Wall clock time and date at job start Tue Mar 31 2020 04:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46862 * 2 1 4 4 C 1.53007 * 109.47064 * 119.99595 * 2 1 3 5 5 C 1.50703 * 109.46868 * 295.00314 * 4 2 1 6 6 N 1.34781 * 119.99483 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00356 * 0.02562 * 5 4 2 8 8 C 1.50701 * 109.47531 * 239.99573 * 2 1 3 9 9 O 1.21280 * 119.99963 * 240.00465 * 8 2 1 10 10 N 1.34773 * 119.99448 * 60.00071 * 8 2 1 11 11 C 1.46503 * 119.99612 * 179.97438 * 10 8 2 12 12 C 1.52997 * 109.47138 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.51376 * 60.00249 * 12 11 10 14 14 C 1.53293 * 109.51568 * 180.10276 * 12 11 10 15 15 N 1.47146 * 108.38993 * 172.27771 * 14 12 11 16 16 C 1.36942 * 120.98636 * 129.48491 * 15 14 12 17 17 H 1.08000 * 120.00498 * 206.23133 * 16 15 14 18 18 C 1.38813 * 119.99405 * 26.22514 * 16 15 14 19 19 N 1.31622 * 120.00087 * 16.91601 * 18 16 15 20 20 Si 1.86805 * 119.99865 * 196.90572 * 18 16 15 21 21 H 1.48507 * 109.46707 * 60.00402 * 20 18 16 22 22 H 1.48500 * 109.47124 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47086 * 300.00764 * 20 18 16 24 24 C 1.47152 * 118.03836 * 309.46635 * 15 14 12 25 25 C 1.53297 * 108.38321 * 50.53181 * 24 15 14 26 26 O 1.42961 * 109.55678 * 299.87423 * 12 11 10 27 27 H 1.09006 * 109.47184 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47621 * 300.00160 * 1 2 3 29 29 H 1.09001 * 109.47081 * 60.00517 * 1 2 3 30 30 H 1.09004 * 109.46984 * 55.00107 * 4 2 1 31 31 H 1.08993 * 109.47012 * 175.00493 * 4 2 1 32 32 H 0.96991 * 120.00243 * 0.02562 * 6 5 4 33 33 H 0.97003 * 119.99221 * 179.97438 * 6 5 4 34 34 H 0.96998 * 120.00799 * 359.97438 * 10 8 2 35 35 H 1.09006 * 109.47297 * 60.00456 * 11 10 8 36 36 H 1.08997 * 109.47378 * 299.99851 * 11 10 8 37 37 H 1.09000 * 109.47648 * 180.10074 * 13 12 11 38 38 H 1.09002 * 109.47156 * 60.09922 * 13 12 11 39 39 H 1.08998 * 109.46764 * 300.10273 * 13 12 11 40 40 H 1.09000 * 109.68517 * 292.00334 * 14 12 11 41 41 H 1.09003 * 109.68257 * 52.55112 * 14 12 11 42 42 H 0.97002 * 119.99818 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.68819 * 170.25477 * 24 15 14 44 44 H 1.08997 * 109.68352 * 290.77705 * 24 15 14 45 45 H 1.08998 * 109.51172 * 67.62264 * 25 24 15 46 46 H 1.09003 * 109.51574 * 187.72821 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 7 1.9844 -0.3917 3.7003 7 8 1.0108 1.0871 2.3633 8 6 2.0324 -0.7105 -1.2304 9 8 2.7297 -1.6966 -1.1190 10 7 1.7069 -0.2500 -2.4545 11 6 2.1957 -0.9404 -3.6506 12 6 1.6852 -0.2197 -4.8999 13 6 2.1935 1.2235 -4.9010 14 6 2.1940 -0.9427 -6.1521 15 7 1.5422 -0.3470 -7.3292 16 6 2.2770 0.0659 -8.4085 17 1 1.9004 0.8483 -9.0507 18 6 3.5059 -0.5211 -8.6769 19 7 3.8202 -1.6728 -8.1226 20 14 4.7135 0.3234 -9.8251 21 1 5.0654 1.6585 -9.2782 22 1 5.9419 -0.5022 -9.9456 23 1 4.0927 0.4850 -11.1644 24 6 0.0773 -0.2086 -7.3126 25 6 -0.3285 0.4788 -6.0038 26 8 0.2556 -0.2223 -4.9032 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -1.7198 1.2953 31 1 3.1263 -0.7993 1.2057 32 1 2.4882 -1.2155 3.7909 33 1 1.7280 0.1095 4.4902 34 1 1.1489 0.5384 -2.5436 35 1 1.8328 -1.9682 -3.6508 36 1 3.2857 -0.9399 -3.6504 37 1 1.8280 1.7368 -5.7903 38 1 3.2836 1.2247 -4.9031 39 1 1.8313 1.7369 -4.0104 40 1 3.2746 -0.8235 -6.2313 41 1 1.9447 -2.0021 -6.0912 42 1 4.6789 -2.0831 -8.3105 43 1 -0.2439 0.3969 -8.1601 44 1 -0.3853 -1.1939 -7.3691 45 1 0.0264 1.5094 -6.0086 46 1 -1.4143 0.4680 -5.9083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108116802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:10 Heat of formation + Delta-G solvation = -105.922045 kcal Electronic energy + Delta-G solvation = -27261.417122 eV Core-core repulsion = 23379.511066 eV Total energy + Delta-G solvation = -3881.906056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35459 -39.46977 -38.70711 -34.95825 -34.32618 -34.27069 -33.96705 -31.64849 -31.25687 -28.13972 -27.93054 -26.51505 -25.71239 -23.70002 -23.22059 -21.33479 -20.73887 -19.78009 -18.67310 -17.77954 -17.49804 -17.01004 -16.22020 -15.93691 -15.75609 -15.45874 -15.15883 -14.71214 -14.39212 -14.23256 -13.96644 -13.59409 -13.51887 -13.40882 -13.00319 -12.87021 -12.69104 -12.37800 -12.09978 -11.88966 -11.58388 -11.38078 -11.22601 -11.18637 -11.01076 -10.81242 -10.68484 -10.32085 -10.27698 -10.18501 -10.01861 -9.97417 -9.65865 -9.49391 -9.04415 -8.79384 -8.54399 -6.75048 -5.85519 -3.28856 2.36463 2.77899 3.06512 3.33786 3.40429 3.40791 3.55375 4.24961 4.39895 4.42937 4.73356 4.80457 4.97758 5.15156 5.27405 5.33473 5.44606 5.48198 5.50939 5.52944 5.68884 5.77296 5.90530 5.92696 5.94427 6.02285 6.10111 6.14198 6.15504 6.31571 6.46071 6.47005 6.58306 6.69586 6.76404 6.82392 6.98849 7.06530 7.45685 7.69235 7.70102 7.88052 7.96407 8.32009 8.37552 9.09858 9.72952 10.30141 11.22451 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.002900 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.256393 B = 9651.489166 C =10208.205405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 H 0.103 0.897 4 C -0.124 4.124 5 C 0.519 3.481 6 N -0.858 5.858 7 O -0.542 6.542 8 C 0.514 3.486 9 O -0.550 6.550 10 N -0.714 5.714 11 C 0.139 3.861 12 C 0.078 3.922 13 C -0.162 4.162 14 C 0.160 3.840 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.384 6.384 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.403 0.597 33 H 0.400 0.600 34 H 0.403 0.597 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.096 0.904 41 H 0.029 0.971 42 H 0.256 0.744 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.048 0.952 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 3.259 19.175 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 H 0.121 0.879 4 C -0.165 4.165 5 C 0.304 3.696 6 N -0.422 5.422 7 O -0.419 6.419 8 C 0.299 3.701 9 O -0.428 6.428 10 N -0.365 5.365 11 C 0.015 3.985 12 C 0.037 3.963 13 C -0.220 4.220 14 C 0.033 3.967 15 N -0.314 5.314 16 C -0.384 4.384 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.209 1.209 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.303 6.303 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.231 0.769 33 H 0.230 0.770 34 H 0.238 0.762 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.114 0.886 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.066 0.934 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.604 2.990 19.029 19.805 hybrid contribution 0.720 0.576 -0.569 1.084 sum -3.884 3.566 18.460 19.198 Atomic orbital electron populations 1.21906 0.92314 1.02515 1.03956 1.20991 0.98348 1.00845 0.91423 0.87859 1.21460 1.03990 1.00115 0.90893 1.20746 0.78224 0.85304 0.85311 1.43900 1.60336 1.29632 1.08296 1.90720 1.39697 1.24686 1.86755 1.20520 0.80188 0.84596 0.84765 1.90688 1.38583 1.26550 1.86997 1.45969 1.52977 1.32088 1.05419 1.21360 0.98979 0.96447 0.81667 1.22549 0.81577 0.95818 0.96364 1.22209 1.01722 0.96596 1.01426 1.21288 0.99458 0.93714 0.82200 1.43991 0.99524 1.72733 1.15170 1.19117 1.00526 1.13836 1.04926 0.91466 1.25039 1.00070 0.95381 0.99025 1.70007 1.22649 1.15096 1.46831 0.86358 0.80746 0.78912 0.80688 1.20978 1.21542 1.20856 1.21596 0.86857 0.97951 0.95326 1.23035 0.96594 0.95424 0.88132 1.87811 1.19358 1.76274 1.46886 0.92555 0.89842 0.91909 0.87990 0.87822 0.76913 0.76969 0.76178 0.90890 0.90108 0.90829 0.91910 0.93905 0.88569 0.95296 0.93372 0.92067 0.95669 0.93378 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.83 37.16 0.33 -1.23 16 2 C -0.09 -1.03 2.37 -91.77 -0.22 -1.25 16 3 H 0.10 1.10 7.95 -51.93 -0.41 0.69 16 4 C -0.12 -1.14 4.52 -27.88 -0.13 -1.27 16 5 C 0.52 4.73 7.82 -10.98 -0.09 4.65 16 6 N -0.86 -4.58 8.87 31.22 0.28 -4.30 16 7 O -0.54 -6.87 14.80 5.56 0.08 -6.78 16 8 C 0.51 7.23 7.15 -10.99 -0.08 7.15 16 9 O -0.55 -9.45 15.92 5.56 0.09 -9.37 16 10 N -0.71 -10.16 5.05 -60.29 -0.30 -10.47 16 11 C 0.14 2.37 4.82 -4.04 -0.02 2.35 16 12 C 0.08 1.44 0.76 -90.47 -0.07 1.37 16 13 C -0.16 -2.77 7.92 37.16 0.29 -2.47 16 14 C 0.16 3.70 4.11 -3.54 -0.01 3.69 16 15 N -0.59 -14.30 2.57 -171.83 -0.44 -14.74 16 16 C -0.25 -6.74 9.65 -15.06 -0.15 -6.89 16 17 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 18 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 19 N -0.90 -25.56 11.14 55.49 0.62 -24.94 16 20 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.11 2.23 6.73 -3.53 -0.02 2.20 16 25 C 0.05 0.79 6.60 37.31 0.25 1.04 16 26 O -0.38 -7.00 9.98 -35.23 -0.35 -7.35 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.92 5.95 -51.93 -0.31 0.61 16 29 H 0.06 0.63 7.56 -51.93 -0.39 0.24 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 0.91 7.95 -51.93 -0.41 0.50 16 32 H 0.40 1.10 8.83 -40.82 -0.36 0.74 16 33 H 0.40 1.76 8.93 -40.82 -0.36 1.39 16 34 H 0.40 5.17 6.62 -40.82 -0.27 4.90 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.37 6.11 -51.93 -0.32 1.06 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.04 0.61 6.86 -51.93 -0.36 0.26 16 40 H 0.10 2.46 6.14 -51.93 -0.32 2.14 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.80 6.25 -51.93 -0.32 0.48 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -32.85 363.92 -6.76 -39.61 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.18 Total: 7.35 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 0.00 Total: 9.35 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.15 Total: -54.46 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.18 Total: -23.50 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.85 -6.76 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108116802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.315 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds