Wall clock time and date at job start Tue Mar 31 2020 04:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47279 * 2 1 4 4 O 1.21284 * 119.99791 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00067 * 180.02562 * 3 2 1 6 6 C 1.46497 * 120.00012 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47106 * 179.97438 * 6 5 3 8 8 O 1.21275 * 120.00018 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99980 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00121 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47205 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.55500 * 304.87375 * 11 10 9 13 13 C 1.53298 * 109.51390 * 184.74228 * 11 10 9 14 14 N 1.47151 * 108.38467 * 187.77317 * 13 11 10 15 15 C 1.36933 * 120.98034 * 230.55553 * 14 13 11 16 16 H 1.08004 * 119.99835 * 153.30360 * 15 14 13 17 17 C 1.38817 * 120.00467 * 333.30764 * 15 14 13 18 18 N 1.31619 * 119.99654 * 343.55139 * 17 15 14 19 19 Si 1.86796 * 120.00056 * 163.55185 * 17 15 14 20 20 H 1.48496 * 109.47112 * 94.83196 * 19 17 15 21 21 H 1.48498 * 109.47020 * 214.83071 * 19 17 15 22 22 H 1.48497 * 109.47184 * 334.83052 * 19 17 15 23 23 C 1.47151 * 118.03597 * 50.53995 * 14 13 11 24 24 C 1.53294 * 108.38487 * 309.46342 * 23 14 13 25 25 O 1.42962 * 109.51318 * 65.00231 * 11 10 9 26 26 H 1.08999 * 109.47363 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47047 * 300.00515 * 1 2 3 28 28 H 1.09005 * 109.47264 * 60.00232 * 1 2 3 29 29 H 1.09003 * 109.46857 * 240.00004 * 2 1 3 30 30 H 1.09002 * 109.47234 * 120.00298 * 2 1 3 31 31 H 0.96999 * 119.99881 * 359.97438 * 5 3 2 32 32 H 1.08994 * 109.47581 * 59.98874 * 6 5 3 33 33 H 1.09005 * 109.46763 * 299.98798 * 6 5 3 34 34 H 0.96996 * 120.00140 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47155 * 59.99330 * 10 9 7 36 36 H 1.09005 * 109.47132 * 299.99626 * 10 9 7 37 37 H 1.09010 * 109.47184 * 180.13002 * 12 11 10 38 38 H 1.08998 * 109.47124 * 300.12332 * 12 11 10 39 39 H 1.08998 * 109.47470 * 60.12940 * 12 11 10 40 40 H 1.09000 * 109.68350 * 307.50368 * 13 11 10 41 41 H 1.09003 * 109.67500 * 68.01332 * 13 11 10 42 42 H 0.97002 * 120.00107 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.68306 * 189.73649 * 23 14 13 44 44 H 1.09005 * 109.67737 * 69.18539 * 23 14 13 45 45 H 1.08993 * 109.51453 * 172.22607 * 24 23 14 46 46 H 1.08999 * 109.50743 * 292.33075 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0482 0.0000 7 6 5.3528 3.0482 -0.0001 8 8 5.9591 1.9979 -0.0001 9 7 6.0267 4.2154 -0.0001 10 6 7.4917 4.2154 0.0003 11 6 8.0017 5.6579 -0.0005 12 6 7.3956 6.4146 -1.1840 13 6 9.5300 5.6605 -0.1195 14 7 10.0079 7.0393 0.0700 15 6 10.8702 7.6156 -0.8241 16 1 10.8843 8.6887 -0.9459 17 6 11.7261 6.8207 -1.5742 18 7 11.9502 5.5744 -1.2154 19 14 12.5597 7.5199 -3.0925 20 1 13.9098 8.0206 -2.7297 21 1 12.6861 6.4568 -4.1216 22 1 11.7459 8.6381 -3.6334 23 6 9.5314 7.7807 1.2484 24 6 8.0030 7.6747 1.3009 25 8 7.6236 6.2987 1.2202 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.9877 0.9298 -0.0005 32 1 3.4828 3.5617 0.8903 33 1 3.4821 3.5625 -0.8896 34 1 5.5417 5.0554 -0.0005 35 1 7.8553 3.7013 -0.8894 36 1 7.8548 3.7018 0.8906 37 1 7.7616 7.4414 -1.1846 38 1 7.6843 5.9255 -2.1143 39 1 6.3091 6.4163 -1.0963 40 1 9.9591 5.0147 0.6466 41 1 9.8219 5.3026 -1.1069 42 1 12.5479 5.0187 -1.7397 43 1 9.8243 8.8274 1.1668 44 1 9.9607 7.3483 2.1523 45 1 7.6407 8.0980 2.2376 46 1 7.5713 8.2219 0.4629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107817540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:03 Heat of formation + Delta-G solvation = -122.293649 kcal Electronic energy + Delta-G solvation = -26694.237795 eV Core-core repulsion = 22811.621813 eV Total energy + Delta-G solvation = -3882.615982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40784 -40.71752 -40.00310 -36.62210 -36.02530 -35.46938 -33.71177 -33.28690 -33.15200 -29.74493 -29.46036 -28.00458 -26.86526 -25.00572 -24.71902 -22.91529 -21.66671 -21.34568 -20.31794 -19.03569 -18.79158 -17.66654 -17.45702 -17.31914 -17.06107 -16.72603 -16.29239 -16.17104 -15.99308 -15.60161 -15.30451 -15.18395 -14.76531 -14.70447 -14.50962 -14.16222 -13.99654 -13.57770 -13.27973 -13.16800 -13.12829 -12.92300 -12.78560 -12.61153 -12.53772 -12.42311 -12.16316 -12.00288 -11.94718 -11.85256 -11.24859 -11.07615 -10.97783 -10.74939 -10.49915 -10.29946 -10.12676 -8.70909 -7.90036 -5.36850 1.45030 1.45294 1.47662 1.56790 1.62426 1.75297 2.42510 2.49476 2.79224 3.24788 3.49569 3.57072 3.83518 3.94098 4.02125 4.10753 4.24780 4.25634 4.33747 4.36546 4.42938 4.46616 4.57204 4.63532 4.71824 4.76455 4.79021 4.96955 5.02776 5.05134 5.09164 5.12181 5.21294 5.23131 5.29630 5.37048 5.40361 5.54181 5.61820 6.29596 6.36905 6.41070 6.47533 7.06539 7.07587 7.18503 7.76317 8.30259 9.15632 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.002561 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.640749 B =10931.636874 C =11469.355172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.509 3.491 4 O -0.583 6.583 5 N -0.718 5.718 6 C 0.105 3.895 7 C 0.510 3.490 8 O -0.575 6.575 9 N -0.701 5.701 10 C 0.150 3.850 11 C 0.092 3.908 12 C -0.155 4.155 13 C 0.167 3.833 14 N -0.607 5.607 15 C -0.258 4.258 16 H 0.072 0.928 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.289 1.289 21 H -0.294 1.294 22 H -0.266 1.266 23 C 0.101 3.899 24 C 0.053 3.947 25 O -0.385 6.385 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.416 0.584 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.417 0.583 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.079 0.921 40 H -0.007 1.007 41 H 0.067 0.933 42 H 0.250 0.750 43 H 0.071 0.929 44 H 0.012 0.988 45 H 0.117 0.883 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.645 -6.040 2.058 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.298 3.702 4 O -0.463 6.463 5 N -0.373 5.373 6 C -0.022 4.022 7 C 0.296 3.704 8 O -0.455 6.455 9 N -0.353 5.353 10 C 0.026 3.974 11 C 0.051 3.949 12 C -0.212 4.212 13 C 0.040 3.960 14 N -0.331 5.331 15 C -0.388 4.388 16 H 0.090 0.910 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.794 3.206 20 H -0.216 1.216 21 H -0.220 1.220 22 H -0.191 1.191 23 C -0.024 4.024 24 C -0.024 4.024 25 O -0.304 6.304 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.255 0.745 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.255 0.745 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.011 0.989 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.030 0.970 45 H 0.135 0.865 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.732 -6.284 2.130 20.817 hybrid contribution 1.614 0.474 -0.780 1.854 sum -18.118 -5.810 1.350 19.075 Atomic orbital electron populations 1.21541 0.93168 1.02694 1.02034 1.21702 0.98311 0.91219 1.06621 1.21474 0.81092 0.93253 0.74361 1.90692 1.56131 1.48020 1.51473 1.45847 1.07846 1.08334 1.75272 1.21049 0.88980 0.86196 1.05988 1.20832 0.90482 0.83576 0.75464 1.90691 1.70798 1.32341 1.51711 1.45742 1.06735 1.09103 1.73731 1.21045 0.79881 0.94501 1.02018 1.22209 0.95452 0.91574 0.85661 1.22125 1.00706 1.01337 0.97029 1.21067 0.89191 0.85794 0.99940 1.44242 1.52300 1.12172 1.24388 1.19491 1.12502 0.92193 1.14621 0.90988 1.25788 0.98368 0.97055 1.03300 1.70174 1.39234 1.08910 1.39857 0.85289 0.78325 0.77494 0.79525 1.21577 1.22000 1.19092 1.21822 0.94797 0.96780 0.89011 1.23096 0.94175 0.82331 1.02843 1.87831 1.79704 1.25062 1.37843 0.89703 0.93329 0.93327 0.86642 0.86643 0.74508 0.87255 0.87083 0.74540 0.90637 0.92249 0.92109 0.92470 0.90210 0.98884 0.91439 0.94049 0.91069 0.97003 0.86550 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.20 71.98 0.66 -1.04 16 2 C -0.14 -1.57 6.42 29.85 0.19 -1.38 16 3 C 0.51 9.78 7.83 87.66 0.69 10.46 16 4 O -0.58 -15.57 15.98 -3.04 -0.05 -15.62 16 5 N -0.72 -13.16 5.53 -466.80 -2.58 -15.74 16 6 C 0.11 1.95 6.15 85.63 0.53 2.48 16 7 C 0.51 12.34 7.90 87.66 0.69 13.03 16 8 O -0.58 -17.91 15.67 -3.01 -0.05 -17.96 16 9 N -0.70 -16.90 5.19 -463.06 -2.40 -19.30 16 10 C 0.15 4.78 4.85 86.38 0.42 5.20 16 11 C 0.09 3.21 0.78 -10.70 -0.01 3.20 16 12 C -0.15 -4.73 7.86 71.98 0.57 -4.16 16 13 C 0.17 7.76 4.11 86.36 0.35 8.12 16 14 N -0.61 -29.11 2.56 -697.53 -1.79 -30.90 16 15 C -0.26 -13.54 9.65 84.04 0.81 -12.73 16 16 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 17 C -0.05 -2.69 4.95 84.86 0.42 -2.27 16 18 N -0.94 -54.20 11.14 21.65 0.24 -53.95 16 19 Si 0.97 43.52 29.58 68.60 2.03 45.55 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 23 C 0.10 3.97 6.73 86.35 0.58 4.56 16 24 C 0.05 1.62 6.60 72.08 0.48 2.10 16 25 O -0.38 -12.86 10.17 -148.98 -1.52 -14.38 16 26 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 28 H 0.05 0.73 8.10 -2.38 -0.02 0.71 16 29 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.42 7.20 7.44 -92.71 -0.69 6.51 16 32 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.42 8.09 7.00 -92.71 -0.65 7.45 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.06 2.06 6.11 -2.38 -0.01 2.05 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.08 1.83 6.59 -2.39 -0.02 1.82 16 40 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.07 3.52 6.16 -2.39 -0.01 3.51 16 42 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 44 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 45 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 46 H 0.06 1.76 6.26 -2.39 -0.01 1.75 16 Total: -1.00 -70.96 369.66 -0.08 -71.04 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -0.34 Total: 23.71 kcal Atomic # 6 Polarization: 21.18 SS G_CDS: 6.38 Total: 27.55 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -6.53 Total: -119.90 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -1.61 Total: -47.96 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -70.96 -0.08 -71.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107817540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.253 kcal (2) G-P(sol) polarization free energy of solvation -70.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds