.56 0.09 -8.58 16 9 N -0.71 -9.18 5.19 -60.29 -0.31 -9.50 16 10 C 0.14 2.23 4.85 -4.04 -0.02 2.21 16 11 C 0.08 1.36 0.78 -90.47 -0.07 1.29 16 12 C -0.16 -2.63 7.86 37.16 0.29 -2.34 16 13 C 0.16 3.60 4.11 -3.53 -0.01 3.59 16 14 N -0.59 -14.00 2.56 -171.82 -0.44 -14.44 16 15 C -0.25 -6.63 9.65 -15.06 -0.15 -6.77 16 16 H 0.07 1.73 7.88 -52.48 -0.41 1.31 16 17 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 18 N -0.90 -25.20 11.14 55.49 0.62 -24.58 16 19 Si 0.90 20.91 29.58 -169.99 -5.03 15.88 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.11 2.17 6.73 -3.53 -0.02 2.15 16 24 C 0.05 0.77 6.60 37.31 0.25 1.01 16 25 O -0.38 -6.78 10.17 -35.23 -0.36 -7.14 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.41 3.91 7.44 -40.82 -0.30 3.61 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.40 4.54 7.00 -40.82 -0.29 4.25 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.35 6.11 -51.92 -0.32 1.03 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.04 0.56 6.59 -51.93 -0.34 0.22 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 2.40 6.16 -51.93 -0.32 2.08 16 42 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.78 6.26 -51.93 -0.32 0.46 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -31.90 369.66 -7.33 -39.23 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -7.35 Total: 6.57 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 0.14 Total: 12.02 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.47 Total: -56.09 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.18 Total: -23.18 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.90 -7.33 -39.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107817540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.959 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds