Wall clock time and date at job start Tue Mar 31 2020 04:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46862 * 2 1 4 4 C 1.53007 * 109.47064 * 119.99595 * 2 1 3 5 5 C 1.50703 * 109.46868 * 295.00314 * 4 2 1 6 6 N 1.34781 * 119.99483 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00356 * 0.02562 * 5 4 2 8 8 C 1.50701 * 109.47531 * 239.99573 * 2 1 3 9 9 O 1.21280 * 119.99963 * 240.00465 * 8 2 1 10 10 N 1.34773 * 119.99448 * 60.00071 * 8 2 1 11 11 C 1.46503 * 119.99612 * 179.97438 * 10 8 2 12 12 C 1.52997 * 109.47138 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.51376 * 60.00249 * 12 11 10 14 14 C 1.53293 * 109.51568 * 180.10276 * 12 11 10 15 15 N 1.47146 * 108.38993 * 172.27771 * 14 12 11 16 16 C 1.36942 * 120.98636 * 129.48491 * 15 14 12 17 17 H 1.08000 * 120.00498 * 206.23133 * 16 15 14 18 18 C 1.38813 * 119.99405 * 26.22514 * 16 15 14 19 19 N 1.31622 * 120.00087 * 16.91601 * 18 16 15 20 20 Si 1.86805 * 119.99865 * 196.90572 * 18 16 15 21 21 H 1.48507 * 109.46707 * 60.00402 * 20 18 16 22 22 H 1.48500 * 109.47124 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47086 * 300.00764 * 20 18 16 24 24 C 1.47152 * 118.03836 * 309.46635 * 15 14 12 25 25 C 1.53297 * 108.38321 * 50.53181 * 24 15 14 26 26 O 1.42961 * 109.55678 * 299.87423 * 12 11 10 27 27 H 1.09006 * 109.47184 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47621 * 300.00160 * 1 2 3 29 29 H 1.09001 * 109.47081 * 60.00517 * 1 2 3 30 30 H 1.09004 * 109.46984 * 55.00107 * 4 2 1 31 31 H 1.08993 * 109.47012 * 175.00493 * 4 2 1 32 32 H 0.96991 * 120.00243 * 0.02562 * 6 5 4 33 33 H 0.97003 * 119.99221 * 179.97438 * 6 5 4 34 34 H 0.96998 * 120.00799 * 359.97438 * 10 8 2 35 35 H 1.09006 * 109.47297 * 60.00456 * 11 10 8 36 36 H 1.08997 * 109.47378 * 299.99851 * 11 10 8 37 37 H 1.09000 * 109.47648 * 180.10074 * 13 12 11 38 38 H 1.09002 * 109.47156 * 60.09922 * 13 12 11 39 39 H 1.08998 * 109.46764 * 300.10273 * 13 12 11 40 40 H 1.09000 * 109.68517 * 292.00334 * 14 12 11 41 41 H 1.09003 * 109.68257 * 52.55112 * 14 12 11 42 42 H 0.97002 * 119.99818 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.68819 * 170.25477 * 24 15 14 44 44 H 1.08997 * 109.68352 * 290.77705 * 24 15 14 45 45 H 1.08998 * 109.51172 * 67.62264 * 25 24 15 46 46 H 1.09003 * 109.51574 * 187.72821 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 7 1.9844 -0.3917 3.7003 7 8 1.0108 1.0871 2.3633 8 6 2.0324 -0.7105 -1.2304 9 8 2.7297 -1.6966 -1.1190 10 7 1.7069 -0.2500 -2.4545 11 6 2.1957 -0.9404 -3.6506 12 6 1.6852 -0.2197 -4.8999 13 6 2.1935 1.2235 -4.9010 14 6 2.1940 -0.9427 -6.1521 15 7 1.5422 -0.3470 -7.3292 16 6 2.2770 0.0659 -8.4085 17 1 1.9004 0.8483 -9.0507 18 6 3.5059 -0.5211 -8.6769 19 7 3.8202 -1.6728 -8.1226 20 14 4.7135 0.3234 -9.8251 21 1 5.0654 1.6585 -9.2782 22 1 5.9419 -0.5022 -9.9456 23 1 4.0927 0.4850 -11.1644 24 6 0.0773 -0.2086 -7.3126 25 6 -0.3285 0.4788 -6.0038 26 8 0.2556 -0.2223 -4.9032 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -1.7198 1.2953 31 1 3.1263 -0.7993 1.2057 32 1 2.4882 -1.2155 3.7909 33 1 1.7280 0.1095 4.4902 34 1 1.1489 0.5384 -2.5436 35 1 1.8328 -1.9682 -3.6508 36 1 3.2857 -0.9399 -3.6504 37 1 1.8280 1.7368 -5.7903 38 1 3.2836 1.2247 -4.9031 39 1 1.8313 1.7369 -4.0104 40 1 3.2746 -0.8235 -6.2313 41 1 1.9447 -2.0021 -6.0912 42 1 4.6789 -2.0831 -8.3105 43 1 -0.2439 0.3969 -8.1601 44 1 -0.3853 -1.1939 -7.3691 45 1 0.0264 1.5094 -6.0086 46 1 -1.4143 0.4680 -5.9083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108116802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:09 Heat of formation + Delta-G solvation = -131.854917 kcal Electronic energy + Delta-G solvation = -27262.541656 eV Core-core repulsion = 23379.511066 eV Total energy + Delta-G solvation = -3883.030590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40322 -40.65614 -39.93827 -36.54368 -35.90922 -35.19489 -34.59749 -33.22922 -33.01424 -29.58246 -28.92445 -28.03776 -27.31557 -25.02470 -24.70418 -22.86530 -21.67778 -20.81747 -20.20476 -18.94062 -18.64184 -18.10243 -17.42845 -17.17809 -16.86462 -16.78759 -16.49587 -16.09218 -15.78436 -15.60827 -15.36620 -15.20581 -14.81451 -14.58898 -14.43154 -14.09307 -13.91916 -13.59359 -13.36692 -13.16875 -12.94625 -12.90241 -12.75081 -12.52076 -12.43835 -12.18287 -12.16275 -12.06310 -11.94638 -11.82735 -11.14588 -10.99427 -10.81967 -10.69472 -10.52796 -10.48463 -10.07468 -8.71013 -7.89075 -5.35737 1.46742 1.48683 1.55541 1.64067 1.67495 2.08186 2.48567 2.74162 2.82870 3.25558 3.51577 3.57610 3.86624 3.96310 4.02758 4.03735 4.12349 4.21489 4.43430 4.44255 4.47566 4.59327 4.65807 4.69946 4.72169 4.76152 4.80942 4.97959 4.98628 5.06152 5.09780 5.13335 5.21914 5.34408 5.36695 5.41426 5.54435 5.62071 5.96668 6.30022 6.38170 6.48097 6.56681 7.07738 7.23606 7.39181 7.77022 8.30958 9.16432 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.002900 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.256393 B = 9651.489166 C =10208.205405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.111 0.889 4 C -0.122 4.122 5 C 0.521 3.479 6 N -0.839 5.839 7 O -0.580 6.580 8 C 0.515 3.485 9 O -0.582 6.582 10 N -0.705 5.705 11 C 0.149 3.851 12 C 0.093 3.907 13 C -0.153 4.153 14 C 0.168 3.832 15 N -0.607 5.607 16 C -0.260 4.260 17 H 0.073 0.927 18 C -0.049 4.049 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.275 1.275 22 H -0.297 1.297 23 H -0.276 1.276 24 C 0.102 3.898 25 C 0.053 3.947 26 O -0.384 6.384 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.417 0.583 33 H 0.408 0.592 34 H 0.413 0.587 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.067 0.933 41 H -0.008 1.008 42 H 0.250 0.750 43 H 0.071 0.929 44 H 0.012 0.988 45 H 0.060 0.940 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 4.938 20.577 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.128 0.872 4 C -0.162 4.162 5 C 0.306 3.694 6 N -0.403 5.403 7 O -0.460 6.460 8 C 0.303 3.697 9 O -0.462 6.462 10 N -0.357 5.357 11 C 0.024 3.976 12 C 0.052 3.948 13 C -0.211 4.211 14 C 0.041 3.959 15 N -0.331 5.331 16 C -0.390 4.390 17 H 0.091 0.909 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.794 3.206 21 H -0.201 1.201 22 H -0.223 1.223 23 H -0.202 1.202 24 C -0.024 4.024 25 C -0.025 4.025 26 O -0.304 6.304 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.248 0.752 33 H 0.239 0.761 34 H 0.250 0.750 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.010 0.990 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.030 0.970 45 H 0.078 0.922 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.498 4.678 20.471 21.707 hybrid contribution 0.932 -0.012 -1.006 1.372 sum -4.566 4.666 19.466 20.531 Atomic orbital electron populations 1.21857 0.91675 1.02511 1.04063 1.20966 0.98701 1.00840 0.90308 0.87150 1.21439 1.04257 1.00221 0.90319 1.20666 0.77870 0.84717 0.86123 1.43729 1.59178 1.29914 1.07431 1.90709 1.41695 1.26291 1.87335 1.21081 0.79288 0.84082 0.85278 1.90678 1.40029 1.28110 1.87416 1.45828 1.53034 1.32167 1.04668 1.21028 0.98432 0.95652 0.82448 1.22195 0.81860 0.96284 0.94439 1.22115 1.01271 0.95294 1.02407 1.21057 0.97937 0.92412 0.84479 1.44248 1.01229 1.72582 1.15072 1.19468 1.00823 1.13468 1.05229 0.90942 1.25787 1.01781 0.95957 1.00967 1.70177 1.22686 1.16637 1.48689 0.85358 0.78242 0.77889 0.79070 1.20126 1.22310 1.20155 1.21816 0.84566 0.97934 0.98050 1.23103 0.98593 0.95173 0.85599 1.87823 1.18759 1.76646 1.47132 0.92603 0.90067 0.91425 0.87325 0.87393 0.75201 0.76052 0.74980 0.92681 0.90892 0.92083 0.92618 0.90508 0.91477 0.98957 0.94044 0.91037 0.96980 0.92188 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.83 71.98 0.64 -2.09 16 2 C -0.09 -1.74 2.37 -11.54 -0.03 -1.77 16 3 H 0.11 2.12 7.95 -2.39 -0.02 2.10 16 4 C -0.12 -2.03 4.52 29.85 0.13 -1.89 16 5 C 0.52 8.54 7.82 87.66 0.69 9.22 16 6 N -0.84 -7.07 8.87 -173.52 -1.54 -8.61 16 7 O -0.58 -13.82 14.80 -3.04 -0.04 -13.86 16 8 C 0.52 13.89 7.15 87.66 0.63 14.52 16 9 O -0.58 -19.73 15.92 -3.03 -0.05 -19.78 16 10 N -0.71 -19.13 5.05 -463.06 -2.34 -21.47 16 11 C 0.15 5.10 4.82 86.38 0.42 5.51 16 12 C 0.09 3.41 0.76 -10.70 -0.01 3.40 16 13 C -0.15 -5.00 7.92 71.98 0.57 -4.43 16 14 C 0.17 8.04 4.11 86.35 0.36 8.39 16 15 N -0.61 -29.73 2.57 -697.56 -1.79 -31.52 16 16 C -0.26 -13.85 9.65 84.03 0.81 -13.04 16 17 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 18 C -0.05 -2.71 4.95 84.86 0.42 -2.29 16 19 N -0.94 -54.96 11.14 21.65 0.24 -54.72 16 20 Si 0.97 44.04 29.59 68.60 2.03 46.07 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 C 0.10 4.08 6.73 86.35 0.58 4.66 16 25 C 0.05 1.67 6.60 72.08 0.48 2.14 16 26 O -0.38 -13.34 9.98 -148.98 -1.49 -14.83 16 27 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.08 1.64 5.95 -2.39 -0.01 1.63 16 29 H 0.07 1.20 7.56 -2.39 -0.02 1.18 16 30 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.11 1.72 7.95 -2.39 -0.02 1.70 16 32 H 0.42 1.24 8.83 -92.71 -0.82 0.42 16 33 H 0.41 2.67 8.93 -92.71 -0.83 1.84 16 34 H 0.41 9.54 6.62 -92.71 -0.61 8.93 16 35 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.06 2.17 6.11 -2.39 -0.01 2.15 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 1.97 6.86 -2.39 -0.02 1.96 16 40 H 0.07 3.59 6.14 -2.39 -0.01 3.58 16 41 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.06 1.80 6.25 -2.39 -0.01 1.79 16 46 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -72.37 363.92 -0.54 -72.91 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -1.24 Total: 23.48 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 5.68 Total: 22.33 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -5.43 Total: -116.31 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -1.58 Total: -48.47 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.37 -0.54 -72.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108116802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.947 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds